Wall clock time and date at job start Tue Mar 31 2020 05:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47425 * 2 1 4 4 C 1.53006 * 109.47084 * 239.99653 * 2 1 3 5 5 C 1.53008 * 109.46888 * 62.21232 * 4 2 1 6 6 H 1.08992 * 111.02030 * 301.82506 * 5 4 2 7 7 C 1.55556 * 111.22493 * 177.51219 * 5 4 2 8 8 C 1.54379 * 102.27919 * 207.98788 * 7 5 4 9 9 O 1.43242 * 107.58560 * 21.35694 * 8 7 5 10 10 C 1.43640 * 109.97307 * 1.71350 * 9 8 7 11 11 N 1.46896 * 109.47172 * 119.99951 * 2 1 3 12 12 C 1.46894 * 111.00006 * 275.93680 * 11 2 1 13 13 C 1.53040 * 109.46149 * 275.06507 * 12 11 2 14 14 C 1.53188 * 109.31616 * 178.61639 * 13 12 11 15 15 N 1.46919 * 108.77732 * 54.63342 * 14 13 12 16 16 C 1.36940 * 120.63366 * 126.37160 * 15 14 13 17 17 H 1.07995 * 120.00207 * 209.24593 * 16 15 14 18 18 C 1.38817 * 119.99561 * 29.23851 * 16 15 14 19 19 N 1.31617 * 119.99971 * 24.49446 * 18 16 15 20 20 Si 1.86803 * 119.99743 * 204.49645 * 18 16 15 21 21 H 1.48499 * 109.47145 * 94.95671 * 20 18 16 22 22 H 1.48499 * 109.46864 * 214.95207 * 20 18 16 23 23 H 1.48488 * 109.47355 * 334.95426 * 20 18 16 24 24 C 1.46925 * 118.74154 * 306.39625 * 15 14 13 25 25 C 1.53047 * 109.46220 * 154.99976 * 12 11 2 26 26 H 1.08993 * 109.46928 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47024 * 300.00147 * 1 2 3 28 28 H 1.08995 * 109.46711 * 59.99854 * 1 2 3 29 29 H 1.09000 * 109.46942 * 302.21785 * 4 2 1 30 30 H 1.08999 * 109.47317 * 182.20989 * 4 2 1 31 31 H 1.09001 * 110.83557 * 89.78797 * 7 5 4 32 32 H 1.09000 * 110.83975 * 326.18573 * 7 5 4 33 33 H 1.09001 * 109.82783 * 261.84545 * 8 7 5 34 34 H 1.08997 * 109.91041 * 140.91649 * 8 7 5 35 35 H 1.08996 * 110.30891 * 94.48278 * 10 9 8 36 36 H 1.09001 * 110.31040 * 216.55726 * 10 9 8 37 37 H 1.00898 * 111.00332 * 151.98065 * 11 2 1 38 38 H 1.08998 * 109.46221 * 35.02498 * 12 11 2 39 39 H 1.09002 * 109.49899 * 298.56735 * 13 12 11 40 40 H 1.09003 * 109.49639 * 58.65918 * 13 12 11 41 41 H 1.09009 * 109.58341 * 294.84736 * 14 13 12 42 42 H 1.09002 * 109.59095 * 174.42609 * 14 13 12 43 43 H 0.97006 * 119.99712 * 179.97438 * 19 18 16 44 44 H 1.09003 * 109.58800 * 293.81947 * 24 15 14 45 45 H 1.08998 * 109.58703 * 173.39290 * 24 15 14 46 46 H 1.09001 * 109.49604 * 301.33524 * 25 12 11 47 47 H 1.08998 * 109.49398 * 61.39785 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2493 5 6 1.5760 0.0313 -2.4979 6 1 0.4892 0.1088 -2.5264 7 6 2.1252 -0.6333 -3.7927 8 6 2.2007 0.5610 -4.7681 9 8 2.2411 1.7587 -3.9835 10 6 2.2379 1.4296 -2.5853 11 7 2.0197 -0.6925 1.1994 12 6 2.0615 0.2170 2.3522 13 6 3.3797 0.9943 2.3409 14 6 3.4049 1.9664 3.5246 15 7 3.1598 1.2120 4.7613 16 6 4.0280 1.3010 5.8166 17 1 4.1450 0.4661 6.4915 18 6 4.7579 2.4644 6.0186 19 7 4.3122 3.6107 5.5498 20 14 6.3727 2.4030 6.9557 21 1 7.4985 2.2839 5.9946 22 1 6.5308 3.6468 7.7514 23 1 6.3726 1.2297 7.8658 24 6 1.9658 0.3599 4.8442 25 6 1.9568 -0.5942 3.6457 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8899 29 1 1.6446 -1.7369 -1.2693 30 1 3.1293 -0.7558 -1.2297 31 1 1.4352 -1.3923 -4.1615 32 1 3.1146 -1.0573 -3.6213 33 1 1.3206 0.5695 -5.4110 34 1 3.1021 0.4869 -5.3765 35 1 3.2581 1.3897 -2.2038 36 1 1.6538 2.1604 -2.0259 37 1 2.9242 -1.1076 1.0334 38 1 1.2274 0.9162 2.2935 39 1 4.2137 0.2975 2.4246 40 1 3.4644 1.5535 1.4090 41 1 2.6273 2.7194 3.3957 42 1 4.3799 2.4507 3.5791 43 1 4.8221 4.4237 5.6913 44 1 1.0709 0.9818 4.8229 45 1 1.9913 -0.2158 5.7694 46 1 1.0286 -1.1656 3.6427 47 1 2.8038 -1.2764 3.7168 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000765854773.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:17 Heat of formation + Delta-G solvation = -42.613367 kcal Electronic energy + Delta-G solvation = -23190.327518 eV Core-core repulsion = 19986.645549 eV Total energy + Delta-G solvation = -3203.681969 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.85082 -38.33758 -36.27979 -33.83566 -32.21346 -30.81952 -29.87253 -29.41050 -28.11243 -26.41945 -24.52968 -22.87685 -22.13895 -21.80155 -20.91238 -19.96470 -19.10391 -17.07978 -16.76628 -16.24568 -15.31064 -15.20888 -14.98093 -14.56465 -14.18328 -13.76415 -13.69709 -13.55506 -13.19806 -13.03656 -12.73675 -12.65290 -12.38655 -11.97359 -11.80522 -11.60109 -11.52090 -11.34135 -11.24630 -10.95154 -10.78630 -10.73927 -10.71381 -10.40860 -10.39893 -10.15258 -10.00331 -9.74245 -9.66819 -9.48650 -8.45060 -8.04614 -6.66973 -5.80651 -3.18934 3.38174 3.46251 3.47680 3.63441 4.14214 4.25098 4.51547 4.53549 4.67165 4.83225 4.95051 5.05954 5.12630 5.23363 5.31833 5.39992 5.43370 5.44701 5.48655 5.58155 5.58724 5.63030 5.68962 5.78243 5.80410 5.83990 5.93101 6.02109 6.08770 6.16330 6.32516 6.33956 6.51563 6.56228 6.61227 6.68607 6.76562 6.85613 7.02733 7.26887 7.40244 7.51103 7.67980 7.83703 8.45147 9.20483 9.85821 10.44665 11.27721 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024534 B = 0.003481 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.003223 B = 8041.693489 C = 8683.166673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.081 3.919 3 H 0.045 0.955 4 C -0.107 4.107 5 C -0.120 4.120 6 H 0.091 0.909 7 C -0.152 4.152 8 C 0.050 3.950 9 O -0.387 6.387 10 C 0.053 3.947 11 N -0.685 5.685 12 C 0.096 3.904 13 C -0.166 4.166 14 C 0.178 3.822 15 N -0.591 5.591 16 C -0.258 4.258 17 H 0.065 0.935 18 C 0.007 3.993 19 N -0.894 5.894 20 Si 0.895 3.105 21 H -0.288 1.288 22 H -0.292 1.292 23 H -0.278 1.278 24 C 0.145 3.855 25 C -0.117 4.117 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.336 0.664 38 H 0.069 0.931 39 H 0.056 0.944 40 H 0.043 0.957 41 H 0.018 0.982 42 H 0.074 0.926 43 H 0.253 0.747 44 H 0.016 0.984 45 H 0.054 0.946 46 H 0.055 0.945 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.021 -8.733 -17.778 20.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.029 4.029 3 H 0.063 0.937 4 C -0.145 4.145 5 C -0.140 4.140 6 H 0.110 0.890 7 C -0.190 4.190 8 C -0.026 4.026 9 O -0.306 6.306 10 C -0.023 4.023 11 N -0.315 5.315 12 C -0.013 4.013 13 C -0.207 4.207 14 C 0.051 3.949 15 N -0.314 5.314 16 C -0.388 4.388 17 H 0.082 0.918 18 C -0.193 4.193 19 N -0.537 5.537 20 Si 0.724 3.276 21 H -0.215 1.215 22 H -0.219 1.219 23 H -0.203 1.203 24 C 0.018 3.982 25 C -0.156 4.156 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.104 0.896 37 H 0.154 0.846 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.036 0.964 42 H 0.092 0.908 43 H 0.063 0.937 44 H 0.034 0.966 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.577 -8.623 -17.662 20.725 hybrid contribution 1.696 0.443 0.279 1.775 sum -4.880 -8.180 -17.383 19.821 Atomic orbital electron populations 1.21846 0.94854 1.02031 1.01076 1.21498 0.95875 0.96293 0.89243 0.93729 1.21659 1.00583 0.99752 0.92522 1.22961 1.01354 0.95032 0.94605 0.89040 1.23228 1.02362 0.98276 0.95134 1.23097 1.01330 0.84103 0.94104 1.88407 1.95699 1.29509 1.17002 1.23511 1.00359 0.96036 0.82389 1.60776 1.32405 1.34371 1.03933 1.21519 0.97098 0.92802 0.89920 1.22835 0.97555 1.00416 0.99896 1.20575 1.00706 0.90753 0.82835 1.44053 1.23117 1.52089 1.12093 1.19144 1.16378 0.96928 1.06319 0.91751 1.25007 1.00423 0.94661 0.99211 1.70144 1.36761 0.97335 1.49456 0.86391 0.84729 0.77076 0.79364 1.21505 1.21858 1.20281 1.20931 0.89845 0.92148 0.95290 1.21973 1.00656 0.98305 0.94712 0.92231 0.92636 0.92894 0.90666 0.91782 0.90033 0.90428 0.91476 0.91641 0.92022 0.89569 0.84586 0.91313 0.92557 0.93817 0.96422 0.90807 0.93707 0.96647 0.92705 0.92662 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.11 37.16 0.34 -1.20 16 2 C 0.08 0.93 2.42 -67.71 -0.16 0.77 16 3 H 0.04 0.57 6.32 -51.93 -0.33 0.24 16 4 C -0.11 -0.99 4.27 -26.72 -0.11 -1.11 16 5 C -0.12 -1.04 2.83 -88.22 -0.25 -1.29 16 6 H 0.09 0.78 6.50 -51.93 -0.34 0.44 16 7 C -0.15 -1.14 6.51 -24.65 -0.16 -1.30 16 8 C 0.05 0.43 7.80 37.88 0.30 0.73 16 9 O -0.39 -4.56 11.36 -35.23 -0.40 -4.96 16 10 C 0.05 0.55 6.40 38.19 0.24 0.80 16 11 N -0.68 -9.25 6.05 -99.70 -0.60 -9.85 16 12 C 0.10 1.59 2.24 -67.67 -0.15 1.43 16 13 C -0.17 -3.10 5.31 -26.61 -0.14 -3.24 16 14 C 0.18 4.23 5.36 -3.72 -0.02 4.21 16 15 N -0.59 -14.88 2.98 -172.32 -0.51 -15.39 16 16 C -0.26 -7.16 9.51 -15.06 -0.14 -7.31 16 17 H 0.06 1.77 7.94 -52.49 -0.42 1.35 16 18 C 0.01 0.19 4.69 -17.43 -0.08 0.10 16 19 N -0.89 -26.24 11.80 55.49 0.66 -25.58 16 20 Si 0.89 21.76 29.62 -169.99 -5.03 16.73 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 C 0.14 3.08 6.52 -3.71 -0.02 3.05 16 25 C -0.12 -2.06 5.69 -26.61 -0.15 -2.21 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.68 7.36 -51.93 -0.38 0.30 16 28 H 0.05 0.50 6.47 -51.93 -0.34 0.16 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.60 8.05 -51.93 -0.42 0.18 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.56 8.04 -51.93 -0.42 0.14 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.66 8.00 -51.93 -0.42 0.24 16 36 H 0.09 0.90 8.04 -51.93 -0.42 0.48 16 37 H 0.34 4.40 8.08 -39.29 -0.32 4.08 16 38 H 0.07 1.20 7.04 -51.93 -0.37 0.84 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.04 0.75 7.40 -51.93 -0.38 0.36 16 41 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 42 H 0.07 1.96 6.40 -51.93 -0.33 1.63 16 43 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.05 1.15 7.93 -51.93 -0.41 0.74 16 46 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 355.08 15.07 5.35 5.35 Total: -1.00 -29.73 355.08 -9.71 -39.44 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -8.64 Total: 0.84 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: -0.52 Total: -6.57 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: -0.46 Total: -50.83 kcal Atomic # 8 Polarization: -4.56 SS G_CDS: -0.40 Total: -4.96 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.73 -9.71 -39.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765854773.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.171 kcal (2) G-P(sol) polarization free energy of solvation -29.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds