Wall clock time and date at job start Tue Mar 31 2020 05:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21277 * 120.00091 * 2 1 4 4 N 1.34781 * 119.99998 * 180.02562 * 2 1 3 5 5 C 1.47083 * 120.88026 * 359.97438 * 4 2 1 6 6 C 1.53235 * 108.52007 * 231.20781 * 5 4 2 7 7 N 1.46909 * 109.33702 * 306.16732 * 6 5 4 8 8 C 1.46902 * 110.99562 * 187.25324 * 7 6 5 9 9 C 1.53001 * 109.47042 * 51.92076 * 8 7 6 10 10 H 1.09004 * 109.46881 * 301.90678 * 9 8 7 11 11 C 1.52998 * 109.47459 * 61.91007 * 9 8 7 12 12 C 1.53005 * 109.46699 * 181.91224 * 9 8 7 13 13 C 1.50702 * 109.46744 * 174.99605 * 12 9 8 14 14 H 1.07996 * 120.00075 * 359.97438 * 13 12 9 15 15 C 1.37879 * 119.99988 * 180.02562 * 13 12 9 16 16 N 1.31518 * 119.99779 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00039 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47635 * 90.00096 * 17 15 13 19 19 H 1.48500 * 109.47277 * 209.99909 * 17 15 13 20 20 H 1.48500 * 109.47110 * 329.99688 * 17 15 13 21 21 C 1.46900 * 111.26621 * 63.10846 * 7 6 5 22 22 C 1.52995 * 109.49354 * 56.85236 * 21 7 6 23 23 C 1.52999 * 109.48884 * 176.90582 * 21 7 6 24 24 C 1.47076 * 120.88122 * 180.02562 * 4 2 1 25 25 H 1.09003 * 109.47062 * 269.99580 * 1 2 3 26 26 H 1.08995 * 109.47306 * 29.99930 * 1 2 3 27 27 H 1.08999 * 109.47274 * 150.00361 * 1 2 3 28 28 H 1.09000 * 109.62856 * 111.49744 * 5 4 2 29 29 H 1.09007 * 109.62580 * 350.91516 * 5 4 2 30 30 H 1.09001 * 109.49374 * 186.21607 * 6 5 4 31 31 H 1.09001 * 109.49791 * 66.12739 * 6 5 4 32 32 H 1.09004 * 109.46884 * 171.91514 * 8 7 6 33 33 H 1.08997 * 109.47351 * 291.91594 * 8 7 6 34 34 H 1.08997 * 109.46795 * 179.97438 * 11 9 8 35 35 H 1.08998 * 109.47404 * 300.00390 * 11 9 8 36 36 H 1.09005 * 109.46640 * 60.00197 * 11 9 8 37 37 H 1.08998 * 109.47269 * 294.99828 * 12 9 8 38 38 H 1.09001 * 109.47346 * 54.99848 * 12 9 8 39 39 H 0.97000 * 119.99771 * 180.02562 * 16 15 13 40 40 H 1.09002 * 109.47246 * 60.00459 * 22 21 7 41 41 H 1.08999 * 109.47670 * 299.99922 * 22 21 7 42 42 H 1.09007 * 109.47089 * 179.97438 * 22 21 7 43 43 H 1.08995 * 109.47275 * 299.94707 * 23 21 7 44 44 H 1.09000 * 109.47226 * 59.94585 * 23 21 7 45 45 H 1.09007 * 109.46884 * 179.97438 * 23 21 7 46 46 H 1.08998 * 109.62835 * 9.08452 * 24 4 2 47 47 H 1.08998 * 109.62920 * 248.50460 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4651 -2.4522 -0.0005 6 6 2.0239 -3.3206 1.1316 7 7 3.4828 -3.4222 0.9919 8 6 4.0380 -4.3838 1.9538 9 6 3.2826 -5.7097 1.8432 10 1 2.2218 -5.5400 2.0278 11 6 3.4699 -6.2878 0.4390 12 6 3.8290 -6.6957 2.8777 13 6 3.0054 -7.9575 2.8529 14 1 2.1751 -8.0470 2.1682 15 6 3.3112 -8.9973 3.7052 16 7 4.3215 -8.8876 4.5402 17 14 2.2908 -10.5615 3.6740 18 1 2.8776 -11.5161 2.6995 19 1 2.2848 -11.1757 5.0260 20 1 0.8988 -10.2365 3.2718 21 6 4.1243 -2.1080 1.1314 22 6 3.7425 -1.4942 2.4798 23 6 5.6437 -2.2711 1.0565 24 6 3.6515 -1.1899 0.0000 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3633 0.8899 -0.5138 27 1 -0.3634 -0.8900 -0.5138 28 1 1.6152 -2.9549 -0.9559 29 1 0.4013 -2.2787 0.1620 30 1 1.5833 -4.3161 1.0777 31 1 1.7813 -2.8664 2.0922 32 1 5.0933 -4.5476 1.7359 33 1 3.9327 -3.9888 2.9643 34 1 2.9321 -7.2326 0.3604 35 1 3.0807 -5.5853 -0.2980 36 1 4.5307 -6.4574 0.2545 37 1 4.8659 -6.9338 2.6405 38 1 3.7770 -6.2474 3.8699 39 1 4.5368 -9.6193 5.1395 40 1 4.0769 -2.1487 3.2848 41 1 2.6601 -1.3773 2.5325 42 1 4.2190 -0.5192 2.5831 43 1 5.9790 -2.9253 1.8612 44 1 5.9153 -2.7085 0.0957 45 1 6.1193 -1.2957 1.1596 46 1 4.0331 -0.1820 0.1630 47 1 4.0122 -1.5710 -0.9553 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618888498.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:44 Heat of formation + Delta-G solvation = -35.880214 kcal Electronic energy + Delta-G solvation = -23878.085368 eV Core-core repulsion = 20674.695370 eV Total energy + Delta-G solvation = -3203.389998 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.68344 -38.75780 -35.80499 -34.63554 -32.93169 -31.62065 -30.31902 -28.50463 -27.34508 -26.78314 -26.47314 -24.67060 -23.02772 -22.46397 -19.74835 -19.01004 -18.18998 -17.26438 -16.37338 -16.12949 -15.68806 -15.49688 -14.76296 -14.56330 -14.39291 -14.19792 -13.78877 -13.55463 -13.09984 -12.92741 -12.55351 -12.52743 -12.32365 -12.22870 -11.94207 -11.79788 -11.70001 -11.40492 -11.28292 -11.12898 -11.07113 -10.87785 -10.85216 -10.68323 -10.31861 -10.20362 -9.87333 -9.60359 -9.18424 -8.99801 -8.76541 -8.35337 -7.98494 -6.00312 -4.01686 2.49668 2.88044 3.30645 3.37353 3.39673 3.97833 4.41177 4.45520 4.72038 4.82760 4.89953 5.02768 5.06476 5.10217 5.16336 5.28281 5.35677 5.44146 5.57667 5.58179 5.64972 5.70221 5.74625 5.80538 5.83571 5.86319 5.92112 6.01705 6.07264 6.19687 6.27010 6.39030 6.42326 6.51298 6.61581 6.96875 7.08097 7.15748 7.26410 7.35089 7.40850 7.65991 7.81610 7.99522 8.03776 8.43058 9.04665 9.61934 11.11170 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027397 B = 0.003853 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.745897 B = 7266.009407 C = 7788.081465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.511 3.489 3 O -0.555 6.555 4 N -0.610 5.610 5 C 0.109 3.891 6 C 0.028 3.972 7 N -0.521 5.521 8 C 0.057 3.943 9 C -0.086 4.086 10 H 0.056 0.944 11 C -0.123 4.123 12 C 0.028 3.972 13 C -0.513 4.513 14 H 0.056 0.944 15 C 0.056 3.944 16 N -0.896 5.896 17 Si 0.889 3.111 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.092 3.908 22 C -0.177 4.177 23 C -0.141 4.141 24 C 0.128 3.872 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.101 0.899 31 H 0.041 0.959 32 H 0.075 0.925 33 H 0.031 0.969 34 H 0.053 0.947 35 H 0.041 0.959 36 H 0.041 0.959 37 H 0.016 0.984 38 H 0.011 0.989 39 H 0.259 0.741 40 H 0.061 0.939 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.058 0.942 46 H 0.090 0.910 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.753 14.940 -8.905 18.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.300 3.700 3 O -0.433 6.433 4 N -0.343 5.343 5 C -0.014 4.014 6 C -0.100 4.100 7 N -0.245 5.245 8 C -0.070 4.070 9 C -0.105 4.105 10 H 0.075 0.925 11 C -0.180 4.180 12 C -0.009 4.009 13 C -0.551 4.551 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.717 3.283 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C 0.002 3.998 22 C -0.235 4.235 23 C -0.199 4.199 24 C 0.006 3.994 25 H 0.111 0.889 26 H 0.109 0.891 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.106 0.894 30 H 0.119 0.881 31 H 0.059 0.941 32 H 0.094 0.906 33 H 0.049 0.951 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.034 0.966 38 H 0.030 0.970 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.077 0.923 46 H 0.109 0.891 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.248 15.232 -9.248 18.319 hybrid contribution -0.684 -0.811 1.033 1.481 sum -4.932 14.421 -8.215 17.314 Atomic orbital electron populations 1.21958 0.92048 1.04779 1.04752 1.20785 0.90583 0.83052 0.75531 1.90692 1.70756 1.31122 1.50774 1.48237 1.07215 1.06092 1.72762 1.22002 0.96109 0.83082 1.00198 1.22643 0.89651 1.00991 0.96730 1.62264 1.03281 1.06811 1.52142 1.22398 0.99827 0.92330 0.92396 1.21332 0.98522 0.93115 0.97486 0.92540 1.21590 1.00796 0.99845 0.95757 1.19105 0.96372 0.92759 0.92685 1.21216 1.14379 0.99828 1.19704 0.92617 1.25015 0.95292 0.98620 0.95562 1.69966 1.28330 1.32408 1.22892 0.86643 0.80695 0.83730 0.77218 1.20713 1.21336 1.19931 1.21371 0.95224 0.89458 0.93767 1.22402 1.01812 1.01165 0.98152 1.21868 0.92940 1.01833 1.03211 1.21719 0.79081 1.00265 0.98370 0.88928 0.89074 0.89819 0.90397 0.89378 0.88060 0.94103 0.90636 0.95102 0.92818 0.94007 0.94031 0.96578 0.97027 0.93088 0.91987 0.92513 0.92400 0.91522 0.91535 0.92337 0.89129 0.90902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.35 9.45 36.00 0.34 -1.01 16 2 C 0.51 6.10 7.82 -10.98 -0.09 6.02 16 3 O -0.55 -8.79 16.55 5.56 0.09 -8.70 16 4 N -0.61 -6.85 2.48 -172.50 -0.43 -7.28 16 5 C 0.11 1.05 6.36 -3.60 -0.02 1.03 16 6 C 0.03 0.34 4.78 -3.70 -0.02 0.33 16 7 N -0.52 -6.96 3.85 -218.71 -0.84 -7.80 16 8 C 0.06 0.92 3.65 -3.82 -0.01 0.91 16 9 C -0.09 -1.63 1.85 -90.62 -0.17 -1.80 16 10 H 0.06 1.07 6.04 -51.93 -0.31 0.76 16 11 C -0.12 -2.21 8.79 37.16 0.33 -1.88 16 12 C 0.03 0.70 4.45 -27.88 -0.12 0.57 16 13 C -0.51 -13.93 8.41 -34.44 -0.29 -14.22 16 14 H 0.06 1.47 7.06 -52.49 -0.37 1.10 16 15 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 16 N -0.90 -26.54 13.29 55.43 0.74 -25.81 16 17 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 21 C 0.09 1.12 0.69 -131.51 -0.09 1.03 16 22 C -0.18 -2.22 7.68 37.16 0.29 -1.93 16 23 C -0.14 -1.60 8.00 37.16 0.30 -1.30 16 24 C 0.13 1.52 5.27 -3.63 -0.02 1.50 16 25 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.08 0.48 6.26 -51.93 -0.33 0.15 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.09 0.63 5.64 -51.92 -0.29 0.34 16 30 H 0.10 1.31 5.66 -51.93 -0.29 1.01 16 31 H 0.04 0.52 6.10 -51.93 -0.32 0.21 16 32 H 0.08 1.25 6.45 -51.93 -0.33 0.91 16 33 H 0.03 0.52 6.36 -51.93 -0.33 0.19 16 34 H 0.05 1.04 6.95 -51.93 -0.36 0.68 16 35 H 0.04 0.66 7.56 -51.93 -0.39 0.26 16 36 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.06 0.83 6.52 -51.93 -0.34 0.49 16 41 H 0.06 0.74 5.93 -51.93 -0.31 0.43 16 42 H 0.06 0.70 8.14 -51.92 -0.42 0.27 16 43 H 0.07 0.82 6.41 -51.93 -0.33 0.48 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.09 1.15 7.06 -51.93 -0.37 0.79 16 47 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 349.38 15.07 5.27 5.27 Total: -1.00 -31.23 349.38 -7.91 -39.15 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -8.04 Total: -1.80 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: 0.32 Total: -9.28 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: -0.53 Total: -40.88 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.09 Total: -8.70 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.23 -7.91 -39.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618888498.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.267 kcal (2) G-P(sol) polarization free energy of solvation -31.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds