Wall clock time and date at job start Tue Mar 31 2020 05:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.46984 * 2 1 4 4 C 1.52999 * 109.47283 * 119.99317 * 2 1 3 5 5 C 1.53003 * 109.47246 * 65.77464 * 4 2 1 6 6 H 1.09006 * 110.85365 * 309.41511 * 5 4 2 7 7 C 1.54622 * 110.97122 * 185.61869 * 5 4 2 8 8 C 1.51281 * 104.19596 * 266.67672 * 7 5 4 9 9 O 1.21284 * 124.93895 * 163.78107 * 8 7 5 10 10 N 1.34418 * 110.11842 * 343.75010 * 8 7 5 11 11 C 1.46495 * 124.35248 * 179.58348 * 10 8 7 12 12 N 1.46899 * 109.47198 * 89.97384 * 11 10 8 13 13 C 1.46906 * 110.99699 * 84.83858 * 12 11 10 14 14 C 1.46897 * 111.00530 * 208.79317 * 12 11 10 15 15 H 1.08998 * 109.47389 * 188.81798 * 14 12 11 16 16 C 1.53003 * 109.47149 * 308.81676 * 14 12 11 17 17 C 1.50706 * 109.47055 * 68.81160 * 14 12 11 18 18 H 1.08001 * 119.99822 * 0.02562 * 17 14 12 19 19 C 1.37874 * 120.00074 * 180.02562 * 17 14 12 20 20 N 1.31520 * 120.00120 * 0.02562 * 19 17 14 21 21 Si 1.86797 * 119.99868 * 180.02562 * 19 17 14 22 22 H 1.48497 * 109.47540 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46708 * 120.00345 * 21 19 17 24 24 H 1.48495 * 109.47157 * 239.99852 * 21 19 17 25 25 C 1.46861 * 111.30669 * 359.58748 * 10 8 7 26 26 H 1.08994 * 109.47383 * 63.32791 * 1 2 3 27 27 H 1.09004 * 109.46686 * 183.32282 * 1 2 3 28 28 H 1.08997 * 109.47225 * 303.32093 * 1 2 3 29 29 H 1.08994 * 109.47768 * 239.99784 * 2 1 3 30 30 H 1.08998 * 109.47003 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46604 * 299.99256 * 3 2 1 32 32 H 1.08990 * 109.47505 * 59.99206 * 3 2 1 33 33 H 1.09003 * 109.47348 * 305.78025 * 4 2 1 34 34 H 1.08999 * 109.47173 * 185.77248 * 4 2 1 35 35 H 1.08996 * 110.49065 * 25.36212 * 7 5 4 36 36 H 1.09003 * 110.48381 * 148.00043 * 7 5 4 37 37 H 1.08993 * 109.47364 * 209.97743 * 11 10 8 38 38 H 1.09009 * 109.47006 * 329.97929 * 11 10 8 39 39 H 1.08998 * 109.46947 * 60.00481 * 13 12 11 40 40 H 1.08997 * 109.46674 * 179.97438 * 13 12 11 41 41 H 1.08999 * 109.46810 * 300.00079 * 13 12 11 42 42 H 1.09007 * 109.46972 * 66.28821 * 16 14 12 43 43 H 1.08997 * 109.47322 * 186.29115 * 16 14 12 44 44 H 1.09003 * 109.46850 * 306.29754 * 16 14 12 45 45 H 0.96992 * 119.99884 * 180.02562 * 20 19 17 46 46 H 1.09003 * 110.25855 * 258.03687 * 25 10 8 47 47 H 1.09003 * 110.27971 * 136.01500 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6520 -2.1994 1.1791 6 1 0.5903 -2.3119 0.9592 7 6 2.0270 -2.9328 2.4876 8 6 3.4023 -3.5003 2.2138 9 8 4.1686 -3.9044 3.0626 10 7 3.6512 -3.4923 0.8929 11 6 4.8966 -3.9651 0.2835 12 7 4.7769 -5.3956 -0.0285 13 6 4.1315 -5.5977 -1.3326 14 6 6.0881 -6.0563 0.0181 15 1 5.9970 -7.0720 -0.3666 16 6 7.0843 -5.2735 -0.8397 17 6 6.5780 -6.1005 1.4426 18 1 5.9753 -5.6803 2.2342 19 6 7.7955 -6.6775 1.7353 20 7 8.5296 -7.1888 0.7713 21 14 8.4023 -6.7329 3.5011 22 1 7.3979 -6.0957 4.3900 23 1 8.6007 -8.1461 3.9121 24 1 9.6906 -6.0018 3.6049 25 6 2.5143 -2.9484 0.1389 26 1 -0.3634 0.4613 -0.9182 27 1 -0.3633 -1.0260 0.0596 28 1 -0.3633 0.5645 0.8587 29 1 1.8934 -0.5138 -0.8899 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6765 1.9564 0.8898 33 1 1.5946 -0.2704 2.1363 34 1 3.1251 -0.6324 1.3025 35 1 2.0627 -2.2315 3.3213 36 1 1.3173 -3.7344 2.6925 37 1 5.0868 -3.4079 -0.6338 38 1 5.7221 -3.8128 0.9789 39 1 4.7265 -5.1190 -2.1104 40 1 4.0559 -6.6653 -1.5389 41 1 3.1340 -5.1588 -1.3163 42 1 7.2602 -4.2957 -0.3911 43 1 8.0246 -5.8219 -0.8961 44 1 6.6777 -5.1451 -1.8429 45 1 9.3860 -7.5950 0.9772 46 1 1.9408 -3.7569 -0.3146 47 1 2.8651 -2.2578 -0.6279 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744434963.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:20 Heat of formation + Delta-G solvation = -39.966030 kcal Electronic energy + Delta-G solvation = -23710.493273 eV Core-core repulsion = 20506.926101 eV Total energy + Delta-G solvation = -3203.567172 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.22477 -37.35108 -36.91165 -35.13414 -32.80299 -31.65310 -28.78731 -27.88884 -27.38075 -26.89228 -25.32396 -24.98087 -23.24886 -21.28228 -19.97798 -19.60268 -18.63845 -16.59946 -16.40824 -15.79995 -15.26163 -14.96003 -14.69084 -14.30417 -14.08054 -13.74736 -13.57753 -13.46544 -13.33676 -12.84021 -12.51969 -12.42673 -12.19658 -12.02204 -11.87595 -11.72172 -11.56363 -11.50004 -11.26138 -10.90903 -10.78918 -10.77094 -10.69474 -10.63355 -10.44738 -10.35920 -10.08829 -9.82287 -9.17863 -8.86771 -8.37268 -8.18948 -7.23655 -5.91897 -3.93144 3.17207 3.40695 3.48109 3.53541 3.61859 4.34072 4.50302 4.55753 4.59816 4.75670 4.83581 5.03560 5.13612 5.19740 5.32991 5.39602 5.40927 5.44778 5.60020 5.60570 5.64839 5.67767 5.73791 5.76137 5.80748 5.86700 5.92462 5.96831 6.06038 6.10275 6.19271 6.23706 6.39084 6.41366 6.71630 6.79849 6.96759 7.17612 7.35085 7.65927 7.72645 8.01517 8.14012 8.37435 8.62837 8.79377 9.21221 9.72973 11.15887 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022902 B = 0.004413 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.282966 B = 6343.973477 C = 6862.355174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 C -0.148 4.148 4 C -0.107 4.107 5 C -0.102 4.102 6 H 0.094 0.906 7 C -0.152 4.152 8 C 0.517 3.483 9 O -0.517 6.517 10 N -0.607 5.607 11 C 0.299 3.701 12 N -0.548 5.548 13 C 0.028 3.972 14 C 0.215 3.785 15 H 0.041 0.959 16 C -0.169 4.169 17 C -0.497 4.497 18 H 0.074 0.926 19 C 0.058 3.942 20 N -0.900 5.900 21 Si 0.893 3.107 22 H -0.268 1.268 23 H -0.286 1.286 24 H -0.287 1.287 25 C 0.106 3.894 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.041 0.959 38 H 0.106 0.894 39 H 0.017 0.983 40 H 0.059 0.941 41 H 0.047 0.953 42 H 0.030 0.970 43 H 0.087 0.913 44 H 0.007 0.993 45 H 0.258 0.742 46 H 0.065 0.935 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.934 14.459 -4.399 21.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.117 4.117 3 C -0.205 4.205 4 C -0.145 4.145 5 C -0.120 4.120 6 H 0.112 0.888 7 C -0.193 4.193 8 C 0.303 3.697 9 O -0.391 6.391 10 N -0.343 5.343 11 C 0.088 3.912 12 N -0.273 5.273 13 C -0.121 4.121 14 C 0.109 3.891 15 H 0.058 0.942 16 C -0.229 4.229 17 C -0.536 4.536 18 H 0.093 0.907 19 C -0.142 4.142 20 N -0.540 5.540 21 Si 0.721 3.279 22 H -0.192 1.192 23 H -0.212 1.212 24 H -0.213 1.213 25 C -0.017 4.017 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.059 0.941 38 H 0.124 0.876 39 H 0.035 0.965 40 H 0.078 0.922 41 H 0.066 0.934 42 H 0.049 0.951 43 H 0.106 0.894 44 H 0.026 0.974 45 H 0.067 0.933 46 H 0.083 0.917 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.559 13.901 -3.634 21.179 hybrid contribution 0.844 0.163 0.060 0.862 sum -14.715 14.064 -3.575 20.667 Atomic orbital electron populations 1.21901 0.95320 1.01896 1.01502 1.21135 0.95811 0.96126 0.98585 1.21836 1.01132 0.96001 1.01532 1.21677 1.01518 0.93341 0.97925 1.22237 1.00300 0.94825 0.94662 0.88761 1.22437 0.96664 1.01413 0.98737 1.20675 0.88241 0.78073 0.82711 1.90779 1.52440 1.47104 1.48778 1.48524 1.16927 1.61975 1.06868 1.21765 0.84682 0.87979 0.96768 1.61974 1.26412 1.11435 1.27478 1.22347 0.97645 1.01152 0.90955 1.19326 0.80683 0.92798 0.96256 0.94152 1.22446 1.04315 1.00330 0.95774 1.21350 1.02705 1.36917 0.92597 0.90746 1.24901 0.96683 0.95429 0.97218 1.69914 1.12758 1.39982 1.31371 0.86487 0.78535 0.77478 0.85392 1.19229 1.21245 1.21316 1.22131 0.87954 0.96978 0.94672 0.92980 0.92284 0.92800 0.91001 0.92642 0.92869 0.92789 0.91438 0.91454 0.88690 0.88284 0.94125 0.87630 0.96510 0.92213 0.93393 0.95118 0.89421 0.97403 0.93266 0.91691 0.90968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.05 37.16 0.34 -0.63 16 2 C -0.10 -0.74 2.85 -90.62 -0.26 -1.00 16 3 C -0.15 -1.08 9.19 37.16 0.34 -0.74 16 4 C -0.11 -0.94 4.06 -26.73 -0.11 -1.05 16 5 C -0.10 -0.97 3.01 -88.99 -0.27 -1.24 16 6 H 0.09 0.71 6.26 -51.93 -0.33 0.39 16 7 C -0.15 -1.88 6.41 -26.75 -0.17 -2.06 16 8 C 0.52 9.53 8.02 -10.86 -0.09 9.45 16 9 O -0.52 -12.43 17.37 5.55 0.10 -12.33 16 10 N -0.61 -10.26 3.18 -175.83 -0.56 -10.82 16 11 C 0.30 5.95 4.25 -63.32 -0.27 5.68 16 12 N -0.55 -11.96 4.78 -240.19 -1.15 -13.11 16 13 C 0.03 0.50 9.22 60.07 0.55 1.05 16 14 C 0.22 5.51 2.27 -68.86 -0.16 5.35 16 15 H 0.04 1.13 7.96 -51.93 -0.41 0.72 16 16 C -0.17 -4.06 8.20 37.16 0.30 -3.76 16 17 C -0.50 -14.32 7.65 -34.44 -0.26 -14.59 16 18 H 0.07 2.30 7.40 -52.49 -0.39 1.91 16 19 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 20 N -0.90 -26.31 11.39 55.43 0.63 -25.67 16 21 Si 0.89 22.92 29.54 -169.99 -5.02 17.90 16 22 H -0.27 -7.09 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 C 0.11 1.26 6.32 -3.07 -0.02 1.24 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.36 6.31 -51.93 -0.33 0.04 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.56 6.82 -51.93 -0.35 0.21 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 34 H 0.07 0.71 8.11 -51.93 -0.42 0.29 16 35 H 0.09 1.07 7.88 -51.93 -0.41 0.67 16 36 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.04 0.73 7.72 -51.93 -0.40 0.33 16 38 H 0.11 2.49 6.10 -51.92 -0.32 2.18 16 39 H 0.02 0.29 6.69 -51.93 -0.35 -0.06 16 40 H 0.06 1.07 8.03 -51.93 -0.42 0.65 16 41 H 0.05 0.73 6.67 -51.93 -0.35 0.39 16 42 H 0.03 0.71 6.92 -51.93 -0.36 0.35 16 43 H 0.09 2.33 6.26 -51.93 -0.33 2.00 16 44 H 0.01 0.15 6.66 -51.93 -0.35 -0.19 16 45 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 46 H 0.06 0.75 7.17 -51.93 -0.37 0.37 16 47 H 0.07 0.76 6.68 -51.93 -0.35 0.42 16 LS Contribution 358.29 15.07 5.40 5.40 Total: -1.00 -32.57 358.29 -9.07 -41.63 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -8.31 Total: -2.28 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: -0.16 Total: -0.71 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: -1.07 Total: -49.61 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: 0.10 Total: -12.33 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.02 Total: 17.90 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.57 -9.07 -41.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744434963.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.668 kcal (2) G-P(sol) polarization free energy of solvation -32.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds