Wall clock time and date at job start Tue Mar 31 2020 05:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21287 * 119.99510 * 2 1 4 4 N 1.34769 * 120.00193 * 180.02562 * 2 1 3 5 5 C 1.47031 * 125.64761 * 359.97438 * 4 2 1 6 6 C 1.54327 * 107.26967 * 178.98668 * 5 4 2 7 7 C 1.55159 * 102.94206 * 337.80487 * 6 5 4 8 8 H 1.09001 * 111.00004 * 277.38839 * 7 6 5 9 9 C 1.53005 * 111.00039 * 153.57825 * 7 6 5 10 10 N 1.46902 * 109.46590 * 174.99793 * 9 7 6 11 11 C 1.46898 * 111.00283 * 293.95038 * 10 9 7 12 12 C 1.46906 * 110.99573 * 169.99897 * 10 9 7 13 13 C 1.52997 * 109.46848 * 189.99875 * 12 10 9 14 14 H 1.08994 * 109.47537 * 305.00287 * 13 12 10 15 15 C 1.53005 * 109.47124 * 65.00325 * 13 12 10 16 16 C 1.52997 * 109.47099 * 184.99874 * 13 12 10 17 17 C 1.50701 * 109.47581 * 175.00037 * 16 13 12 18 18 H 1.08007 * 119.99384 * 0.02562 * 17 16 13 19 19 C 1.37873 * 120.00229 * 179.97438 * 17 16 13 20 20 N 1.31512 * 119.99964 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99658 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47074 * 60.00601 * 21 19 17 23 23 H 1.48507 * 109.46555 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47188 * 300.00056 * 21 19 17 25 25 C 1.47425 * 125.65114 * 180.02562 * 4 2 1 26 26 H 1.09001 * 109.47250 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47119 * 299.99411 * 1 2 3 28 28 H 1.08999 * 109.47366 * 59.99523 * 1 2 3 29 29 H 1.08992 * 109.88085 * 59.56742 * 5 4 2 30 30 H 1.08999 * 110.00622 * 298.47683 * 5 4 2 31 31 H 1.08997 * 110.71607 * 219.44130 * 6 5 4 32 32 H 1.09003 * 110.71492 * 96.17085 * 6 5 4 33 33 H 1.08993 * 109.47005 * 55.00099 * 9 7 6 34 34 H 1.09000 * 109.47130 * 294.99335 * 9 7 6 35 35 H 1.08997 * 109.47334 * 296.05250 * 11 10 9 36 36 H 1.09000 * 109.46674 * 56.05127 * 11 10 9 37 37 H 1.08995 * 109.47296 * 176.04950 * 11 10 9 38 38 H 1.08998 * 109.47121 * 309.99709 * 12 10 9 39 39 H 1.09000 * 109.47141 * 69.99907 * 12 10 9 40 40 H 1.08999 * 109.46832 * 179.97438 * 15 13 12 41 41 H 1.09002 * 109.46961 * 299.99951 * 15 13 12 42 42 H 1.09003 * 109.47109 * 59.99434 * 15 13 12 43 43 H 1.09002 * 109.47171 * 295.00392 * 16 13 12 44 44 H 1.08998 * 109.46951 * 55.00040 * 16 13 12 45 45 H 0.97003 * 119.99701 * 179.97438 * 20 19 17 46 46 H 1.08994 * 110.36857 * 85.24410 * 25 4 2 47 47 H 1.09005 * 110.36298 * 322.91974 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 1.5746 -2.5066 -0.0006 6 6 2.7281 -3.5315 -0.0273 7 6 3.9083 -2.7113 -0.6120 8 1 3.8593 -2.6777 -1.7004 9 6 5.2520 -3.2735 -0.1434 10 7 6.3440 -2.5504 -0.8088 11 6 6.3422 -2.8088 -2.2549 12 6 7.6424 -2.8946 -0.2141 13 6 8.7173 -1.9493 -0.7541 14 1 8.7159 -1.9819 -1.8436 15 6 8.4234 -0.5224 -0.2863 16 6 10.0882 -2.3847 -0.2326 17 6 11.1592 -1.5306 -0.8607 18 1 10.8890 -0.7545 -1.5616 19 6 12.4838 -1.7393 -0.5400 20 7 12.8126 -2.6840 0.3138 21 14 13.8112 -0.6801 -1.3182 22 1 13.5772 0.7438 -0.9675 23 1 15.1418 -1.1029 -0.8120 24 1 13.7700 -0.8397 -2.7940 25 6 3.6480 -1.3122 -0.0001 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 0.9485 -2.6300 -0.8841 30 1 0.9763 -2.6452 0.8999 31 1 2.4827 -4.3713 -0.6774 32 1 2.9602 -3.8772 0.9801 33 1 5.3106 -4.3322 -0.3956 34 1 5.3403 -3.1515 0.9361 35 1 6.5402 -3.8653 -2.4354 36 1 5.3693 -2.5453 -2.6698 37 1 7.1157 -2.2074 -2.7324 38 1 7.5831 -2.7961 0.8698 39 1 7.8992 -3.9221 -0.4720 40 1 9.1895 0.1510 -0.6707 41 1 7.4467 -0.2122 -0.6578 42 1 8.4248 -0.4897 0.8032 43 1 10.1188 -2.2675 0.8507 44 1 10.2595 -3.4299 -0.4899 45 1 13.7446 -2.8310 0.5392 46 1 4.0334 -1.2660 1.0184 47 1 4.1059 -0.5378 -0.6155 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618888311.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:29 Heat of formation + Delta-G solvation = -48.146189 kcal Electronic energy + Delta-G solvation = -22638.081071 eV Core-core repulsion = 19434.159180 eV Total energy + Delta-G solvation = -3203.921891 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.25583 -38.38964 -37.09979 -34.50722 -32.60446 -31.69920 -30.09814 -29.27493 -27.18015 -26.73367 -25.82190 -24.00652 -23.04507 -21.48260 -20.19076 -19.49394 -18.78590 -17.24569 -16.67287 -16.34312 -15.67319 -15.27240 -15.04853 -14.67643 -14.41710 -14.11761 -13.67827 -13.47915 -13.24152 -13.02464 -12.84862 -12.54005 -12.46105 -12.29725 -12.18168 -11.88478 -11.59971 -11.36594 -11.30163 -11.22147 -11.04039 -10.81388 -10.68312 -10.67994 -10.25189 -10.20935 -10.03598 -9.56712 -9.09206 -8.93004 -8.84559 -8.29753 -8.01923 -5.94998 -3.95835 2.44948 2.81186 3.36716 3.40726 3.43697 3.96103 4.26138 4.31684 4.50884 4.57266 4.69055 4.85803 4.93926 5.06446 5.10705 5.20996 5.32061 5.39205 5.40837 5.46806 5.48677 5.53258 5.63077 5.67198 5.73816 5.83563 5.93808 5.99537 6.01853 6.12402 6.16834 6.26079 6.44139 6.58308 6.74768 7.05458 7.17552 7.25143 7.32344 7.38697 7.44460 7.72209 7.88780 7.98303 8.05484 8.49905 9.10377 9.67410 11.16569 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029554 B = 0.002942 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.195089 B = 9514.011858 C =10082.311055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.523 3.477 3 O -0.545 6.545 4 N -0.623 5.623 5 C 0.102 3.898 6 C -0.129 4.129 7 C -0.096 4.096 8 H 0.087 0.913 9 C 0.065 3.935 10 N -0.538 5.538 11 C 0.021 3.979 12 C 0.061 3.939 13 C -0.081 4.081 14 H 0.056 0.944 15 C -0.122 4.122 16 C 0.027 3.973 17 C -0.512 4.512 18 H 0.055 0.945 19 C 0.055 3.945 20 N -0.898 5.898 21 Si 0.890 3.110 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.278 1.278 25 C 0.119 3.881 26 H 0.075 0.925 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.036 0.964 34 H 0.076 0.924 35 H 0.021 0.979 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.028 0.972 40 H 0.052 0.948 41 H 0.042 0.958 42 H 0.038 0.962 43 H 0.015 0.985 44 H 0.011 0.989 45 H 0.260 0.740 46 H 0.069 0.931 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.950 -3.573 -0.997 26.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.312 3.688 3 O -0.422 6.422 4 N -0.358 5.358 5 C -0.022 4.022 6 C -0.167 4.167 7 C -0.116 4.116 8 H 0.105 0.895 9 C -0.064 4.064 10 N -0.262 5.262 11 C -0.127 4.127 12 C -0.066 4.066 13 C -0.100 4.100 14 H 0.074 0.926 15 C -0.180 4.180 16 C -0.010 4.010 17 C -0.550 4.550 18 H 0.074 0.926 19 C -0.145 4.145 20 N -0.538 5.538 21 Si 0.718 3.282 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.203 1.203 25 C -0.003 4.003 26 H 0.094 0.906 27 H 0.112 0.888 28 H 0.112 0.888 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.054 0.946 34 H 0.094 0.906 35 H 0.040 0.960 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.046 0.954 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.034 0.966 44 H 0.030 0.970 45 H 0.069 0.931 46 H 0.087 0.913 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -25.602 -2.505 -0.829 25.737 hybrid contribution 0.950 -0.515 -0.475 1.180 sum -24.651 -3.020 -1.303 24.870 Atomic orbital electron populations 1.21875 0.91697 1.04136 1.05186 1.20480 0.90270 0.82190 0.75876 1.90757 1.70697 1.30644 1.50125 1.48687 1.08153 1.05598 1.73389 1.22025 0.96459 0.82136 1.01541 1.22700 0.94217 0.97365 1.02463 1.22422 0.93982 0.94289 1.00873 0.89500 1.22034 0.89776 0.95264 0.99304 1.62025 1.03803 1.57064 1.03286 1.22450 1.02075 0.99166 0.88994 1.22332 0.87711 0.97548 0.98960 1.21220 0.95062 0.94319 0.99366 0.92569 1.21579 0.99685 0.96813 0.99899 1.19120 0.89331 0.96189 0.96371 1.21203 0.91179 1.17283 1.25336 0.92637 1.25015 0.98770 0.95440 0.95315 1.69956 1.17643 1.32047 1.34134 0.86698 0.81015 0.80924 0.79607 1.20241 1.21394 1.20336 1.22219 0.79067 0.97552 1.01415 0.90641 0.88813 0.88817 0.91410 0.91341 0.89923 0.90213 0.94588 0.90593 0.96012 0.92117 0.90607 0.91380 0.95353 0.92854 0.93877 0.94262 0.96627 0.97034 0.93079 0.91270 0.89711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.13 10.21 36.00 0.37 -0.76 16 2 C 0.52 6.06 7.96 -10.99 -0.09 5.97 16 3 O -0.54 -9.04 17.36 5.55 0.10 -8.94 16 4 N -0.62 -6.32 3.33 -170.52 -0.57 -6.89 16 5 C 0.10 0.65 5.81 -3.06 -0.02 0.63 16 6 C -0.13 -0.82 6.42 -24.89 -0.16 -0.98 16 7 C -0.10 -0.89 2.99 -88.47 -0.26 -1.15 16 8 H 0.09 0.83 6.23 -51.93 -0.32 0.51 16 9 C 0.06 0.71 4.42 -3.82 -0.02 0.70 16 10 N -0.54 -7.57 4.16 -242.92 -1.01 -8.58 16 11 C 0.02 0.28 9.15 60.06 0.55 0.83 16 12 C 0.06 1.05 4.35 -3.82 -0.02 1.03 16 13 C -0.08 -1.66 2.26 -90.62 -0.20 -1.86 16 14 H 0.06 1.17 6.33 -51.93 -0.33 0.84 16 15 C -0.12 -2.44 8.89 37.16 0.33 -2.11 16 16 C 0.03 0.71 4.45 -27.88 -0.12 0.58 16 17 C -0.51 -14.48 8.41 -34.44 -0.29 -14.77 16 18 H 0.06 1.54 7.06 -52.48 -0.37 1.16 16 19 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 20 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 21 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 C 0.12 1.37 6.32 -2.53 -0.02 1.35 16 26 H 0.07 0.33 6.60 -51.93 -0.34 -0.02 16 27 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.34 8.02 -51.93 -0.42 -0.08 16 30 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.48 8.04 -51.93 -0.42 0.07 16 33 H 0.04 0.38 8.12 -51.93 -0.42 -0.04 16 34 H 0.08 0.84 7.75 -51.93 -0.40 0.43 16 35 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 36 H 0.06 0.68 6.18 -51.93 -0.32 0.36 16 37 H 0.08 1.11 6.37 -51.93 -0.33 0.78 16 38 H 0.07 1.16 7.93 -51.93 -0.41 0.75 16 39 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 40 H 0.05 1.14 6.95 -51.93 -0.36 0.78 16 41 H 0.04 0.78 7.75 -51.93 -0.40 0.38 16 42 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 46 H 0.07 0.84 7.91 -51.93 -0.41 0.43 16 47 H 0.08 1.20 8.04 -51.93 -0.42 0.78 16 LS Contribution 366.87 15.07 5.53 5.53 Total: -1.00 -33.28 366.87 -8.90 -42.17 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -8.61 Total: -4.72 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -0.05 Total: -9.05 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: -0.84 Total: -41.95 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.10 Total: -8.94 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.28 -8.90 -42.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618888311.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.972 kcal (2) G-P(sol) polarization free energy of solvation -33.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds