Wall clock time and date at job start Tue Mar 31 2020 05:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47163 * 2 1 4 4 C 1.53001 * 109.47114 * 119.99796 * 2 1 3 5 5 C 1.52994 * 109.47376 * 185.00347 * 4 2 1 6 6 H 1.08995 * 110.75665 * 57.01470 * 5 4 2 7 7 C 1.55308 * 110.84973 * 180.71612 * 5 4 2 8 8 C 1.54947 * 100.94408 * 152.32126 * 7 5 4 9 9 O 1.43647 * 105.13359 * 323.55093 * 8 7 5 10 10 C 1.43238 * 109.97251 * 24.42973 * 9 8 7 11 11 N 1.46898 * 109.47298 * 239.99774 * 2 1 3 12 12 C 1.46899 * 111.00414 * 99.18724 * 11 2 1 13 13 C 1.53043 * 109.45973 * 273.88644 * 12 11 2 14 14 C 1.53183 * 109.31124 * 178.61360 * 13 12 11 15 15 N 1.46928 * 108.77953 * 54.63268 * 14 13 12 16 16 C 1.36932 * 120.63181 * 126.41507 * 15 14 13 17 17 H 1.08003 * 119.99626 * 211.37533 * 16 15 14 18 18 C 1.38808 * 120.00331 * 31.37088 * 16 15 14 19 19 N 1.31616 * 119.99810 * 10.93277 * 18 16 15 20 20 Si 1.86799 * 120.00267 * 190.93101 * 18 16 15 21 21 H 1.48498 * 109.47036 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47188 * 119.99893 * 20 18 16 23 23 H 1.48496 * 109.47208 * 240.00239 * 20 18 16 24 24 C 1.46926 * 118.73552 * 306.38979 * 15 14 13 25 25 C 1.53034 * 109.45912 * 153.81323 * 12 11 2 26 26 H 1.09004 * 109.47135 * 294.44981 * 1 2 3 27 27 H 1.09000 * 109.47061 * 54.44635 * 1 2 3 28 28 H 1.09000 * 109.47220 * 174.44682 * 1 2 3 29 29 H 1.09008 * 109.46846 * 304.99951 * 4 2 1 30 30 H 1.09001 * 109.47401 * 64.99645 * 4 2 1 31 31 H 1.09003 * 111.11894 * 270.23751 * 7 5 4 32 32 H 1.08998 * 111.12727 * 34.39717 * 7 5 4 33 33 H 1.08996 * 110.31071 * 204.64152 * 8 7 5 34 34 H 1.08995 * 110.31214 * 82.46396 * 8 7 5 35 35 H 1.08998 * 109.83191 * 238.77481 * 10 9 8 36 36 H 1.08999 * 109.82813 * 117.79974 * 10 9 8 37 37 H 1.00902 * 110.99675 * 335.23166 * 11 2 1 38 38 H 1.09003 * 109.45658 * 33.83635 * 12 11 2 39 39 H 1.09001 * 109.49346 * 298.56226 * 13 12 11 40 40 H 1.08998 * 109.49702 * 58.65907 * 13 12 11 41 41 H 1.09002 * 109.58602 * 294.84030 * 14 13 12 42 42 H 1.09004 * 109.58938 * 174.41989 * 14 13 12 43 43 H 0.97000 * 120.00091 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.58694 * 293.82145 * 24 15 14 45 45 H 1.09003 * 109.58801 * 173.39290 * 24 15 14 46 46 H 1.08994 * 109.49993 * 301.33326 * 25 12 11 47 47 H 1.08996 * 109.50028 * 61.40616 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5647 -0.6132 1.3138 6 1 3.8788 0.4305 1.3052 7 6 4.1188 -1.3514 2.5629 8 6 5.5355 -1.7403 2.0704 9 8 5.3742 -2.0607 0.6794 10 6 4.2203 -1.3939 0.1544 11 7 2.0197 -0.6925 -1.1994 12 6 2.4016 0.2681 -2.2430 13 6 1.1691 0.6377 -3.0716 14 6 1.5642 1.6655 -4.1365 15 7 2.6809 1.1254 -4.9239 16 6 2.6049 1.0614 -6.2896 17 1 3.1133 0.2712 -6.8222 18 6 1.8745 2.0118 -6.9895 19 7 1.4362 3.0894 -6.3738 20 14 1.5135 1.7616 -8.8051 21 1 2.1119 0.4797 -9.2566 22 1 0.0442 1.7232 -9.0170 23 1 2.0970 2.8826 -9.5849 24 6 3.8809 0.6560 -4.2180 25 6 3.4599 -0.3607 -3.1521 26 1 -0.3633 0.4254 0.9355 27 1 -0.3633 0.5976 -0.8361 28 1 -0.3634 -1.0228 -0.0994 29 1 1.6053 -0.2616 2.1370 30 1 1.7516 -1.7715 1.2057 31 1 4.1714 -0.6834 3.4226 32 1 3.5255 -2.2368 2.7913 33 1 5.9015 -2.6084 2.6185 34 1 6.2207 -0.9009 2.1882 35 1 3.5177 -2.1271 -0.2416 36 1 4.5193 -0.7031 -0.6340 37 1 1.3338 -1.3473 -1.5442 38 1 2.8090 1.1661 -1.7784 39 1 0.7756 -0.2557 -3.5565 40 1 0.4068 1.0640 -2.4195 41 1 1.8725 2.5925 -3.6530 42 1 0.7145 1.8579 -4.7917 43 1 0.9254 3.7534 -6.8628 44 1 4.3783 1.5006 -3.7412 45 1 4.5600 0.1821 -4.9269 46 1 4.3280 -0.6448 -2.5575 47 1 3.0451 -1.2449 -3.6359 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000765854797.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:19 Heat of formation + Delta-G solvation = -37.000001 kcal Electronic energy + Delta-G solvation = -23765.448690 eV Core-core repulsion = 20562.010135 eV Total energy + Delta-G solvation = -3203.438556 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.61347 -38.23660 -36.17694 -33.56888 -32.21376 -30.68919 -29.89745 -29.30039 -28.11489 -25.90641 -24.53282 -22.56687 -21.99798 -21.50005 -20.95123 -20.38544 -18.95496 -16.84079 -16.69419 -15.91137 -15.32114 -14.93659 -14.60614 -14.58008 -13.89998 -13.63413 -13.43876 -13.32338 -13.15691 -12.87540 -12.77069 -12.56695 -12.37904 -12.19280 -11.78182 -11.45704 -11.31789 -11.04016 -10.89437 -10.81023 -10.71207 -10.68177 -10.67777 -10.53418 -10.31171 -10.09138 -9.99089 -9.64082 -9.40934 -9.25898 -8.49352 -7.98091 -6.58235 -5.76318 -3.23671 3.37215 3.44929 3.47318 4.03341 4.36247 4.44355 4.50639 4.61531 4.96624 5.03603 5.14373 5.26521 5.35170 5.37207 5.39709 5.48002 5.51648 5.56831 5.60940 5.69961 5.71838 5.75883 5.85165 5.89670 5.96926 5.99580 6.10799 6.14446 6.20366 6.29150 6.40067 6.49538 6.55979 6.61151 6.68444 6.75635 6.88696 7.06200 7.20103 7.38011 7.43032 7.64551 7.72294 7.81642 8.50516 9.25265 9.87273 10.45620 11.31637 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028444 B = 0.003929 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.138745 B = 7124.851061 C = 7804.927996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.081 3.919 3 H 0.072 0.928 4 C -0.094 4.094 5 C -0.112 4.112 6 H 0.075 0.925 7 C -0.155 4.155 8 C 0.052 3.948 9 O -0.397 6.397 10 C 0.070 3.930 11 N -0.682 5.682 12 C 0.097 3.903 13 C -0.168 4.168 14 C 0.176 3.824 15 N -0.593 5.593 16 C -0.249 4.249 17 H 0.064 0.936 18 C 0.002 3.998 19 N -0.906 5.906 20 Si 0.903 3.097 21 H -0.277 1.277 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.144 3.856 25 C -0.120 4.120 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.054 0.946 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.339 0.661 38 H 0.066 0.934 39 H 0.054 0.946 40 H 0.046 0.954 41 H 0.014 0.986 42 H 0.086 0.914 43 H 0.252 0.748 44 H 0.015 0.985 45 H 0.053 0.947 46 H 0.057 0.943 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.874 -7.371 17.946 19.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.030 4.030 3 H 0.090 0.910 4 C -0.132 4.132 5 C -0.131 4.131 6 H 0.094 0.906 7 C -0.193 4.193 8 C -0.025 4.025 9 O -0.317 6.317 10 C -0.006 4.006 11 N -0.312 5.312 12 C -0.012 4.012 13 C -0.209 4.209 14 C 0.049 3.951 15 N -0.315 5.315 16 C -0.379 4.379 17 H 0.082 0.918 18 C -0.196 4.196 19 N -0.551 5.551 20 Si 0.733 3.267 21 H -0.202 1.202 22 H -0.217 1.217 23 H -0.217 1.217 24 C 0.017 3.983 25 C -0.159 4.159 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.157 0.843 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.033 0.967 42 H 0.104 0.896 43 H 0.062 0.938 44 H 0.033 0.967 45 H 0.072 0.928 46 H 0.076 0.924 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.572 -7.440 17.980 19.522 hybrid contribution -1.380 0.568 -1.063 1.832 sum 0.192 -6.873 16.916 18.260 Atomic orbital electron populations 1.22541 0.96919 1.02056 1.02251 1.21625 0.92730 0.97574 0.91038 0.91017 1.21568 0.93734 1.01085 0.96829 1.22605 0.96218 0.99860 0.94383 0.90630 1.23339 0.96750 1.00842 0.98343 1.23255 0.96238 0.99851 0.83171 1.88409 1.48474 1.71540 1.23302 1.23429 0.85956 0.96312 0.94906 1.60893 1.45536 1.18455 1.06317 1.21597 0.95643 0.93436 0.90558 1.22946 0.96862 1.01728 0.99332 1.20689 0.92508 0.90965 0.90910 1.44027 1.11747 1.73324 1.02448 1.19242 1.30116 1.06635 0.81945 0.91808 1.25155 1.01727 0.94894 0.97806 1.69989 1.40383 1.09338 1.35408 0.86206 0.77691 0.77551 0.85252 1.20217 1.21661 1.21665 1.20941 0.89984 0.94204 0.93128 1.22046 0.97502 0.99408 0.96965 0.92593 0.91933 0.92523 0.92046 0.91630 0.90595 0.90621 0.90532 0.92806 0.89446 0.90939 0.84288 0.91576 0.92720 0.93553 0.96744 0.89630 0.93757 0.96714 0.92799 0.92442 0.92545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.85 9.02 37.16 0.34 -1.52 16 2 C 0.08 0.89 2.60 -67.72 -0.18 0.72 16 3 H 0.07 0.88 7.20 -51.93 -0.37 0.51 16 4 C -0.09 -0.91 4.44 -26.73 -0.12 -1.02 16 5 C -0.11 -1.18 3.03 -88.67 -0.27 -1.45 16 6 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 7 C -0.16 -1.40 6.62 -24.48 -0.16 -1.56 16 8 C 0.05 0.54 7.78 38.19 0.30 0.84 16 9 O -0.40 -5.60 11.36 -35.23 -0.40 -6.00 16 10 C 0.07 0.90 5.82 37.88 0.22 1.12 16 11 N -0.68 -8.64 3.14 -99.70 -0.31 -8.95 16 12 C 0.10 1.54 2.17 -67.67 -0.15 1.40 16 13 C -0.17 -3.08 5.24 -26.61 -0.14 -3.22 16 14 C 0.18 4.17 5.25 -3.71 -0.02 4.15 16 15 N -0.59 -14.89 2.99 -172.32 -0.51 -15.41 16 16 C -0.25 -6.91 9.58 -15.06 -0.14 -7.05 16 17 H 0.06 1.75 7.85 -52.48 -0.41 1.34 16 18 C 0.00 0.07 5.04 -17.43 -0.09 -0.02 16 19 N -0.91 -26.41 11.07 55.49 0.61 -25.80 16 20 Si 0.90 21.83 29.57 -169.99 -5.03 16.80 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 C 0.14 3.07 6.52 -3.71 -0.02 3.04 16 25 C -0.12 -2.09 5.65 -26.61 -0.15 -2.24 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.74 6.02 -51.93 -0.31 0.43 16 28 H 0.06 0.55 8.02 -51.93 -0.42 0.14 16 29 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 30 H 0.06 0.64 8.07 -51.93 -0.42 0.22 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.66 8.04 -51.93 -0.42 0.24 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.09 1.18 6.71 -51.93 -0.35 0.83 16 36 H 0.07 1.05 5.97 -51.93 -0.31 0.74 16 37 H 0.34 4.28 7.92 -39.29 -0.31 3.97 16 38 H 0.07 1.12 7.32 -51.93 -0.38 0.74 16 39 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.05 0.78 5.90 -51.93 -0.31 0.47 16 41 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.09 2.30 6.11 -51.93 -0.32 1.98 16 43 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 44 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 46 H 0.06 0.93 6.41 -51.93 -0.33 0.60 16 47 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 347.40 15.07 5.24 5.24 Total: -1.00 -29.07 347.40 -9.42 -38.49 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -8.43 Total: 2.43 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -0.59 Total: -6.81 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: -0.21 Total: -50.16 kcal Atomic # 8 Polarization: -5.60 SS G_CDS: -0.40 Total: -6.00 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.07 -9.42 -38.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765854797.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.493 kcal (2) G-P(sol) polarization free energy of solvation -29.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds