Wall clock time and date at job start Tue Mar 31 2020 05:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 C 1.34781 * 119.99894 * 240.00308 * 12 2 1 15 15 O 1.21280 * 120.00291 * 359.97438 * 14 12 2 16 16 C 1.50699 * 119.99910 * 180.02562 * 14 12 2 17 17 C 1.53000 * 109.47242 * 180.02562 * 16 14 12 18 18 C 1.53003 * 109.47194 * 179.97438 * 17 16 14 19 19 C 1.52996 * 109.46857 * 179.97438 * 18 17 16 20 20 N 1.46903 * 109.46915 * 179.97438 * 19 18 17 21 21 C 1.48536 * 110.99955 * 52.60416 * 20 19 18 22 22 C 1.54937 * 103.22698 * 159.72086 * 21 20 19 23 23 C 1.54593 * 102.92207 * 322.58004 * 22 21 20 24 24 C 1.47900 * 111.00044 * 169.99659 * 20 19 18 25 25 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 26 26 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 27 27 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 30 30 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 31 31 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 32 32 H 1.09005 * 109.46708 * 299.99547 * 16 14 12 33 33 H 1.09000 * 109.47504 * 59.99304 * 16 14 12 34 34 H 1.09005 * 109.46782 * 299.99358 * 17 16 14 35 35 H 1.09000 * 109.47104 * 59.99474 * 17 16 14 36 36 H 1.09005 * 109.46763 * 299.99408 * 18 17 16 37 37 H 1.09000 * 109.47492 * 59.99751 * 18 17 16 38 38 H 1.09005 * 109.46997 * 299.99322 * 19 18 17 39 39 H 1.08998 * 109.47941 * 59.99837 * 19 18 17 40 40 H 1.09006 * 110.66218 * 278.15290 * 21 20 19 41 41 H 1.09004 * 110.67030 * 41.28328 * 21 20 19 42 42 H 1.09001 * 110.72347 * 204.22566 * 22 21 20 43 43 H 1.09001 * 110.72788 * 80.94319 * 22 21 20 44 44 H 1.08996 * 110.31337 * 263.04332 * 23 22 21 45 45 H 1.09006 * 110.30515 * 140.87523 * 23 22 21 46 46 H 1.09003 * 109.92014 * 333.50612 * 24 20 19 47 47 H 1.08996 * 109.91795 * 94.60746 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 6 2.7931 -0.0354 2.0834 15 8 3.0865 1.1256 1.8912 16 6 3.2959 -0.7459 3.3136 17 6 4.1452 0.2160 4.1468 18 6 4.6551 -0.5052 5.3962 19 6 5.5049 0.4566 6.2290 20 7 5.9940 -0.2356 7.4288 21 6 6.6739 -1.5066 7.0701 22 6 7.5472 -1.8050 8.3146 23 6 8.0282 -0.4000 8.7444 24 6 7.0074 0.5785 8.1344 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.7088 1.1611 -3.4845 29 1 2.4158 -2.7376 0.9718 30 1 1.6238 -2.2851 2.5003 31 1 0.6905 -2.3002 0.9847 32 1 2.4483 -1.0888 3.9070 33 1 3.9016 -1.6021 3.0167 34 1 4.9929 0.5593 3.5536 35 1 3.5391 1.0719 4.4437 36 1 3.8073 -0.8481 5.9892 37 1 5.2612 -1.3613 5.0997 38 1 6.3528 0.7991 5.6357 39 1 4.8994 1.3130 6.5256 40 1 5.9449 -2.3015 6.9121 41 1 7.2971 -1.3733 6.1858 42 1 8.3940 -2.4379 8.0489 43 1 6.9516 -2.2665 9.1022 44 1 9.0243 -0.2034 8.3481 45 1 8.0293 -0.3167 9.8313 46 1 7.5063 1.2434 7.4292 47 1 6.5317 1.1624 8.9222 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729373477.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:35 Heat of formation + Delta-G solvation = -49.399574 kcal Electronic energy + Delta-G solvation = -22267.829076 eV Core-core repulsion = 19063.852835 eV Total energy + Delta-G solvation = -3203.976241 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.33497 -38.96967 -35.59711 -34.85934 -32.87600 -32.00157 -29.70608 -29.17184 -27.89764 -26.05598 -25.19332 -24.07328 -22.11166 -21.09814 -20.62051 -20.28888 -18.13682 -16.56510 -16.38219 -16.16732 -15.90231 -15.69897 -15.19609 -14.67628 -14.31128 -14.16590 -13.53430 -13.28816 -12.93890 -12.76885 -12.57852 -12.50106 -12.00563 -11.93360 -11.68387 -11.56684 -11.47771 -11.42978 -11.25283 -11.08867 -10.99834 -10.89307 -10.82286 -10.78171 -10.62222 -10.44727 -10.21845 -10.14242 -9.14838 -8.85047 -8.64026 -8.40284 -7.53379 -6.05376 -4.13189 3.27676 3.33890 3.35506 3.47873 3.72921 4.04760 4.36027 4.41335 4.42707 4.66420 4.91046 4.97007 5.00922 5.11767 5.22126 5.25503 5.33783 5.40028 5.46898 5.48050 5.52261 5.53900 5.68972 5.69484 5.74908 5.75615 5.88377 5.91309 5.97339 5.99213 6.10718 6.33038 6.36287 6.49703 6.66393 6.78977 6.83744 6.85356 7.09066 7.48327 7.56115 7.74533 8.04660 8.22969 8.59347 8.86523 9.12844 9.53412 10.99904 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032384 B = 0.002643 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.413938 B =10591.786623 C =10777.963394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.256 3.744 3 H 0.063 0.937 4 C -0.524 4.524 5 H 0.058 0.942 6 C 0.063 3.937 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.275 1.275 11 H -0.285 1.285 12 N -0.596 5.596 13 C 0.088 3.912 14 C 0.501 3.499 15 O -0.556 6.556 16 C -0.137 4.137 17 C -0.101 4.101 18 C -0.118 4.118 19 C 0.046 3.954 20 N -0.520 5.520 21 C 0.032 3.968 22 C -0.125 4.125 23 C -0.132 4.132 24 C 0.033 3.967 25 H 0.011 0.989 26 H 0.093 0.907 27 H 0.030 0.970 28 H 0.263 0.737 29 H 0.047 0.953 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.036 0.964 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.045 0.955 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.065 0.935 45 H 0.070 0.930 46 H 0.044 0.956 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.248 -6.094 19.927 22.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.156 3.844 3 H 0.080 0.920 4 C -0.563 4.563 5 H 0.076 0.924 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.200 1.200 11 H -0.211 1.211 12 N -0.327 5.327 13 C -0.056 4.056 14 C 0.288 3.712 15 O -0.435 6.435 16 C -0.177 4.177 17 C -0.140 4.140 18 C -0.156 4.156 19 C -0.082 4.082 20 N -0.244 5.244 21 C -0.095 4.095 22 C -0.163 4.163 23 C -0.170 4.170 24 C -0.095 4.095 25 H 0.030 0.970 26 H 0.112 0.888 27 H 0.049 0.951 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.055 0.945 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.064 0.936 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.084 0.916 45 H 0.089 0.911 46 H 0.062 0.938 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.831 -5.450 19.978 22.513 hybrid contribution 0.943 -0.412 -1.527 1.841 sum 9.774 -5.862 18.452 21.688 Atomic orbital electron populations 1.22089 0.98324 0.99297 1.00810 1.18921 0.90824 0.94541 0.80131 0.91966 1.21327 1.31668 1.12910 0.90349 0.92367 1.24908 0.94991 0.95025 0.98973 1.69884 1.36402 1.22692 1.23692 0.86496 0.78640 0.79844 0.82397 1.20641 1.19955 1.21123 1.48255 1.49164 1.11636 1.23686 1.21539 1.01483 0.83292 0.99326 1.20485 0.79060 0.87165 0.84509 1.90635 1.58473 1.17326 1.77116 1.21670 1.00677 0.99691 0.95707 1.21273 0.99873 0.98030 0.94814 1.21671 0.99742 0.98147 0.95996 1.22346 0.98464 0.97411 0.89964 1.64829 1.32914 1.04149 1.22486 1.23258 0.96466 0.93207 0.96609 1.22495 0.99178 0.96696 0.97963 1.22400 0.98442 0.95011 1.01131 1.22878 0.92347 0.95882 0.98352 0.97009 0.88841 0.95143 0.92722 0.93442 0.92908 0.91000 0.89663 0.89724 0.91412 0.91211 0.91150 0.92011 0.94547 0.90436 0.89819 0.93643 0.91163 0.90769 0.91620 0.91083 0.93763 0.90415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 8.95 37.16 0.33 -3.24 16 2 C 0.26 6.68 2.64 -69.09 -0.18 6.50 16 3 H 0.06 1.89 6.90 -51.92 -0.36 1.53 16 4 C -0.52 -14.39 8.37 -34.44 -0.29 -14.68 16 5 H 0.06 1.58 7.65 -52.49 -0.40 1.18 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.47 11.32 55.43 0.63 -24.84 16 8 Si 0.90 21.27 29.54 -169.99 -5.02 16.24 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 N -0.60 -12.92 2.75 -175.27 -0.48 -13.41 16 13 C 0.09 1.48 9.48 59.85 0.57 2.05 16 14 C 0.50 10.44 7.67 -10.98 -0.08 10.36 16 15 O -0.56 -13.91 15.31 5.56 0.09 -13.82 16 16 C -0.14 -2.00 4.25 -27.88 -0.12 -2.12 16 17 C -0.10 -1.38 4.50 -26.73 -0.12 -1.50 16 18 C -0.12 -1.26 4.87 -26.73 -0.13 -1.39 16 19 C 0.05 0.48 5.03 -3.82 -0.02 0.47 16 20 N -0.52 -5.18 5.40 -230.44 -1.24 -6.42 16 21 C 0.03 0.28 5.10 -1.90 -0.01 0.27 16 22 C -0.13 -0.90 7.06 -24.87 -0.18 -1.08 16 23 C -0.13 -0.93 6.93 -25.37 -0.18 -1.11 16 24 C 0.03 0.29 6.69 -2.75 -0.02 0.27 16 25 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 27 H 0.03 0.68 6.66 -51.93 -0.35 0.33 16 28 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.69 6.44 -51.93 -0.33 0.36 16 31 H 0.07 1.23 6.43 -51.93 -0.33 0.90 16 32 H 0.09 1.07 7.40 -51.93 -0.38 0.69 16 33 H 0.08 1.11 8.11 -51.93 -0.42 0.69 16 34 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16 35 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.62 6.79 -51.93 -0.35 0.27 16 38 H 0.04 0.39 7.81 -51.93 -0.41 -0.01 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.08 0.71 7.67 -51.93 -0.40 0.31 16 41 H 0.05 0.41 8.00 -51.93 -0.42 -0.01 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.04 0.38 7.57 -51.93 -0.39 -0.01 16 47 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 363.77 15.07 5.48 5.48 Total: -1.00 -31.45 363.77 -9.71 -41.15 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -8.64 Total: -0.84 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -0.52 Total: -3.55 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: -1.10 Total: -44.67 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: 0.09 Total: -13.82 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.45 -9.71 -41.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729373477.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.245 kcal (2) G-P(sol) polarization free energy of solvation -31.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds