Wall clock time and date at job start Tue Mar 31 2020 05:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47224 * 2 1 4 4 C 1.53008 * 109.47068 * 119.99555 * 2 1 3 5 5 C 1.52997 * 109.46664 * 65.00531 * 4 2 1 6 6 H 1.09002 * 110.85495 * 302.65921 * 5 4 2 7 7 C 1.54627 * 110.97677 * 66.45079 * 5 4 2 8 8 C 1.51288 * 104.19399 * 93.35698 * 7 5 4 9 9 O 1.21276 * 124.93928 * 196.28048 * 8 7 5 10 10 N 1.34416 * 110.11221 * 16.25482 * 8 7 5 11 11 C 1.46509 * 124.34313 * 180.40754 * 10 8 7 12 12 N 1.46898 * 109.46894 * 90.02910 * 11 10 8 13 13 C 1.46901 * 111.00443 * 81.04432 * 12 11 10 14 14 C 1.46906 * 110.99820 * 204.99744 * 12 11 10 15 15 H 1.08997 * 109.47016 * 54.99923 * 14 12 11 16 16 C 1.53000 * 109.47005 * 294.99916 * 14 12 11 17 17 C 1.50696 * 109.47235 * 174.99804 * 14 12 11 18 18 H 1.08005 * 119.99990 * 0.02562 * 17 14 12 19 19 C 1.37881 * 120.00144 * 179.97438 * 17 14 12 20 20 N 1.31509 * 119.99894 * 359.97438 * 19 17 14 21 21 Si 1.86802 * 120.00087 * 180.02562 * 19 17 14 22 22 H 1.48503 * 109.47005 * 60.00040 * 21 19 17 23 23 H 1.48491 * 109.46949 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46859 * 299.99921 * 21 19 17 25 25 C 1.46759 * 111.30572 * 0.67238 * 10 8 7 26 26 H 1.08999 * 109.47329 * 300.00237 * 1 2 3 27 27 H 1.08999 * 109.46920 * 60.00147 * 1 2 3 28 28 H 1.08997 * 109.46950 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47329 * 239.99763 * 2 1 3 30 30 H 1.08995 * 109.47080 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47052 * 299.99771 * 3 2 1 32 32 H 1.08999 * 109.47161 * 59.99660 * 3 2 1 33 33 H 1.08999 * 109.47333 * 305.00460 * 4 2 1 34 34 H 1.08996 * 109.46971 * 184.99846 * 4 2 1 35 35 H 1.09003 * 110.48152 * 334.68433 * 7 5 4 36 36 H 1.08998 * 110.49154 * 212.03749 * 7 5 4 37 37 H 1.08994 * 109.47108 * 330.02801 * 11 10 8 38 38 H 1.08996 * 109.46801 * 210.02205 * 11 10 8 39 39 H 1.09002 * 109.47401 * 183.95136 * 13 12 11 40 40 H 1.09001 * 109.46874 * 63.95149 * 13 12 11 41 41 H 1.09004 * 109.46970 * 303.95282 * 13 12 11 42 42 H 1.08997 * 109.47240 * 299.99870 * 16 14 12 43 43 H 1.08998 * 109.47262 * 60.00073 * 16 14 12 44 44 H 1.09001 * 109.47097 * 179.97438 * 16 14 12 45 45 H 0.97000 * 120.00037 * 179.97438 * 20 19 17 46 46 H 1.09004 * 110.24258 * 101.71895 * 25 10 8 47 47 H 1.08997 * 110.24785 * 223.71511 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.6353 -2.1954 1.1880 6 1 0.5541 -2.2974 1.0942 7 6 2.3620 -2.9213 0.0322 8 6 3.5964 -3.5082 0.6807 9 8 4.5700 -3.9129 0.0814 10 7 3.4572 -3.5153 2.0176 11 6 4.4721 -4.0093 2.9516 12 7 5.3677 -2.9077 3.3290 13 6 4.7664 -2.0772 4.3811 14 6 6.6811 -3.4165 3.7463 15 1 7.0956 -4.0431 2.9566 16 6 6.5254 -4.2430 5.0243 17 6 7.6089 -2.2579 4.0072 18 1 7.2578 -1.2449 3.8766 19 6 8.9056 -2.4911 4.4136 20 7 9.3327 -3.7245 4.5741 21 14 10.0554 -1.0550 4.7377 22 1 9.4902 -0.2014 5.8135 23 1 11.3830 -1.5693 5.1593 24 1 10.2070 -0.2526 3.4974 25 6 2.1556 -2.9706 2.4211 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6053 -0.2617 2.1371 34 1 3.1263 -0.6443 1.2952 35 1 2.6410 -2.2127 -0.7476 36 1 1.7333 -3.7122 -0.3768 37 1 5.0504 -4.8005 2.4747 38 1 3.9843 -4.4027 3.8434 39 1 5.4186 -1.2297 4.5921 40 1 4.6396 -2.6721 5.2855 41 1 3.7950 -1.7135 4.0461 42 1 6.1109 -3.6164 5.8140 43 1 5.8544 -5.0810 4.8356 44 1 7.4999 -4.6209 5.3337 45 1 10.2450 -3.8886 4.8597 46 1 1.4715 -3.7794 2.6779 47 1 2.2756 -2.2942 3.2673 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744434962.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:17 Heat of formation + Delta-G solvation = -58.774782 kcal Electronic energy + Delta-G solvation = -23662.697869 eV Core-core repulsion = 20458.315088 eV Total energy + Delta-G solvation = -3204.382781 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.52689 -38.85975 -38.23112 -36.44952 -34.76765 -32.87279 -30.49848 -28.96760 -28.34601 -27.87998 -27.28602 -26.45752 -24.95671 -22.13837 -21.50004 -20.65060 -20.04843 -18.32297 -17.65096 -17.45101 -16.79725 -16.63283 -16.09743 -15.49101 -15.31335 -15.20850 -14.92927 -14.66176 -14.52607 -14.19584 -13.91467 -13.88431 -13.38279 -13.16263 -13.00442 -12.88484 -12.81999 -12.66888 -12.66591 -12.48545 -12.33666 -12.30007 -12.06620 -12.00731 -11.83123 -11.40699 -11.33656 -11.20031 -10.99914 -10.71767 -10.52356 -9.73900 -8.92217 -8.13178 -6.24930 1.39542 1.42505 1.49573 1.65486 2.16890 2.41498 3.15644 3.43127 3.48352 3.53354 3.83062 4.03831 4.09747 4.18813 4.29282 4.35629 4.41697 4.49912 4.63567 4.66963 4.69100 4.73327 4.77254 4.83530 4.86429 4.88438 4.98522 5.01109 5.06812 5.09324 5.16365 5.19165 5.23294 5.33487 5.43395 5.49175 5.58198 5.60306 5.66113 5.66233 5.78950 6.12473 6.27800 6.50131 6.65542 6.87408 7.29473 7.44359 8.92845 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019014 B = 0.004468 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.268008 B = 6265.585643 C = 6947.500280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 C -0.150 4.150 4 C -0.106 4.106 5 C -0.083 4.083 6 H 0.136 0.864 7 C -0.141 4.141 8 C 0.502 3.498 9 O -0.597 6.597 10 N -0.607 5.607 11 C 0.296 3.704 12 N -0.562 5.562 13 C 0.044 3.956 14 C 0.223 3.777 15 H -0.009 1.009 16 C -0.155 4.155 17 C -0.516 4.516 18 H 0.055 0.945 19 C 0.011 3.989 20 N -0.921 5.921 21 Si 0.961 3.039 22 H -0.266 1.266 23 H -0.283 1.283 24 H -0.278 1.278 25 C 0.096 3.904 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.036 0.964 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.032 0.968 35 H 0.100 0.900 36 H 0.127 0.873 37 H 0.052 0.948 38 H 0.072 0.928 39 H 0.052 0.948 40 H 0.026 0.974 41 H 0.074 0.926 42 H 0.041 0.959 43 H 0.026 0.974 44 H 0.061 0.939 45 H 0.262 0.738 46 H 0.098 0.902 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.085 5.675 -4.298 24.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.115 4.115 3 C -0.207 4.207 4 C -0.143 4.143 5 C -0.101 4.101 6 H 0.154 0.846 7 C -0.180 4.180 8 C 0.291 3.709 9 O -0.477 6.477 10 N -0.340 5.340 11 C 0.084 3.916 12 N -0.288 5.288 13 C -0.104 4.104 14 C 0.115 3.885 15 H 0.009 0.991 16 C -0.214 4.214 17 C -0.554 4.554 18 H 0.073 0.927 19 C -0.188 4.188 20 N -0.561 5.561 21 Si 0.786 3.214 22 H -0.190 1.190 23 H -0.208 1.208 24 H -0.204 1.204 25 C -0.026 4.026 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.051 0.949 35 H 0.119 0.881 36 H 0.145 0.855 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.071 0.929 40 H 0.044 0.956 41 H 0.092 0.908 42 H 0.060 0.940 43 H 0.045 0.955 44 H 0.080 0.920 45 H 0.071 0.929 46 H 0.116 0.884 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -22.316 5.636 -4.892 23.531 hybrid contribution 1.536 -0.103 0.840 1.754 sum -20.780 5.533 -4.053 21.882 Atomic orbital electron populations 1.21854 0.93443 1.02725 1.02003 1.21128 0.97172 0.95541 0.97662 1.21852 1.00114 0.96611 1.02146 1.21633 0.99640 0.93935 0.99129 1.22306 1.02241 0.93896 0.91676 0.84584 1.22494 0.94069 1.02023 0.99443 1.21857 0.88811 0.76986 0.83208 1.90684 1.37018 1.51226 1.68802 1.48572 1.17222 1.62052 1.06181 1.21505 0.87523 0.90896 0.91709 1.61877 1.03782 1.21935 1.41233 1.22267 0.98676 0.97235 0.92239 1.18972 0.84858 0.93464 0.91193 0.99086 1.22194 1.01283 0.98033 0.99941 1.21301 0.96435 0.92942 1.44744 0.92656 1.25713 0.99457 0.98228 0.95368 1.70009 1.17453 1.20555 1.48050 0.85570 0.77867 0.79395 0.78533 1.19043 1.20819 1.20396 1.22609 0.82649 0.98535 0.98785 0.92246 0.92681 0.91084 0.91628 0.94520 0.92052 0.92267 0.90099 0.94896 0.88130 0.85533 0.92996 0.91034 0.92917 0.95576 0.90763 0.93997 0.95466 0.91985 0.92906 0.88369 0.89906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 8.96 71.98 0.65 -0.80 16 2 C -0.10 -1.45 2.82 -10.79 -0.03 -1.48 16 3 C -0.15 -2.49 9.19 71.98 0.66 -1.83 16 4 C -0.11 -1.84 4.15 30.60 0.13 -1.72 16 5 C -0.08 -1.23 2.94 -9.67 -0.03 -1.26 16 6 H 0.14 1.02 6.54 -2.39 -0.02 1.01 16 7 C -0.14 -2.92 6.25 30.59 0.19 -2.73 16 8 C 0.50 17.41 8.02 87.90 0.70 18.12 16 9 O -0.60 -28.17 17.59 -3.02 -0.05 -28.22 16 10 N -0.61 -18.85 3.13 -828.69 -2.59 -21.44 16 11 C 0.30 11.23 4.76 170.80 0.81 12.04 16 12 N -0.56 -24.96 4.84 -913.83 -4.42 -29.38 16 13 C 0.04 1.61 8.74 127.69 1.12 2.73 16 14 C 0.22 11.85 2.28 44.17 0.10 11.95 16 15 H -0.01 -0.55 7.93 -2.39 -0.02 -0.57 16 16 C -0.16 -7.54 8.34 71.98 0.60 -6.94 16 17 C -0.52 -29.44 7.94 25.60 0.20 -29.24 16 18 H 0.06 3.15 6.75 -2.91 -0.02 3.13 16 19 C 0.01 0.62 5.30 84.66 0.45 1.07 16 20 N -0.92 -54.65 11.32 21.45 0.24 -54.40 16 21 Si 0.96 45.03 29.54 68.60 2.03 47.05 16 22 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 23 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 24 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 25 C 0.10 1.81 6.72 86.90 0.58 2.39 16 26 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.07 0.53 6.54 -2.39 -0.02 0.51 16 29 H 0.07 1.07 6.38 -2.39 -0.02 1.06 16 30 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 33 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.10 2.14 6.23 -2.39 -0.01 2.12 16 36 H 0.13 1.93 8.14 -2.39 -0.02 1.92 16 37 H 0.05 2.31 7.50 -2.39 -0.02 2.30 16 38 H 0.07 2.33 7.56 -2.39 -0.02 2.31 16 39 H 0.05 2.17 6.53 -2.39 -0.02 2.15 16 40 H 0.03 0.92 6.27 -2.39 -0.01 0.91 16 41 H 0.07 2.21 5.74 -2.38 -0.01 2.20 16 42 H 0.04 1.91 6.39 -2.39 -0.02 1.89 16 43 H 0.03 1.15 7.13 -2.39 -0.02 1.14 16 44 H 0.06 3.39 6.07 -2.39 -0.01 3.37 16 45 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 46 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 47 H 0.08 1.53 5.80 -2.39 -0.01 1.51 16 Total: -1.00 -74.20 355.10 2.27 -71.92 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 0.93 Total: 12.16 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: 6.14 Total: 2.32 kcal Atomic # 7 Polarization: -98.46 SS G_CDS: -6.77 Total: -105.23 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -0.05 Total: -28.22 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -74.20 2.27 -71.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744434962.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.150 kcal (2) G-P(sol) polarization free energy of solvation -74.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds