Wall clock time and date at job start Tue Mar 31 2020 05:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47098 * 2 1 4 4 C 1.53005 * 109.46819 * 119.99771 * 2 1 3 5 5 C 1.52996 * 109.47295 * 65.00506 * 4 2 1 6 6 H 1.09001 * 110.85413 * 302.66203 * 5 4 2 7 7 C 1.54628 * 110.97001 * 66.44997 * 5 4 2 8 8 C 1.51285 * 104.19193 * 93.36119 * 7 5 4 9 9 O 1.21282 * 124.93624 * 196.27224 * 8 7 5 10 10 N 1.34419 * 110.11815 * 16.25094 * 8 7 5 11 11 C 1.46499 * 124.34616 * 180.40818 * 10 8 7 12 12 N 1.46896 * 109.47107 * 90.02530 * 11 10 8 13 13 C 1.46907 * 110.99626 * 81.18088 * 12 11 10 14 14 C 1.46901 * 111.00159 * 205.12986 * 12 11 10 15 15 H 1.08997 * 109.47400 * 189.03888 * 14 12 11 16 16 C 1.52997 * 109.47150 * 309.04645 * 14 12 11 17 17 C 1.50699 * 109.46387 * 69.04273 * 14 12 11 18 18 H 1.07994 * 120.00858 * 0.02562 * 17 14 12 19 19 C 1.37878 * 119.99633 * 179.72444 * 17 14 12 20 20 N 1.31519 * 119.99854 * 0.27612 * 19 17 14 21 21 Si 1.86803 * 120.00081 * 180.27527 * 19 17 14 22 22 H 1.48499 * 109.47145 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47047 * 120.00292 * 21 19 17 24 24 H 1.48501 * 109.47114 * 239.99896 * 21 19 17 25 25 C 1.46757 * 111.29855 * 0.67469 * 10 8 7 26 26 H 1.09002 * 109.46831 * 60.00761 * 1 2 3 27 27 H 1.09003 * 109.47074 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47326 * 300.00001 * 1 2 3 29 29 H 1.08997 * 109.47326 * 239.99999 * 2 1 3 30 30 H 1.08996 * 109.47177 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.46844 * 300.00106 * 3 2 1 32 32 H 1.08997 * 109.47034 * 59.99820 * 3 2 1 33 33 H 1.08996 * 109.47254 * 304.99636 * 4 2 1 34 34 H 1.09006 * 109.46722 * 185.00628 * 4 2 1 35 35 H 1.08999 * 110.48892 * 334.68246 * 7 5 4 36 36 H 1.08998 * 110.48381 * 212.03824 * 7 5 4 37 37 H 1.08999 * 109.47149 * 330.02284 * 11 10 8 38 38 H 1.09000 * 109.46386 * 210.02386 * 11 10 8 39 39 H 1.09009 * 109.46676 * 183.95352 * 13 12 11 40 40 H 1.08996 * 109.47153 * 303.95019 * 13 12 11 41 41 H 1.08990 * 109.47340 * 63.95460 * 13 12 11 42 42 H 1.09004 * 109.47120 * 306.54937 * 16 14 12 43 43 H 1.09000 * 109.47433 * 66.55300 * 16 14 12 44 44 H 1.08998 * 109.47086 * 186.55504 * 16 14 12 45 45 H 0.97003 * 119.99499 * 180.02562 * 20 19 17 46 46 H 1.09000 * 110.25122 * 101.71605 * 25 10 8 47 47 H 1.09000 * 110.24302 * 223.71722 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6353 -2.1954 1.1881 6 1 0.5541 -2.2975 1.0942 7 6 2.3621 -2.9212 0.0322 8 6 3.5965 -3.5081 0.6808 9 8 4.5701 -3.9128 0.0815 10 7 3.4573 -3.5153 2.0177 11 6 4.4721 -4.0092 2.9517 12 7 5.3677 -2.9076 3.3291 13 6 4.7677 -2.0791 4.3834 14 6 6.6822 -3.4161 3.7433 15 1 7.2695 -2.6019 4.1678 16 6 6.4968 -4.5129 4.7939 17 6 7.4011 -3.9833 2.5465 18 1 6.9291 -3.9673 1.5753 19 6 8.6642 -4.5172 2.6903 20 7 9.2393 -4.5363 3.8729 21 14 9.5586 -5.2133 1.2054 22 1 8.7019 -5.0724 0.0006 23 1 10.8280 -4.4707 0.9991 24 1 9.8573 -6.6496 1.4359 25 6 2.1556 -2.9706 2.4211 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6054 -0.2617 2.1370 34 1 3.1263 -0.6442 1.2953 35 1 2.6411 -2.2127 -0.7476 36 1 1.7334 -3.7121 -0.3768 37 1 5.0504 -4.8005 2.4748 38 1 3.9842 -4.4026 3.8435 39 1 5.4198 -1.2314 4.5946 40 1 3.7955 -1.7156 4.0507 41 1 4.6428 -2.6753 5.2872 42 1 5.8768 -4.1358 5.6073 43 1 6.0116 -5.3754 4.3370 44 1 7.4699 -4.8087 5.1859 45 1 10.1281 -4.9116 3.9740 46 1 1.4714 -3.7794 2.6778 47 1 2.2757 -2.2942 3.2673 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744434964.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:23 Heat of formation + Delta-G solvation = -38.646265 kcal Electronic energy + Delta-G solvation = -23863.868964 eV Core-core repulsion = 20660.359021 eV Total energy + Delta-G solvation = -3203.509943 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.24563 -37.29936 -36.88860 -35.19826 -32.76626 -31.55639 -28.82952 -27.89031 -27.33113 -26.85547 -25.33712 -24.99633 -23.23778 -21.25318 -19.96389 -19.50464 -18.66045 -16.56984 -16.27013 -16.03329 -15.25299 -14.89717 -14.63966 -14.34308 -13.95354 -13.79087 -13.55393 -13.41166 -13.16843 -12.91625 -12.63841 -12.48430 -12.21857 -11.95389 -11.81421 -11.66844 -11.52094 -11.43017 -11.15876 -10.92825 -10.78329 -10.69104 -10.65192 -10.56095 -10.44119 -10.35284 -10.08586 -9.82994 -9.19993 -8.88872 -8.38634 -8.19870 -7.22334 -5.93166 -3.94568 3.12900 3.39683 3.47193 3.55248 3.60201 4.36407 4.54259 4.55140 4.64186 4.83276 4.92597 5.09683 5.12557 5.20235 5.38974 5.39833 5.48806 5.51765 5.55141 5.61417 5.68656 5.69547 5.76789 5.84765 5.87990 5.90647 5.96440 6.00506 6.11088 6.14751 6.29903 6.34266 6.39638 6.43787 6.71506 6.79353 6.95501 7.16569 7.34491 7.65691 7.71295 7.99698 8.13572 8.36604 8.61872 8.77729 9.18548 9.71492 11.14593 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020914 B = 0.004644 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.496787 B = 6028.419738 C = 6409.635842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.099 4.099 3 C -0.148 4.148 4 C -0.107 4.107 5 C -0.099 4.099 6 H 0.092 0.908 7 C -0.154 4.154 8 C 0.518 3.482 9 O -0.518 6.518 10 N -0.608 5.608 11 C 0.298 3.702 12 N -0.546 5.546 13 C 0.026 3.974 14 C 0.216 3.784 15 H 0.041 0.959 16 C -0.169 4.169 17 C -0.497 4.497 18 H 0.072 0.928 19 C 0.058 3.942 20 N -0.899 5.899 21 Si 0.893 3.107 22 H -0.269 1.269 23 H -0.286 1.286 24 H -0.287 1.287 25 C 0.103 3.897 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.041 0.959 39 H 0.058 0.942 40 H 0.049 0.951 41 H 0.017 0.983 42 H 0.007 0.993 43 H 0.030 0.970 44 H 0.087 0.913 45 H 0.258 0.742 46 H 0.064 0.936 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.445 7.228 -2.706 20.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 C -0.205 4.205 4 C -0.144 4.144 5 C -0.117 4.117 6 H 0.110 0.890 7 C -0.194 4.194 8 C 0.304 3.696 9 O -0.393 6.393 10 N -0.344 5.344 11 C 0.088 3.912 12 N -0.271 5.271 13 C -0.123 4.123 14 C 0.110 3.890 15 H 0.059 0.941 16 C -0.228 4.228 17 C -0.536 4.536 18 H 0.090 0.910 19 C -0.142 4.142 20 N -0.539 5.539 21 Si 0.721 3.279 22 H -0.193 1.193 23 H -0.212 1.212 24 H -0.213 1.213 25 C -0.021 4.021 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.117 0.883 36 H 0.114 0.886 37 H 0.124 0.876 38 H 0.058 0.942 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.035 0.965 42 H 0.026 0.974 43 H 0.049 0.951 44 H 0.105 0.895 45 H 0.068 0.932 46 H 0.082 0.918 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.607 7.216 -3.304 20.229 hybrid contribution 0.409 -0.793 0.195 0.914 sum -18.198 6.423 -3.109 19.547 Atomic orbital electron populations 1.21887 0.95460 1.01671 1.01447 1.21150 0.95621 0.96219 0.98712 1.21833 1.01383 0.95903 1.01394 1.21645 1.02027 0.93059 0.97713 1.22230 1.00239 0.95114 0.94163 0.88994 1.22484 0.96706 1.01269 0.98954 1.20701 0.87898 0.78259 0.82735 1.90771 1.33650 1.47631 1.67225 1.48496 1.16136 1.62858 1.06890 1.21758 0.86479 0.92435 0.90546 1.62021 1.04696 1.21948 1.38450 1.22394 0.98799 0.97793 0.93332 1.19308 0.83047 0.92855 0.93826 0.94140 1.22435 1.02324 0.99868 0.98212 1.21308 1.00178 1.37198 0.94872 0.90968 1.24902 0.97324 0.96126 0.95849 1.69918 1.15141 1.46821 1.22063 0.86490 0.79483 0.78320 0.83596 1.19291 1.21215 1.21287 1.22192 0.85121 0.97107 0.97665 0.93067 0.92475 0.92826 0.90952 0.92450 0.92952 0.92832 0.91573 0.90935 0.88330 0.88607 0.87606 0.94166 0.92278 0.93220 0.96476 0.97383 0.95085 0.89478 0.93244 0.91751 0.90682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 8.96 37.16 0.33 -0.73 16 2 C -0.10 -0.87 2.82 -90.62 -0.26 -1.12 16 3 C -0.15 -1.30 9.19 37.16 0.34 -0.96 16 4 C -0.11 -1.07 4.15 -26.73 -0.11 -1.18 16 5 C -0.10 -0.97 2.94 -88.89 -0.26 -1.23 16 6 H 0.09 0.68 6.54 -51.93 -0.34 0.34 16 7 C -0.15 -1.89 6.25 -26.74 -0.17 -2.06 16 8 C 0.52 9.46 8.02 -10.86 -0.09 9.38 16 9 O -0.52 -12.36 17.59 5.56 0.10 -12.26 16 10 N -0.61 -10.20 3.13 -175.80 -0.55 -10.75 16 11 C 0.30 5.93 4.22 -63.32 -0.27 5.66 16 12 N -0.55 -11.82 4.78 -240.20 -1.15 -12.96 16 13 C 0.03 0.45 9.24 60.07 0.55 1.01 16 14 C 0.22 5.49 2.27 -68.87 -0.16 5.33 16 15 H 0.04 1.13 8.01 -51.93 -0.42 0.71 16 16 C -0.17 -4.04 8.13 37.16 0.30 -3.74 16 17 C -0.50 -14.24 7.67 -34.44 -0.26 -14.50 16 18 H 0.07 2.22 7.60 -52.49 -0.40 1.82 16 19 C 0.06 1.67 5.31 -17.82 -0.09 1.58 16 20 N -0.90 -26.17 11.40 55.43 0.63 -25.54 16 21 Si 0.89 22.78 29.54 -169.99 -5.02 17.76 16 22 H -0.27 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 C 0.10 1.20 6.72 -3.03 -0.02 1.18 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.38 6.54 -51.93 -0.34 0.04 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.68 6.38 -51.93 -0.33 0.35 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.10 1.19 6.23 -51.93 -0.32 0.86 16 36 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.11 2.50 6.24 -51.93 -0.32 2.17 16 38 H 0.04 0.73 7.67 -51.93 -0.40 0.33 16 39 H 0.06 1.05 8.10 -51.92 -0.42 0.63 16 40 H 0.05 0.75 5.75 -51.93 -0.30 0.45 16 41 H 0.02 0.29 6.63 -51.93 -0.34 -0.05 16 42 H 0.01 0.16 6.59 -51.93 -0.34 -0.19 16 43 H 0.03 0.72 6.99 -51.93 -0.36 0.36 16 44 H 0.09 2.30 6.28 -51.93 -0.33 1.98 16 45 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.07 0.85 5.80 -51.93 -0.30 0.55 16 LS Contribution 356.61 15.07 5.37 5.37 Total: -1.00 -32.31 356.61 -8.98 -41.29 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -8.21 Total: -1.52 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -0.15 Total: -1.37 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: -1.07 Total: -49.26 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: 0.10 Total: -12.26 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.31 -8.98 -41.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744434964.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.640 kcal (2) G-P(sol) polarization free energy of solvation -32.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds