Wall clock time and date at job start Tue Mar 31 2020 05:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47224 * 2 1 4 4 C 1.53008 * 109.47068 * 119.99555 * 2 1 3 5 5 C 1.52997 * 109.46664 * 65.00531 * 4 2 1 6 6 H 1.09002 * 110.85495 * 302.65921 * 5 4 2 7 7 C 1.54627 * 110.97677 * 66.45079 * 5 4 2 8 8 C 1.51288 * 104.19399 * 93.35698 * 7 5 4 9 9 O 1.21276 * 124.93928 * 196.28048 * 8 7 5 10 10 N 1.34416 * 110.11221 * 16.25482 * 8 7 5 11 11 C 1.46509 * 124.34313 * 180.40754 * 10 8 7 12 12 N 1.46898 * 109.46894 * 90.02910 * 11 10 8 13 13 C 1.46901 * 111.00443 * 81.04432 * 12 11 10 14 14 C 1.46906 * 110.99820 * 204.99744 * 12 11 10 15 15 H 1.08997 * 109.47016 * 54.99923 * 14 12 11 16 16 C 1.53000 * 109.47005 * 294.99916 * 14 12 11 17 17 C 1.50696 * 109.47235 * 174.99804 * 14 12 11 18 18 H 1.08005 * 119.99990 * 0.02562 * 17 14 12 19 19 C 1.37881 * 120.00144 * 179.97438 * 17 14 12 20 20 N 1.31509 * 119.99894 * 359.97438 * 19 17 14 21 21 Si 1.86802 * 120.00087 * 180.02562 * 19 17 14 22 22 H 1.48503 * 109.47005 * 60.00040 * 21 19 17 23 23 H 1.48491 * 109.46949 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46859 * 299.99921 * 21 19 17 25 25 C 1.46759 * 111.30572 * 0.67238 * 10 8 7 26 26 H 1.08999 * 109.47329 * 300.00237 * 1 2 3 27 27 H 1.08999 * 109.46920 * 60.00147 * 1 2 3 28 28 H 1.08997 * 109.46950 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47329 * 239.99763 * 2 1 3 30 30 H 1.08995 * 109.47080 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47052 * 299.99771 * 3 2 1 32 32 H 1.08999 * 109.47161 * 59.99660 * 3 2 1 33 33 H 1.08999 * 109.47333 * 305.00460 * 4 2 1 34 34 H 1.08996 * 109.46971 * 184.99846 * 4 2 1 35 35 H 1.09003 * 110.48152 * 334.68433 * 7 5 4 36 36 H 1.08998 * 110.49154 * 212.03749 * 7 5 4 37 37 H 1.08994 * 109.47108 * 330.02801 * 11 10 8 38 38 H 1.08996 * 109.46801 * 210.02205 * 11 10 8 39 39 H 1.09002 * 109.47401 * 183.95136 * 13 12 11 40 40 H 1.09001 * 109.46874 * 63.95149 * 13 12 11 41 41 H 1.09004 * 109.46970 * 303.95282 * 13 12 11 42 42 H 1.08997 * 109.47240 * 299.99870 * 16 14 12 43 43 H 1.08998 * 109.47262 * 60.00073 * 16 14 12 44 44 H 1.09001 * 109.47097 * 179.97438 * 16 14 12 45 45 H 0.97000 * 120.00037 * 179.97438 * 20 19 17 46 46 H 1.09004 * 110.24258 * 101.71895 * 25 10 8 47 47 H 1.08997 * 110.24785 * 223.71511 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.6353 -2.1954 1.1880 6 1 0.5541 -2.2974 1.0942 7 6 2.3620 -2.9213 0.0322 8 6 3.5964 -3.5082 0.6807 9 8 4.5700 -3.9129 0.0814 10 7 3.4572 -3.5153 2.0176 11 6 4.4721 -4.0093 2.9516 12 7 5.3677 -2.9077 3.3290 13 6 4.7664 -2.0772 4.3811 14 6 6.6811 -3.4165 3.7463 15 1 7.0956 -4.0431 2.9566 16 6 6.5254 -4.2430 5.0243 17 6 7.6089 -2.2579 4.0072 18 1 7.2578 -1.2449 3.8766 19 6 8.9056 -2.4911 4.4136 20 7 9.3327 -3.7245 4.5741 21 14 10.0554 -1.0550 4.7377 22 1 9.4902 -0.2014 5.8135 23 1 11.3830 -1.5693 5.1593 24 1 10.2070 -0.2526 3.4974 25 6 2.1556 -2.9706 2.4211 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6053 -0.2617 2.1371 34 1 3.1263 -0.6443 1.2952 35 1 2.6410 -2.2127 -0.7476 36 1 1.7333 -3.7122 -0.3768 37 1 5.0504 -4.8005 2.4747 38 1 3.9843 -4.4027 3.8434 39 1 5.4186 -1.2297 4.5921 40 1 4.6396 -2.6721 5.2855 41 1 3.7950 -1.7135 4.0461 42 1 6.1109 -3.6164 5.8140 43 1 5.8544 -5.0810 4.8356 44 1 7.4999 -4.6209 5.3337 45 1 10.2450 -3.8886 4.8597 46 1 1.4715 -3.7794 2.6779 47 1 2.2756 -2.2942 3.2673 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744434962.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:18 Heat of formation + Delta-G solvation = -38.215980 kcal Electronic energy + Delta-G solvation = -23661.806372 eV Core-core repulsion = 20458.315088 eV Total energy + Delta-G solvation = -3203.491284 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.33703 -37.31606 -36.98039 -35.28345 -32.89728 -31.56419 -28.68930 -27.88425 -27.33822 -26.97937 -25.47209 -25.08688 -23.28727 -21.29615 -19.93684 -19.49391 -18.78151 -16.52760 -16.42912 -15.93812 -15.30024 -15.22239 -14.71409 -14.34159 -14.06555 -13.89325 -13.56114 -13.33269 -13.27749 -12.96869 -12.68506 -12.51092 -12.33345 -12.10395 -11.80286 -11.56252 -11.43799 -11.35566 -11.07945 -11.02535 -10.84075 -10.75020 -10.68096 -10.60485 -10.52372 -10.41747 -10.04834 -9.90453 -9.35703 -8.94374 -8.40143 -8.36160 -7.21128 -5.98912 -4.02689 2.98947 3.34136 3.38523 3.40741 3.44261 4.32623 4.43922 4.48751 4.60628 4.81605 4.90176 5.06629 5.10279 5.17483 5.33248 5.36488 5.48534 5.49190 5.50935 5.56284 5.62962 5.69027 5.74664 5.82961 5.85795 5.88837 5.97912 6.00041 6.13239 6.19364 6.29283 6.30673 6.33659 6.62086 6.75342 6.82570 6.91288 7.10404 7.40934 7.54778 7.72609 7.83362 8.12581 8.36568 8.54852 8.66108 9.01869 9.61926 11.08276 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019014 B = 0.004468 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.268008 B = 6265.585643 C = 6947.500280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.098 4.098 3 C -0.148 4.148 4 C -0.108 4.108 5 C -0.098 4.098 6 H 0.093 0.907 7 C -0.153 4.153 8 C 0.520 3.480 9 O -0.529 6.529 10 N -0.606 5.606 11 C 0.291 3.709 12 N -0.545 5.545 13 C 0.036 3.964 14 C 0.216 3.784 15 H 0.042 0.958 16 C -0.172 4.172 17 C -0.499 4.499 18 H 0.061 0.939 19 C 0.059 3.941 20 N -0.894 5.894 21 Si 0.897 3.103 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.277 1.277 25 C 0.103 3.897 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.046 0.954 39 H 0.073 0.927 40 H 0.019 0.981 41 H 0.040 0.960 42 H 0.031 0.969 43 H 0.005 0.995 44 H 0.090 0.910 45 H 0.261 0.739 46 H 0.066 0.934 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.732 4.487 -4.912 20.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 C -0.206 4.206 4 C -0.145 4.145 5 C -0.117 4.117 6 H 0.111 0.889 7 C -0.193 4.193 8 C 0.307 3.693 9 O -0.405 6.405 10 N -0.341 5.341 11 C 0.080 3.920 12 N -0.270 5.270 13 C -0.113 4.113 14 C 0.110 3.890 15 H 0.060 0.940 16 C -0.232 4.232 17 C -0.538 4.538 18 H 0.079 0.921 19 C -0.142 4.142 20 N -0.533 5.533 21 Si 0.725 3.275 22 H -0.204 1.204 23 H -0.214 1.214 24 H -0.202 1.202 25 C -0.021 4.021 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.118 0.882 36 H 0.115 0.885 37 H 0.105 0.895 38 H 0.064 0.936 39 H 0.092 0.908 40 H 0.037 0.963 41 H 0.059 0.941 42 H 0.050 0.950 43 H 0.024 0.976 44 H 0.109 0.891 45 H 0.071 0.929 46 H 0.084 0.916 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -18.895 4.426 -5.530 20.179 hybrid contribution 0.531 0.270 1.063 1.218 sum -18.364 4.695 -4.467 19.474 Atomic orbital electron populations 1.21887 0.95455 1.01642 1.01493 1.21148 0.95618 0.96263 0.98632 1.21835 1.01429 0.95864 1.01426 1.21658 1.02116 0.92965 0.97811 1.22239 1.00306 0.95194 0.93979 0.88878 1.22477 0.96517 1.01312 0.99032 1.20733 0.87923 0.77958 0.82686 1.90728 1.33992 1.48330 1.67414 1.48469 1.16269 1.62644 1.06748 1.21718 0.87318 0.92273 0.90720 1.62025 1.04387 1.20599 1.40032 1.22302 0.97873 0.98445 0.92638 1.19292 0.83006 0.94519 0.92170 0.94007 1.22446 1.02368 0.97596 1.00746 1.21033 0.95474 0.92641 1.44611 0.92064 1.24914 0.97967 0.95724 0.95614 1.69868 1.17152 1.18753 1.47576 0.86572 0.79816 0.82471 0.78598 1.20408 1.21372 1.20242 1.22225 0.84755 0.97231 0.97882 0.92789 0.93057 0.92502 0.91000 0.92414 0.92952 0.92783 0.91452 0.90871 0.88198 0.88498 0.89511 0.93614 0.90828 0.96310 0.94136 0.94968 0.97564 0.89137 0.92926 0.91614 0.90366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 8.96 37.16 0.33 -0.71 16 2 C -0.10 -0.86 2.82 -90.61 -0.26 -1.11 16 3 C -0.15 -1.32 9.19 37.16 0.34 -0.98 16 4 C -0.11 -1.08 4.15 -26.73 -0.11 -1.19 16 5 C -0.10 -0.93 2.94 -88.89 -0.26 -1.19 16 6 H 0.09 0.66 6.54 -51.93 -0.34 0.32 16 7 C -0.15 -1.77 6.25 -26.74 -0.17 -1.94 16 8 C 0.52 8.98 8.02 -10.86 -0.09 8.90 16 9 O -0.53 -11.84 17.59 5.56 0.10 -11.74 16 10 N -0.61 -9.70 3.13 -175.79 -0.55 -10.25 16 11 C 0.29 5.48 4.76 -63.31 -0.30 5.18 16 12 N -0.55 -11.86 4.84 -240.19 -1.16 -13.03 16 13 C 0.04 0.68 8.74 60.07 0.53 1.21 16 14 C 0.22 5.53 2.28 -68.86 -0.16 5.37 16 15 H 0.04 1.22 7.93 -51.93 -0.41 0.80 16 16 C -0.17 -4.12 8.34 37.16 0.31 -3.81 16 17 C -0.50 -13.82 7.94 -34.44 -0.27 -14.10 16 18 H 0.06 1.70 6.75 -52.48 -0.35 1.35 16 19 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 20 N -0.89 -25.78 11.32 55.43 0.63 -25.15 16 21 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 25 C 0.10 1.16 6.72 -3.03 -0.02 1.14 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.36 6.54 -51.93 -0.34 0.02 16 29 H 0.07 0.66 6.38 -51.93 -0.33 0.33 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.10 1.14 6.23 -51.93 -0.32 0.81 16 36 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.09 1.82 7.50 -51.93 -0.39 1.44 16 38 H 0.05 0.78 7.56 -51.93 -0.39 0.39 16 39 H 0.07 1.53 6.53 -51.93 -0.34 1.19 16 40 H 0.02 0.35 6.27 -51.93 -0.33 0.02 16 41 H 0.04 0.65 5.74 -51.93 -0.30 0.35 16 42 H 0.03 0.73 6.39 -51.93 -0.33 0.40 16 43 H 0.01 0.12 7.13 -51.93 -0.37 -0.25 16 44 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 45 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 46 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.08 0.88 5.80 -51.93 -0.30 0.58 16 LS Contribution 355.10 15.07 5.35 5.35 Total: -1.00 -31.64 355.10 -8.98 -40.62 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -8.10 Total: -0.77 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -0.22 Total: -1.68 kcal Atomic # 7 Polarization: -47.34 SS G_CDS: -1.08 Total: -48.42 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.10 Total: -11.74 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.64 -8.98 -40.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744434962.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.406 kcal (2) G-P(sol) polarization free energy of solvation -31.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds