Wall clock time and date at job start Tue Mar 31 2020 05:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21274 * 120.00521 * 2 1 4 4 N 1.34778 * 119.99746 * 180.27445 * 2 1 3 5 5 C 1.47029 * 125.64562 * 359.75573 * 4 2 1 6 6 C 1.54327 * 107.26917 * 178.90298 * 5 4 2 7 7 C 1.55166 * 102.94108 * 337.80382 * 6 5 4 8 8 H 1.09000 * 111.00310 * 277.42871 * 7 6 5 9 9 C 1.53002 * 111.00277 * 153.61599 * 7 6 5 10 10 N 1.46900 * 109.46828 * 174.99842 * 9 7 6 11 11 C 1.46903 * 111.00110 * 293.95496 * 10 9 7 12 12 C 1.46901 * 110.99803 * 169.99967 * 10 9 7 13 13 C 1.52998 * 109.47016 * 196.25158 * 12 10 9 14 14 H 1.08994 * 109.47282 * 303.13326 * 13 12 10 15 15 C 1.53002 * 109.47025 * 183.13219 * 13 12 10 16 16 C 1.53002 * 109.47022 * 63.13746 * 13 12 10 17 17 C 1.50701 * 109.46753 * 185.00167 * 16 13 12 18 18 H 1.07996 * 120.00333 * 359.97438 * 17 16 13 19 19 C 1.37884 * 119.99670 * 179.97438 * 17 16 13 20 20 N 1.31511 * 119.99713 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99854 * 359.97438 * 19 17 16 22 22 H 1.48509 * 109.46915 * 90.00353 * 21 19 17 23 23 H 1.48500 * 109.46925 * 209.99536 * 21 19 17 24 24 H 1.48498 * 109.47505 * 330.00096 * 21 19 17 25 25 C 1.47424 * 125.65159 * 179.43795 * 4 2 1 26 26 H 1.09001 * 109.46751 * 89.99603 * 1 2 3 27 27 H 1.09000 * 109.47216 * 209.99879 * 1 2 3 28 28 H 1.09001 * 109.46598 * 330.00532 * 1 2 3 29 29 H 1.08997 * 109.87831 * 298.31471 * 5 4 2 30 30 H 1.08993 * 109.88396 * 59.48326 * 5 4 2 31 31 H 1.08998 * 110.72297 * 96.16338 * 6 5 4 32 32 H 1.09002 * 110.72179 * 219.26462 * 6 5 4 33 33 H 1.08999 * 109.47191 * 294.99652 * 9 7 6 34 34 H 1.08996 * 109.47125 * 54.99818 * 9 7 6 35 35 H 1.08996 * 109.47490 * 64.18431 * 11 10 9 36 36 H 1.09001 * 109.47189 * 184.19215 * 11 10 9 37 37 H 1.09000 * 109.46844 * 304.18915 * 11 10 9 38 38 H 1.08999 * 109.47077 * 316.25078 * 12 10 9 39 39 H 1.09001 * 109.46908 * 76.25343 * 12 10 9 40 40 H 1.09000 * 109.46750 * 54.46222 * 15 13 12 41 41 H 1.08998 * 109.47027 * 174.45515 * 15 13 12 42 42 H 1.08999 * 109.47407 * 294.45626 * 15 13 12 43 43 H 1.09005 * 109.47026 * 304.99403 * 16 13 12 44 44 H 1.08992 * 109.47332 * 64.99873 * 16 13 12 45 45 H 0.97006 * 119.99321 * 179.97438 * 20 19 17 46 46 H 1.09001 * 110.36648 * 323.01389 * 25 4 2 47 47 H 1.09004 * 110.36454 * 85.32541 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1809 -1.1672 -0.0056 5 6 1.5745 -2.5067 -0.0069 6 6 2.7278 -3.5316 -0.0421 7 6 3.9053 -2.7097 -0.6298 8 1 3.8510 -2.6721 -1.7178 9 6 5.2512 -3.2738 -0.1700 10 7 6.3400 -2.5487 -0.8382 11 6 6.3309 -2.8020 -2.2853 12 6 7.6413 -2.8955 -0.2513 13 6 8.6829 -1.8559 -0.6700 14 1 8.7265 -1.8030 -1.7578 15 6 10.0540 -2.2590 -0.1236 16 6 8.2921 -0.4875 -0.1081 17 6 9.2487 0.5579 -0.6210 18 1 10.0550 0.2746 -1.2814 19 6 9.0946 1.8761 -0.2472 20 7 9.9297 2.7883 -0.6945 21 14 7.6996 2.3662 0.8945 22 1 8.1597 2.2793 2.3038 23 1 7.2815 3.7594 0.5954 24 1 6.5489 1.4496 0.6919 25 6 3.6479 -1.3124 -0.0180 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3632 0.8901 0.5138 29 1 0.9821 -2.6462 0.8973 30 1 0.9443 -2.6274 -0.8879 31 1 2.9647 -3.8803 0.9630 32 1 2.4781 -4.3710 -0.6911 33 1 5.3449 -3.1558 0.9095 34 1 5.3083 -4.3317 -0.4261 35 1 5.4128 -2.4046 -2.7179 36 1 7.1903 -2.3139 -2.7450 37 1 6.3829 -3.8755 -2.4665 38 1 7.5578 -2.9088 0.8354 39 1 7.9483 -3.8800 -0.6043 40 1 10.2887 -3.2739 -0.4442 41 1 10.8120 -1.5737 -0.5029 42 1 10.0379 -2.2164 0.9655 43 1 7.2791 -0.2401 -0.4256 44 1 8.3348 -0.5162 0.9807 45 1 9.8210 3.7158 -0.4317 46 1 4.1006 -0.5376 -0.6368 47 1 4.0422 -1.2668 0.9972 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618888314.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:37 Heat of formation + Delta-G solvation = -43.206531 kcal Electronic energy + Delta-G solvation = -23284.670525 eV Core-core repulsion = 20080.962834 eV Total energy + Delta-G solvation = -3203.707691 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.13327 -38.33858 -37.06189 -34.51331 -32.44172 -31.74616 -29.96877 -29.24457 -27.66182 -26.86897 -25.87339 -23.69252 -22.61841 -21.56796 -20.15512 -19.37574 -18.77574 -17.09616 -16.67810 -16.53405 -15.63768 -15.32702 -14.98566 -14.64290 -14.22563 -13.92813 -13.66359 -13.35870 -13.12790 -12.99288 -12.70770 -12.54454 -12.42594 -12.28320 -12.15244 -11.97651 -11.68199 -11.51572 -11.33953 -11.32381 -10.98392 -10.92853 -10.75413 -10.58631 -10.24852 -9.89023 -9.64600 -9.54376 -9.32653 -8.86638 -8.70938 -8.35422 -7.95133 -5.87452 -3.82941 2.60123 2.93849 3.47186 3.57133 3.67083 3.98902 4.33842 4.40248 4.63588 4.64573 4.75881 4.96040 5.02960 5.14304 5.20336 5.26503 5.37436 5.40764 5.46774 5.49420 5.53888 5.59544 5.62896 5.64962 5.77914 5.78881 5.93029 6.00528 6.08943 6.14015 6.21735 6.22169 6.28197 6.31842 6.46564 6.88914 7.00767 7.17027 7.34584 7.40440 7.46767 7.58522 7.77657 8.01591 8.13852 8.72263 9.18352 9.77631 11.26083 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013579 B = 0.005488 C = 0.004127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.543018 B = 5100.667774 C = 6783.092848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.520 3.480 3 O -0.539 6.539 4 N -0.624 5.624 5 C 0.103 3.897 6 C -0.128 4.128 7 C -0.096 4.096 8 H 0.087 0.913 9 C 0.068 3.932 10 N -0.533 5.533 11 C 0.024 3.976 12 C 0.062 3.938 13 C -0.074 4.074 14 H 0.061 0.939 15 C -0.133 4.133 16 C -0.001 4.001 17 C -0.512 4.512 18 H 0.069 0.931 19 C 0.066 3.934 20 N -0.910 5.910 21 Si 0.874 3.126 22 H -0.282 1.282 23 H -0.291 1.291 24 H -0.259 1.259 25 C 0.118 3.882 26 H 0.092 0.908 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.034 0.966 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.017 0.983 38 H 0.066 0.934 39 H 0.023 0.977 40 H 0.029 0.971 41 H 0.066 0.934 42 H 0.045 0.955 43 H 0.033 0.967 44 H 0.003 0.997 45 H 0.260 0.740 46 H 0.087 0.913 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.741 -17.308 0.973 25.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.309 3.691 3 O -0.415 6.415 4 N -0.360 5.360 5 C -0.020 4.020 6 C -0.166 4.166 7 C -0.115 4.115 8 H 0.105 0.895 9 C -0.061 4.061 10 N -0.257 5.257 11 C -0.124 4.124 12 C -0.065 4.065 13 C -0.093 4.093 14 H 0.080 0.920 15 C -0.191 4.191 16 C -0.038 4.038 17 C -0.550 4.550 18 H 0.087 0.913 19 C -0.134 4.134 20 N -0.550 5.550 21 Si 0.702 3.298 22 H -0.208 1.208 23 H -0.217 1.217 24 H -0.183 1.183 25 C -0.004 4.004 26 H 0.110 0.890 27 H 0.096 0.904 28 H 0.110 0.890 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.094 0.906 34 H 0.052 0.948 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.036 0.964 38 H 0.085 0.915 39 H 0.041 0.959 40 H 0.048 0.952 41 H 0.085 0.915 42 H 0.064 0.936 43 H 0.051 0.949 44 H 0.021 0.979 45 H 0.070 0.930 46 H 0.106 0.894 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.514 -15.965 1.063 24.470 hybrid contribution -0.569 -0.509 0.498 0.911 sum -19.082 -16.474 1.561 25.258 Atomic orbital electron populations 1.21879 0.91709 1.04600 1.04550 1.20492 0.90265 0.82242 0.76129 1.90792 1.70657 1.30582 1.49512 1.48666 1.08106 1.05538 1.73683 1.22004 0.96367 0.82249 1.01424 1.22687 0.94344 0.97316 1.02291 1.22357 0.93842 0.94394 1.00954 0.89496 1.22047 0.89957 0.94833 0.99265 1.61870 1.03340 1.57094 1.03348 1.22438 1.03073 0.98102 0.88757 1.22301 0.88702 0.96567 0.98939 1.21036 0.92248 0.95977 1.00042 0.92035 1.21701 0.98123 0.98811 1.00461 1.19525 0.97776 0.91567 0.94944 1.21222 1.13223 0.91356 1.29203 0.91297 1.24989 0.95798 0.96658 0.95994 1.69927 1.37574 1.01645 1.45859 0.86858 0.83936 0.77923 0.81111 1.20783 1.21741 1.18271 1.22191 0.79063 0.97585 1.01595 0.88989 0.90423 0.88986 0.91450 0.91467 0.90352 0.90008 0.90641 0.94764 0.91842 0.90528 0.96404 0.91531 0.95919 0.95154 0.91544 0.93595 0.94905 0.97882 0.93043 0.89430 0.91333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.42 9.90 36.01 0.36 -1.06 16 2 C 0.52 7.26 7.96 -10.98 -0.09 7.17 16 3 O -0.54 -10.61 17.36 5.56 0.10 -10.51 16 4 N -0.62 -7.68 3.33 -170.66 -0.57 -8.25 16 5 C 0.10 0.79 6.11 -3.06 -0.02 0.77 16 6 C -0.13 -0.93 6.42 -24.89 -0.16 -1.09 16 7 C -0.10 -1.02 2.97 -88.59 -0.26 -1.29 16 8 H 0.09 0.95 6.38 -51.93 -0.33 0.62 16 9 C 0.07 0.79 4.41 -3.82 -0.02 0.77 16 10 N -0.53 -8.01 3.95 -242.92 -0.96 -8.97 16 11 C 0.02 0.33 9.14 60.07 0.55 0.88 16 12 C 0.06 0.99 4.39 -3.82 -0.02 0.97 16 13 C -0.07 -1.46 2.34 -90.62 -0.21 -1.67 16 14 H 0.06 1.25 6.54 -51.93 -0.34 0.91 16 15 C -0.13 -2.47 8.91 37.16 0.33 -2.14 16 16 C 0.00 -0.02 3.45 -27.88 -0.10 -0.11 16 17 C -0.51 -14.93 9.03 -34.44 -0.31 -15.24 16 18 H 0.07 2.14 7.30 -52.49 -0.38 1.76 16 19 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 20 N -0.91 -29.26 13.96 55.43 0.77 -28.49 16 21 Si 0.87 23.58 27.47 -169.99 -4.67 18.91 16 22 H -0.28 -7.43 7.11 56.52 0.40 -7.03 16 23 H -0.29 -7.91 7.11 56.52 0.40 -7.51 16 24 H -0.26 -6.89 6.54 56.52 0.37 -6.52 16 25 C 0.12 1.67 6.32 -2.65 -0.02 1.65 16 26 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.08 0.46 7.13 -51.93 -0.37 0.09 16 28 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.41 7.87 -51.93 -0.41 0.00 16 30 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.53 8.04 -51.93 -0.42 0.11 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.88 7.68 -51.93 -0.40 0.48 16 34 H 0.03 0.35 8.08 -51.93 -0.42 -0.07 16 35 H 0.06 0.80 6.52 -51.93 -0.34 0.46 16 36 H 0.08 1.16 6.42 -51.93 -0.33 0.83 16 37 H 0.02 0.21 8.09 -51.93 -0.42 -0.21 16 38 H 0.07 1.04 7.80 -51.93 -0.41 0.63 16 39 H 0.02 0.32 8.05 -51.93 -0.42 -0.09 16 40 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.07 1.37 7.12 -51.93 -0.37 1.00 16 42 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.03 0.84 6.61 -51.93 -0.34 0.49 16 44 H 0.00 0.07 7.57 -51.93 -0.39 -0.32 16 45 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 46 H 0.09 1.57 8.04 -51.93 -0.42 1.15 16 47 H 0.07 1.04 7.90 -51.93 -0.41 0.63 16 LS Contribution 363.96 15.07 5.48 5.48 Total: -1.00 -35.76 363.96 -8.52 -44.28 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -8.62 Total: -3.97 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -0.06 Total: -8.48 kcal Atomic # 7 Polarization: -44.95 SS G_CDS: -0.75 Total: -45.70 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.10 Total: -10.51 kcal Atomic # 14 Polarization: 23.58 SS G_CDS: -4.67 Total: 18.91 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.76 -8.52 -44.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618888314.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.072 kcal (2) G-P(sol) polarization free energy of solvation -35.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds