Wall clock time and date at job start Tue Mar 31 2020 05:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21277 * 120.00149 * 2 1 4 4 N 1.34775 * 120.00149 * 179.97438 * 2 1 3 5 5 C 1.47078 * 120.88391 * 184.59261 * 4 2 1 6 6 C 1.53241 * 108.52027 * 128.79070 * 5 4 2 7 7 N 1.46894 * 109.34199 * 53.83184 * 6 5 4 8 8 C 1.46897 * 111.00462 * 172.74085 * 7 6 5 9 9 C 1.52999 * 109.47393 * 294.84141 * 8 7 6 10 10 H 1.09009 * 109.47055 * 58.57367 * 9 8 7 11 11 C 1.52997 * 109.47214 * 298.57430 * 9 8 7 12 12 C 1.52994 * 109.47281 * 178.56937 * 9 8 7 13 13 C 1.50698 * 109.47238 * 185.00008 * 12 9 8 14 14 H 1.08006 * 120.00191 * 359.97438 * 13 12 9 15 15 C 1.37881 * 119.99952 * 180.02562 * 13 12 9 16 16 N 1.31513 * 120.00312 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99702 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47374 * 90.00166 * 17 15 13 19 19 H 1.48502 * 109.46883 * 209.99948 * 17 15 13 20 20 H 1.48500 * 109.47258 * 329.99585 * 17 15 13 21 21 C 1.46896 * 111.26939 * 296.89497 * 7 6 5 22 22 C 1.53000 * 109.49555 * 183.06264 * 21 7 6 23 23 C 1.52999 * 109.49232 * 303.14382 * 21 7 6 24 24 C 1.47088 * 120.88032 * 4.56501 * 4 2 1 25 25 H 1.09006 * 109.46929 * 264.36237 * 1 2 3 26 26 H 1.09001 * 109.46770 * 24.36226 * 1 2 3 27 27 H 1.09004 * 109.46941 * 144.36252 * 1 2 3 28 28 H 1.09000 * 109.62886 * 9.08313 * 5 4 2 29 29 H 1.08999 * 109.62931 * 248.49847 * 5 4 2 30 30 H 1.09002 * 109.49618 * 293.86807 * 6 5 4 31 31 H 1.09002 * 109.49061 * 173.79268 * 6 5 4 32 32 H 1.09010 * 109.46873 * 54.84054 * 8 7 6 33 33 H 1.08996 * 109.47351 * 174.83565 * 8 7 6 34 34 H 1.08995 * 109.47319 * 184.95608 * 11 9 8 35 35 H 1.09009 * 109.46853 * 304.95634 * 11 9 8 36 36 H 1.09004 * 109.47179 * 64.94760 * 11 9 8 37 37 H 1.08997 * 109.47732 * 305.00148 * 12 9 8 38 38 H 1.09004 * 109.47258 * 65.00250 * 12 9 8 39 39 H 0.96992 * 119.99923 * 180.02562 * 16 15 13 40 40 H 1.08999 * 109.47330 * 59.99786 * 22 21 7 41 41 H 1.09003 * 109.47300 * 179.97438 * 22 21 7 42 42 H 1.09001 * 109.46980 * 300.00238 * 22 21 7 43 43 H 1.09000 * 109.47435 * 65.13477 * 23 21 7 44 44 H 1.09005 * 109.47195 * 185.13738 * 23 21 7 45 45 H 1.09003 * 109.46901 * 305.13352 * 23 21 7 46 46 H 1.08999 * 109.62609 * 111.49669 * 24 4 2 47 47 H 1.09000 * 109.62765 * 350.92479 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1810 -1.1672 0.0005 5 6 3.6480 -1.1918 0.1016 6 6 4.0423 -2.1543 1.2270 7 7 3.4139 -3.4610 0.9920 8 6 3.9023 -4.4603 1.9516 9 6 5.3944 -4.7053 1.7179 10 1 5.9385 -3.7674 1.8297 11 6 5.6061 -5.2525 0.3049 12 6 5.9110 -5.7195 2.7403 13 6 7.4030 -5.8688 2.5900 14 1 7.9301 -5.2978 1.8399 15 6 8.0952 -6.7353 3.4094 16 7 7.4534 -7.4310 4.3224 17 14 9.9447 -6.9198 3.2235 18 1 10.6308 -5.9368 4.0999 19 1 10.3465 -8.2953 3.6130 20 1 10.3271 -6.6741 1.8097 21 6 1.9488 -3.3630 1.0339 22 6 1.3388 -4.7555 0.8610 23 6 1.5145 -2.7782 2.3793 24 6 1.4687 -2.4502 -0.0994 25 1 -0.3633 -0.1010 1.0228 26 1 -0.3633 0.9362 -0.4239 27 1 -0.3633 -0.8352 -0.5988 28 1 4.0162 -0.1915 0.3295 29 1 4.0743 -1.5361 -0.8407 30 1 3.7038 -1.7544 2.1829 31 1 5.1261 -2.2696 1.2439 32 1 3.7489 -4.0944 2.9670 33 1 3.3552 -5.3930 1.8151 34 1 6.6565 -5.5097 0.1684 35 1 4.9928 -6.1426 0.1642 36 1 5.3197 -4.4950 -0.4248 37 1 5.6804 -5.3706 3.7468 38 1 5.4306 -6.6832 2.5709 39 1 7.9404 -8.0402 4.8990 40 1 1.6824 -5.4052 1.6659 41 1 0.2517 -4.6824 0.8925 42 1 1.6478 -5.1709 -0.0982 43 1 1.8723 -1.7520 2.4620 44 1 0.4266 -2.7902 2.4465 45 1 1.9351 -3.3759 3.1880 46 1 1.6854 -2.9153 -1.0610 47 1 0.3959 -2.2818 -0.0045 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618888497.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:42 Heat of formation + Delta-G solvation = -37.093636 kcal Electronic energy + Delta-G solvation = -23845.690707 eV Core-core repulsion = 20642.248091 eV Total energy + Delta-G solvation = -3203.442616 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.69230 -38.77539 -35.83399 -34.27813 -33.13451 -31.96740 -30.19395 -28.16767 -27.31980 -26.98135 -26.67385 -24.74894 -22.75211 -22.47857 -19.88264 -18.96635 -18.25071 -17.25919 -16.33886 -16.15749 -15.69653 -15.54074 -14.72048 -14.54532 -14.36331 -14.16657 -13.96417 -13.55814 -13.15724 -12.85365 -12.61606 -12.49544 -12.37733 -12.24018 -12.02219 -11.81917 -11.70037 -11.44545 -11.35804 -11.16319 -11.08471 -10.86345 -10.77234 -10.66079 -10.27580 -10.19076 -9.91180 -9.56696 -9.15245 -9.00192 -8.76327 -8.33304 -8.00427 -5.98440 -3.99400 2.47905 2.86777 3.32633 3.39156 3.42390 3.94470 4.38563 4.47844 4.59222 4.81387 4.84982 4.96504 5.03840 5.12359 5.17947 5.30358 5.34299 5.37987 5.47719 5.52553 5.62178 5.62937 5.71984 5.75131 5.83398 5.87044 5.90863 6.00342 6.05291 6.21012 6.24740 6.37081 6.41888 6.53159 6.68656 6.99715 7.10532 7.20394 7.27321 7.34954 7.40952 7.68522 7.84184 8.01698 8.02533 8.45847 9.06972 9.64129 11.13086 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029885 B = 0.003745 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.698538 B = 7475.472288 C = 7918.180095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.511 3.489 3 O -0.553 6.553 4 N -0.610 5.610 5 C 0.117 3.883 6 C 0.035 3.965 7 N -0.520 5.520 8 C 0.056 3.944 9 C -0.081 4.081 10 H 0.054 0.946 11 C -0.120 4.120 12 C 0.028 3.972 13 C -0.512 4.512 14 H 0.056 0.944 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.889 3.111 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.091 3.909 22 C -0.143 4.143 23 C -0.180 4.180 24 C 0.122 3.878 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.039 0.961 31 H 0.096 0.904 32 H 0.029 0.971 33 H 0.077 0.923 34 H 0.054 0.946 35 H 0.038 0.962 36 H 0.040 0.960 37 H 0.011 0.989 38 H 0.015 0.985 39 H 0.259 0.741 40 H 0.068 0.932 41 H 0.058 0.942 42 H 0.067 0.933 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.062 0.938 46 H 0.078 0.922 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.482 9.257 -8.370 20.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.300 3.700 3 O -0.431 6.431 4 N -0.343 5.343 5 C -0.006 4.006 6 C -0.094 4.094 7 N -0.245 5.245 8 C -0.071 4.071 9 C -0.100 4.100 10 H 0.072 0.928 11 C -0.178 4.178 12 C -0.009 4.009 13 C -0.550 4.550 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.537 5.537 17 Si 0.717 3.283 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.199 1.199 21 C 0.000 4.000 22 C -0.201 4.201 23 C -0.238 4.238 24 C -0.002 4.002 25 H 0.110 0.890 26 H 0.109 0.891 27 H 0.101 0.899 28 H 0.109 0.891 29 H 0.092 0.908 30 H 0.057 0.943 31 H 0.114 0.886 32 H 0.047 0.953 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.029 0.971 38 H 0.034 0.966 39 H 0.069 0.931 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.086 0.914 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.096 0.904 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.003 9.536 -8.716 20.567 hybrid contribution 0.807 -0.077 0.965 1.261 sum -15.196 9.459 -7.750 19.505 Atomic orbital electron populations 1.21960 0.92158 1.04814 1.04535 1.20767 0.90540 0.83066 0.75620 1.90705 1.70767 1.31103 1.50543 1.48220 1.07706 1.05969 1.72443 1.21739 0.79056 1.00358 0.99398 1.22560 1.01038 0.89148 0.96614 1.62221 1.03314 1.06910 1.52010 1.22447 0.97965 0.94504 0.92186 1.21236 0.91549 0.99904 0.97302 0.92768 1.21558 1.01216 0.99134 0.95855 1.19102 0.95688 0.93274 0.92862 1.21230 0.92856 1.23467 1.17476 0.92583 1.25013 0.98185 0.95892 0.95419 1.69960 1.35596 1.27098 1.21040 0.86642 0.86008 0.77246 0.78401 1.20775 1.21321 1.19869 1.21385 0.89329 0.95526 0.93749 1.21921 0.99646 0.95058 1.03433 1.22451 1.01368 1.01656 0.98363 1.21970 0.96267 0.82855 0.99071 0.89012 0.89105 0.89886 0.89095 0.90755 0.94275 0.88607 0.95294 0.90432 0.92705 0.94310 0.94102 0.97069 0.96623 0.93116 0.91306 0.92349 0.91402 0.92398 0.92405 0.91871 0.90423 0.89505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.29 9.38 36.01 0.34 -0.95 16 2 C 0.51 6.06 7.81 -10.98 -0.09 5.98 16 3 O -0.55 -8.89 16.57 5.56 0.09 -8.80 16 4 N -0.61 -6.81 2.40 -172.46 -0.41 -7.22 16 5 C 0.12 1.44 6.58 -3.60 -0.02 1.42 16 6 C 0.03 0.47 5.09 -3.70 -0.02 0.45 16 7 N -0.52 -6.91 3.82 -218.69 -0.83 -7.75 16 8 C 0.06 0.89 3.59 -3.83 -0.01 0.88 16 9 C -0.08 -1.58 2.20 -90.62 -0.20 -1.78 16 10 H 0.05 1.08 6.32 -51.92 -0.33 0.76 16 11 C -0.12 -2.23 8.86 37.16 0.33 -1.90 16 12 C 0.03 0.71 4.45 -27.89 -0.12 0.58 16 13 C -0.51 -14.13 8.34 -34.44 -0.29 -14.42 16 14 H 0.06 1.51 7.08 -52.48 -0.37 1.14 16 15 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 16 N -0.90 -26.75 13.29 55.43 0.74 -26.01 16 17 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 21 C 0.09 0.97 0.69 -131.48 -0.09 0.88 16 22 C -0.14 -1.39 8.03 37.16 0.30 -1.09 16 23 C -0.18 -1.92 7.67 37.16 0.28 -1.63 16 24 C 0.12 1.11 5.09 -3.60 -0.02 1.09 16 25 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.08 0.43 6.38 -51.93 -0.33 0.10 16 28 H 0.09 1.20 7.09 -51.93 -0.37 0.84 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.04 0.55 6.22 -51.93 -0.32 0.22 16 31 H 0.10 1.38 6.11 -51.93 -0.32 1.06 16 32 H 0.03 0.49 6.85 -51.92 -0.36 0.13 16 33 H 0.08 1.24 5.66 -51.93 -0.29 0.95 16 34 H 0.05 1.12 6.82 -51.93 -0.35 0.76 16 35 H 0.04 0.70 8.14 -51.92 -0.42 0.28 16 36 H 0.04 0.68 7.80 -51.93 -0.40 0.27 16 37 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 40 H 0.07 0.77 6.12 -51.93 -0.32 0.45 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.68 6.10 -51.93 -0.32 0.37 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.77 6.58 -51.93 -0.34 0.43 16 46 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.09 0.57 5.62 -51.93 -0.29 0.28 16 LS Contribution 350.65 15.07 5.28 5.28 Total: -1.00 -31.67 350.65 -7.94 -39.61 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -8.08 Total: -2.65 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: 0.29 Total: -9.03 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: -0.51 Total: -40.98 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.09 Total: -8.80 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.67 -7.94 -39.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618888497.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.514 kcal (2) G-P(sol) polarization free energy of solvation -31.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds