Wall clock time and date at job start Tue Mar 31 2020 05:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 5 5 H 1.07999 * 120.00019 * 120.00027 * 4 2 1 6 6 C 1.37879 * 119.99908 * 300.00133 * 4 2 1 7 7 N 1.31516 * 119.99546 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 120.00061 * 359.97438 * 6 4 2 9 9 H 1.48496 * 109.47023 * 90.00536 * 8 6 4 10 10 H 1.48503 * 109.47041 * 210.00292 * 8 6 4 11 11 H 1.48500 * 109.47388 * 329.99951 * 8 6 4 12 12 N 1.46496 * 109.46995 * 239.99855 * 2 1 3 13 13 C 1.46500 * 119.99935 * 299.99945 * 12 2 1 14 14 C 1.34772 * 119.99939 * 120.00347 * 12 2 1 15 15 O 1.21280 * 120.00232 * 0.02562 * 14 12 2 16 16 C 1.50703 * 120.00049 * 179.97438 * 14 12 2 17 17 C 1.52999 * 109.47232 * 180.02562 * 16 14 12 18 18 C 1.53002 * 109.47338 * 180.02562 * 17 16 14 19 19 C 1.53001 * 109.46977 * 180.02562 * 18 17 16 20 20 N 1.46901 * 109.47014 * 179.97438 * 19 18 17 21 21 C 1.48537 * 111.00024 * 52.60093 * 20 19 18 22 22 C 1.54934 * 103.22920 * 159.71883 * 21 20 19 23 23 C 1.54591 * 102.92216 * 322.59346 * 22 21 20 24 24 C 1.47897 * 111.00113 * 169.99880 * 20 19 18 25 25 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 26 26 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 28 28 H 0.97005 * 119.99945 * 180.02562 * 7 6 4 29 29 H 1.08998 * 109.46877 * 90.00284 * 13 12 2 30 30 H 1.09004 * 109.46845 * 210.00304 * 13 12 2 31 31 H 1.08994 * 109.47249 * 330.00535 * 13 12 2 32 32 H 1.09005 * 109.46894 * 299.99577 * 16 14 12 33 33 H 1.08992 * 109.46945 * 59.99855 * 16 14 12 34 34 H 1.09004 * 109.47264 * 300.00221 * 17 16 14 35 35 H 1.09005 * 109.47503 * 59.99876 * 17 16 14 36 36 H 1.09005 * 109.46732 * 299.99511 * 18 17 16 37 37 H 1.08992 * 109.47001 * 59.99724 * 18 17 16 38 38 H 1.08993 * 109.47071 * 299.99772 * 19 18 17 39 39 H 1.09003 * 109.47140 * 60.00373 * 19 18 17 40 40 H 1.08997 * 110.66717 * 278.16217 * 21 20 19 41 41 H 1.09001 * 110.66387 * 41.28711 * 21 20 19 42 42 H 1.08998 * 110.72302 * 204.22957 * 22 21 20 43 43 H 1.09003 * 110.71906 * 80.94900 * 22 21 20 44 44 H 1.09008 * 110.30547 * 263.03793 * 23 22 21 45 45 H 1.08994 * 110.31210 * 140.87188 * 23 22 21 46 46 H 1.09002 * 109.91796 * 333.50979 * 24 20 19 47 47 H 1.09000 * 109.91613 * 94.60789 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 2.1380 -0.8590 3.5565 8 14 0.6258 1.2799 2.6541 9 1 -0.8020 0.8746 2.6993 10 1 0.9772 1.9954 3.9070 11 1 0.8492 2.1774 1.4923 12 7 2.0184 -0.6906 -1.1961 13 6 1.6644 -2.0932 -1.4279 14 6 2.7932 -0.0357 -2.0832 15 8 3.0867 1.1253 -1.8911 16 6 3.2960 -0.7463 -3.3134 17 6 4.1465 0.2152 -4.1460 18 6 4.6565 -0.5061 -5.3953 19 6 5.5075 0.4553 -6.2275 20 7 5.9976 -0.2374 -7.4266 21 6 4.8787 -0.8716 -8.1697 22 6 5.4632 -1.0678 -9.5911 23 6 6.3172 0.2050 -9.7924 24 6 6.6206 0.7149 -8.3714 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.9033 -0.5279 4.4376 29 1 0.7376 -2.1444 -1.9992 30 1 2.4629 -2.5819 -1.9862 31 1 1.5294 -2.5968 -0.4707 32 1 3.9018 -1.6024 -3.0164 33 1 2.4485 -1.0892 -3.9068 34 1 3.5412 1.0717 -4.4430 35 1 4.9941 0.5577 -3.5524 36 1 5.2618 -1.3627 -5.0986 37 1 3.8087 -0.8482 -5.9887 38 1 4.9027 1.3121 -6.5241 39 1 6.3553 0.7970 -5.6337 40 1 4.6171 -1.8318 -7.7253 41 1 4.0123 -0.2108 -8.1980 42 1 4.6658 -1.1186 -10.3324 43 1 6.0867 -1.9610 -9.6318 44 1 5.7549 0.9535 -10.3509 45 1 7.2435 -0.0392 -10.3125 46 1 6.1927 1.7079 -8.2339 47 1 7.6977 0.7490 -8.2080 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729373478.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:37 Heat of formation + Delta-G solvation = -41.445028 kcal Electronic energy + Delta-G solvation = -22320.313268 eV Core-core repulsion = 19116.681961 eV Total energy + Delta-G solvation = -3203.631306 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.41600 -39.09240 -35.76936 -34.95541 -32.83629 -32.05695 -30.46486 -29.25892 -28.09828 -26.16647 -25.13567 -24.16886 -22.20058 -21.14446 -20.70803 -20.33699 -18.21356 -16.95806 -16.38112 -16.23011 -16.02564 -15.69891 -15.46701 -14.80731 -14.45034 -14.11614 -13.56895 -13.32323 -13.04666 -12.87821 -12.73664 -12.56313 -12.21705 -12.07653 -12.01868 -11.79631 -11.70719 -11.56885 -11.45379 -11.28194 -11.10822 -11.06629 -10.92617 -10.82528 -10.70605 -10.49584 -10.13750 -9.63968 -9.33209 -8.96357 -8.66405 -8.63098 -7.70252 -6.14528 -4.14901 3.23480 3.33094 3.37113 3.40246 3.67981 3.90070 4.33579 4.35601 4.39539 4.63638 4.86462 4.93009 4.97408 5.02674 5.18656 5.19678 5.29645 5.35145 5.42314 5.44218 5.48355 5.51267 5.65644 5.66816 5.69259 5.71277 5.85096 5.85958 5.93305 5.95277 5.97596 6.25943 6.27470 6.31258 6.37748 6.43982 6.50922 6.63920 6.81217 6.83857 7.15225 7.39105 7.64340 8.21801 8.49524 8.85228 8.96145 9.46856 10.98187 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.040852 B = 0.002658 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.229499 B =10529.990242 C =10678.596107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.228 3.772 3 H 0.062 0.938 4 C -0.527 4.527 5 H 0.079 0.921 6 C 0.075 3.925 7 N -0.896 5.896 8 Si 0.884 3.116 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.263 1.263 12 N -0.590 5.590 13 C 0.082 3.918 14 C 0.504 3.496 15 O -0.556 6.556 16 C -0.136 4.136 17 C -0.102 4.102 18 C -0.118 4.118 19 C 0.046 3.954 20 N -0.519 5.519 21 C 0.033 3.967 22 C -0.125 4.125 23 C -0.132 4.132 24 C 0.034 3.966 25 H 0.032 0.968 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.266 0.734 29 H 0.043 0.957 30 H 0.057 0.943 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.036 0.964 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.045 0.955 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.065 0.935 45 H 0.071 0.929 46 H 0.044 0.956 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.813 -1.545 -24.534 24.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.126 3.874 3 H 0.079 0.921 4 C -0.565 4.565 5 H 0.097 0.903 6 C -0.128 4.128 7 N -0.533 5.533 8 Si 0.714 3.286 9 H -0.204 1.204 10 H -0.222 1.222 11 H -0.188 1.188 12 N -0.320 5.320 13 C -0.061 4.061 14 C 0.291 3.709 15 O -0.436 6.436 16 C -0.176 4.176 17 C -0.140 4.140 18 C -0.156 4.156 19 C -0.082 4.082 20 N -0.244 5.244 21 C -0.095 4.095 22 C -0.163 4.163 23 C -0.170 4.170 24 C -0.094 4.094 25 H 0.051 0.949 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.054 0.946 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.063 0.937 42 H 0.088 0.912 43 H 0.093 0.907 44 H 0.084 0.916 45 H 0.089 0.911 46 H 0.062 0.938 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.341 -1.325 -24.018 24.443 hybrid contribution -1.268 1.243 0.136 1.781 sum 3.073 -0.082 -23.883 24.079 Atomic orbital electron populations 1.22438 0.99162 1.01024 0.99122 1.19270 0.89920 0.95245 0.83012 0.92065 1.21168 1.32614 1.14215 0.88522 0.90338 1.24875 0.95698 0.96604 0.95640 1.69879 1.45226 1.40242 0.97960 0.86900 0.80379 0.83859 0.77445 1.20430 1.22160 1.18831 1.47891 1.49432 1.11815 1.22908 1.21650 0.98883 0.82872 1.02735 1.20536 0.78782 0.87123 0.84442 1.90632 1.58380 1.17425 1.77116 1.21659 1.00800 0.99834 0.95348 1.21280 0.99918 0.97821 0.95012 1.21670 0.99011 0.98795 0.96105 1.22343 0.98633 0.95467 0.91716 1.64824 1.25901 1.28275 1.05361 1.23255 0.92972 0.99873 0.93418 1.22495 0.99211 0.98296 0.96338 1.22399 1.00439 0.97597 0.96549 1.22879 1.00568 0.94485 0.91514 0.94937 0.92618 0.93258 0.92449 0.93870 0.92382 0.89718 0.89242 0.89694 0.91537 0.91034 0.91017 0.92028 0.94621 0.90383 0.89805 0.93714 0.91170 0.90733 0.91639 0.91055 0.93792 0.90379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.48 8.67 37.16 0.32 -3.16 16 2 C 0.23 5.57 2.23 -69.08 -0.15 5.42 16 3 H 0.06 1.68 5.96 -51.93 -0.31 1.37 16 4 C -0.53 -14.68 8.57 -34.44 -0.30 -14.98 16 5 H 0.08 2.34 7.58 -52.49 -0.40 1.94 16 6 C 0.07 2.14 5.45 -17.82 -0.10 2.05 16 7 N -0.90 -27.10 13.96 55.43 0.77 -26.33 16 8 Si 0.88 22.10 24.37 -169.99 -4.14 17.95 16 9 H -0.28 -6.62 6.87 56.52 0.39 -6.23 16 10 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 11 H -0.26 -6.54 6.53 56.52 0.37 -6.17 16 12 N -0.59 -12.19 2.75 -175.26 -0.48 -12.67 16 13 C 0.08 1.33 9.24 59.85 0.55 1.89 16 14 C 0.50 10.01 7.67 -10.99 -0.08 9.92 16 15 O -0.56 -13.23 15.31 5.56 0.09 -13.15 16 16 C -0.14 -1.89 4.25 -27.88 -0.12 -2.01 16 17 C -0.10 -1.32 4.50 -26.73 -0.12 -1.44 16 18 C -0.12 -1.21 4.87 -26.73 -0.13 -1.34 16 19 C 0.05 0.47 5.03 -3.82 -0.02 0.45 16 20 N -0.52 -5.05 5.40 -230.45 -1.24 -6.29 16 21 C 0.03 0.27 5.10 -1.90 -0.01 0.26 16 22 C -0.13 -0.87 7.06 -24.87 -0.18 -1.04 16 23 C -0.13 -0.90 6.93 -25.38 -0.18 -1.07 16 24 C 0.03 0.28 6.70 -2.76 -0.02 0.26 16 25 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.05 1.13 7.67 -51.93 -0.40 0.73 16 27 H 0.05 1.12 3.27 -51.93 -0.17 0.95 16 28 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.76 6.44 -51.93 -0.33 0.43 16 31 H 0.08 1.52 7.02 -51.93 -0.36 1.16 16 32 H 0.09 1.12 7.40 -51.93 -0.38 0.74 16 33 H 0.08 0.99 8.11 -51.93 -0.42 0.57 16 34 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 35 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.58 6.80 -51.93 -0.35 0.23 16 38 H 0.04 0.37 7.81 -51.93 -0.41 -0.04 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.08 0.68 7.66 -51.93 -0.40 0.28 16 41 H 0.04 0.38 8.00 -51.93 -0.42 -0.04 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 45 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.04 0.37 7.57 -51.93 -0.39 -0.03 16 47 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 357.64 15.07 5.39 5.39 Total: -1.00 -32.54 357.64 -8.72 -41.25 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -8.57 Total: -1.36 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -0.52 Total: -4.80 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: -0.95 Total: -45.29 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.09 Total: -13.15 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.14 Total: 17.95 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.54 -8.72 -41.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729373478.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.190 kcal (2) G-P(sol) polarization free energy of solvation -32.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds