Wall clock time and date at job start Tue Mar 31 2020 05:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08988 * 109.47444 * 2 1 4 4 C 1.53003 * 109.47260 * 120.00655 * 2 1 3 5 5 C 1.50694 * 109.47303 * 183.57169 * 4 2 1 6 6 H 1.08010 * 120.00007 * 5.08033 * 5 4 2 7 7 C 1.37874 * 120.00262 * 185.07848 * 5 4 2 8 8 N 1.31519 * 120.00151 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00426 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47018 * 59.99962 * 9 7 5 11 11 H 1.48498 * 109.47253 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47051 * 300.00683 * 9 7 5 13 13 N 1.46904 * 109.47106 * 240.00021 * 2 1 3 14 14 C 1.46850 * 111.00058 * 72.95309 * 13 2 1 15 15 C 1.53040 * 109.52464 * 174.15947 * 14 13 2 16 16 C 1.53121 * 109.27565 * 59.18349 * 15 14 13 17 17 N 1.46894 * 109.57560 * 182.40700 * 16 15 14 18 18 C 1.47014 * 110.99827 * 58.34999 * 17 16 15 19 19 C 1.53103 * 109.25483 * 177.60709 * 18 17 16 20 20 O 1.43016 * 109.25614 * 56.85315 * 19 18 17 21 21 C 1.43010 * 113.74029 * 301.32240 * 20 19 18 22 22 C 1.47016 * 111.00098 * 294.71849 * 17 16 15 23 23 C 1.53120 * 109.16108 * 302.34450 * 16 15 14 24 24 C 1.46854 * 111.00034 * 308.74664 * 13 2 1 25 25 H 1.09002 * 109.47399 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47061 * 299.99767 * 1 2 3 27 27 H 1.09003 * 109.47123 * 59.99865 * 1 2 3 28 28 H 1.09000 * 109.46703 * 303.56821 * 4 2 1 29 29 H 1.08997 * 109.47351 * 63.56712 * 4 2 1 30 30 H 0.96996 * 120.00427 * 179.97438 * 8 7 5 31 31 H 1.08996 * 109.46090 * 294.18324 * 14 13 2 32 32 H 1.09004 * 109.45893 * 54.14937 * 14 13 2 33 33 H 1.08997 * 109.50522 * 299.24566 * 15 14 13 34 34 H 1.08994 * 109.53362 * 179.14045 * 15 14 13 35 35 H 1.09002 * 109.52288 * 62.24951 * 16 15 14 36 36 H 1.08997 * 109.50797 * 297.54039 * 18 17 16 37 37 H 1.09005 * 109.50746 * 57.67538 * 18 17 16 38 38 H 1.08990 * 109.50836 * 296.91414 * 19 18 17 39 39 H 1.09002 * 109.53753 * 176.80599 * 19 18 17 40 40 H 1.09000 * 109.50827 * 298.74293 * 21 20 19 41 41 H 1.08996 * 109.54457 * 178.62927 * 21 20 19 42 42 H 1.09004 * 109.50540 * 302.32575 * 22 17 16 43 43 H 1.08997 * 109.50667 * 62.40677 * 22 17 16 44 44 H 1.08992 * 109.50324 * 297.71191 * 23 16 15 45 45 H 1.08999 * 109.53492 * 177.61178 * 23 16 15 46 46 H 1.09001 * 109.46302 * 305.86026 * 24 13 2 47 47 H 1.09001 * 109.45698 * 65.83346 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5444 -0.6452 1.2942 6 1 4.0781 -0.0646 0.5562 7 6 4.2395 -1.3166 2.2775 8 7 3.5898 -2.0241 3.1759 9 14 6.1044 -1.2228 2.3330 10 1 6.5241 0.1919 2.4993 11 1 6.6066 -2.0264 3.4763 12 1 6.6649 -1.7597 1.0670 13 7 2.0197 -0.6925 -1.1995 14 6 1.8162 0.1275 -2.4005 15 6 2.4663 -0.5583 -3.6043 16 6 1.8401 -1.9424 -3.7965 17 7 2.4992 -2.6297 -4.9150 18 6 3.9437 -2.7611 -4.6749 19 6 4.5798 -3.5336 -5.8336 20 8 4.2943 -2.8602 -7.0626 21 6 2.8966 -2.7154 -7.3285 22 6 2.2433 -1.9347 -6.1849 23 6 2.0233 -2.7593 -2.5145 24 6 1.3861 -2.0096 -1.3423 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6254 -0.2459 2.1380 29 1 1.7299 -1.7658 1.2177 30 1 4.0788 -2.4967 3.8675 31 1 0.7481 0.2458 -2.5829 32 1 2.2698 1.1076 -2.2523 33 1 3.5367 -0.6645 -3.4285 34 1 2.3022 0.0427 -4.4987 35 1 0.7769 -1.8346 -4.0110 36 1 4.3931 -1.7704 -4.6078 37 1 4.1101 -3.3010 -3.7427 38 1 4.1690 -4.5426 -5.8674 39 1 5.6590 -3.5847 -5.6888 40 1 2.4368 -3.7007 -7.4057 41 1 2.7576 -2.1745 -8.2645 42 1 1.1685 -1.8712 -6.3549 43 1 2.6648 -0.9304 -6.1415 44 1 3.0867 -2.9000 -2.3215 45 1 1.5426 -3.7308 -2.6295 46 1 1.5272 -2.5818 -0.4253 47 1 0.3200 -1.8813 -1.5298 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690341384.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:49 Heat of formation + Delta-G solvation = -38.322092 kcal Electronic energy + Delta-G solvation = -23939.044077 eV Core-core repulsion = 20735.548191 eV Total energy + Delta-G solvation = -3203.495886 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.18745 -38.58715 -36.29149 -33.45920 -32.09716 -31.35578 -30.53513 -29.27995 -27.30100 -26.55390 -24.27332 -23.45412 -23.09198 -22.17628 -20.88115 -19.29656 -18.51637 -16.80531 -16.23622 -16.13807 -15.43760 -15.18678 -15.09734 -14.79456 -14.43821 -14.29797 -14.05646 -13.68636 -13.37225 -13.23008 -12.63539 -12.36314 -12.11870 -11.87401 -11.78788 -11.66927 -11.57540 -11.29894 -11.14802 -10.89536 -10.74428 -10.60575 -10.56070 -10.44695 -10.31228 -10.04615 -9.88469 -9.69865 -9.15440 -8.96246 -8.29977 -8.24218 -7.43310 -5.87412 -3.84829 3.40894 3.44850 3.48278 3.65595 3.82031 4.52463 4.57768 4.74868 4.86867 4.88326 5.01915 5.08116 5.18462 5.21627 5.31951 5.41995 5.48574 5.49707 5.58016 5.62218 5.69035 5.70595 5.77070 5.83253 5.86715 5.92799 5.96586 6.03725 6.05064 6.12429 6.24643 6.38851 6.41624 6.58553 6.60559 6.73651 6.93309 6.99392 7.01700 7.05052 7.55434 7.69858 7.93977 8.04909 8.13760 8.59461 9.19931 9.76351 11.24596 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017726 B = 0.004814 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.259243 B = 5815.089844 C = 6865.759967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.087 3.913 3 H 0.067 0.933 4 C 0.031 3.969 5 C -0.487 4.487 6 H 0.057 0.943 7 C 0.052 3.948 8 N -0.904 5.904 9 Si 0.889 3.111 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.279 1.279 13 N -0.508 5.508 14 C 0.060 3.940 15 C -0.146 4.146 16 C 0.087 3.913 17 N -0.530 5.530 18 C 0.010 3.990 19 C 0.064 3.936 20 O -0.389 6.389 21 C 0.065 3.935 22 C 0.015 3.985 23 C -0.107 4.107 24 C 0.059 3.941 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.037 0.963 28 H 0.014 0.986 29 H 0.022 0.978 30 H 0.257 0.743 31 H 0.022 0.978 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.056 0.944 35 H 0.076 0.924 36 H 0.049 0.951 37 H 0.094 0.906 38 H 0.057 0.943 39 H 0.096 0.904 40 H 0.057 0.943 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.045 0.955 44 H 0.074 0.926 45 H 0.066 0.934 46 H 0.089 0.911 47 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.450 -0.826 -18.130 18.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.021 4.021 3 H 0.085 0.915 4 C -0.006 4.006 5 C -0.526 4.526 6 H 0.076 0.924 7 C -0.148 4.148 8 N -0.545 5.545 9 Si 0.717 3.283 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.204 1.204 13 N -0.232 5.232 14 C -0.069 4.069 15 C -0.186 4.186 16 C -0.021 4.021 17 N -0.254 5.254 18 C -0.118 4.118 19 C -0.013 4.013 20 O -0.307 6.307 21 C -0.012 4.012 22 C -0.114 4.114 23 C -0.145 4.145 24 C -0.070 4.070 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.057 0.943 28 H 0.032 0.968 29 H 0.041 0.959 30 H 0.067 0.933 31 H 0.040 0.960 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.067 0.933 37 H 0.112 0.888 38 H 0.076 0.924 39 H 0.114 0.886 40 H 0.075 0.925 41 H 0.112 0.888 42 H 0.100 0.900 43 H 0.063 0.937 44 H 0.093 0.907 45 H 0.085 0.915 46 H 0.107 0.893 47 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -3.960 -1.431 -18.095 18.578 hybrid contribution 0.235 0.933 0.300 1.008 sum -3.725 -0.497 -17.794 18.187 Atomic orbital electron populations 1.22518 0.99786 1.01359 1.00521 1.21907 0.90018 0.98156 0.92030 0.91518 1.19177 0.96310 0.95504 0.89606 1.21087 0.91567 1.28897 1.11028 0.92439 1.24977 0.97892 0.95886 0.96008 1.69948 1.35206 1.32899 1.16486 0.86718 0.86550 0.77797 0.77211 1.20567 1.21658 1.20437 1.62038 1.57788 1.02189 1.01201 1.21959 0.97269 0.96949 0.90765 1.22232 1.01990 0.96884 0.97455 1.21807 0.97729 0.91990 0.90576 1.62490 1.10589 1.50252 1.02045 1.22889 0.88246 1.00767 0.99886 1.22699 1.00351 0.95241 0.83010 1.87964 1.23710 1.79003 1.40035 1.22630 0.81681 0.99822 0.97083 1.22774 1.01252 0.96688 0.90656 1.21657 1.02575 0.97850 0.92398 1.22055 0.94592 0.91407 0.98897 0.92741 0.92615 0.94345 0.96780 0.95941 0.93296 0.95962 0.91420 0.90672 0.92499 0.90614 0.93254 0.88772 0.92440 0.88554 0.92493 0.88830 0.90024 0.93678 0.90732 0.91502 0.89299 0.95851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.12 8.40 37.16 0.31 -2.81 16 2 C 0.09 1.75 2.26 -67.71 -0.15 1.59 16 3 H 0.07 1.37 7.93 -51.94 -0.41 0.96 16 4 C 0.03 0.78 4.40 -27.88 -0.12 0.66 16 5 C -0.49 -13.55 8.80 -34.44 -0.30 -13.85 16 6 H 0.06 1.60 7.75 -52.48 -0.41 1.20 16 7 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 8 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 9 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 N -0.51 -9.46 4.26 -226.68 -0.97 -10.43 16 14 C 0.06 0.92 5.18 -3.83 -0.02 0.90 16 15 C -0.15 -2.01 4.68 -26.65 -0.12 -2.14 16 16 C 0.09 1.14 2.29 -67.59 -0.16 0.99 16 17 N -0.53 -6.44 4.72 -226.18 -1.07 -7.50 16 18 C 0.01 0.12 4.86 -3.71 -0.02 0.11 16 19 C 0.06 0.70 7.01 37.21 0.26 0.96 16 20 O -0.39 -4.69 10.83 -35.23 -0.38 -5.07 16 21 C 0.06 0.64 7.01 37.21 0.26 0.90 16 22 C 0.01 0.15 5.32 -3.71 -0.02 0.13 16 23 C -0.11 -1.59 5.25 -26.65 -0.14 -1.73 16 24 C 0.06 1.01 4.47 -3.83 -0.02 1.00 16 25 H 0.05 0.92 6.44 -51.93 -0.33 0.59 16 26 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.04 0.58 6.93 -51.93 -0.36 0.22 16 28 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.02 0.60 6.39 -51.93 -0.33 0.27 16 30 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.02 0.33 6.98 -51.93 -0.36 -0.03 16 32 H 0.07 1.06 7.98 -51.93 -0.41 0.64 16 33 H 0.07 1.16 6.32 -51.93 -0.33 0.83 16 34 H 0.06 0.70 6.72 -51.93 -0.35 0.35 16 35 H 0.08 0.98 8.12 -51.93 -0.42 0.56 16 36 H 0.05 0.66 6.37 -51.93 -0.33 0.33 16 37 H 0.09 1.21 6.18 -51.93 -0.32 0.89 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.08 0.76 8.13 -51.93 -0.42 0.33 16 43 H 0.05 0.50 6.63 -51.93 -0.34 0.16 16 44 H 0.07 1.23 6.27 -51.93 -0.33 0.90 16 45 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.09 1.78 6.28 -51.93 -0.33 1.45 16 47 H 0.02 0.38 6.57 -51.93 -0.34 0.04 16 LS Contribution 342.63 15.07 5.16 5.16 Total: -1.00 -29.87 342.63 -10.10 -39.97 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -8.23 Total: -0.85 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: -0.34 Total: -11.91 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: -1.30 Total: -44.31 kcal Atomic # 8 Polarization: -4.69 SS G_CDS: -0.38 Total: -5.07 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.87 -10.10 -39.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690341384.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.649 kcal (2) G-P(sol) polarization free energy of solvation -29.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds