Wall clock time and date at job start Tue Mar 31 2020 05:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.46997 * 2 1 4 4 C 1.52992 * 109.47224 * 119.99917 * 2 1 3 5 5 C 1.52997 * 109.47482 * 300.00294 * 4 2 1 6 6 C 1.53000 * 109.47060 * 180.02562 * 5 4 2 7 7 C 1.53002 * 109.47233 * 299.99657 * 6 5 4 8 8 C 1.52997 * 109.46817 * 60.00194 * 7 6 5 9 9 C 1.52999 * 109.46961 * 60.00654 * 4 2 1 10 10 N 1.46901 * 109.46958 * 240.00782 * 2 1 3 11 11 C 1.46909 * 110.99811 * 183.95540 * 10 2 1 12 12 C 1.46890 * 111.00688 * 59.99635 * 10 2 1 13 13 C 1.50704 * 109.47426 * 189.99921 * 12 10 2 14 14 O 1.21274 * 119.99628 * 359.97438 * 13 12 10 15 15 N 1.34771 * 119.99861 * 179.97438 * 13 12 10 16 16 C 1.46502 * 119.99794 * 179.97438 * 15 13 12 17 17 C 1.50700 * 109.47016 * 180.02562 * 16 15 13 18 18 H 1.08003 * 120.00488 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99654 * 180.02562 * 17 16 15 20 20 N 1.31508 * 120.00097 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99719 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47222 * 89.99706 * 21 19 17 23 23 H 1.48507 * 109.47166 * 209.99836 * 21 19 17 24 24 H 1.48501 * 109.47436 * 329.99807 * 21 19 17 25 25 H 1.09001 * 109.46993 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47552 * 299.99728 * 1 2 3 27 27 H 1.09004 * 109.47298 * 59.99857 * 1 2 3 28 28 H 1.09002 * 109.47103 * 180.02562 * 4 2 1 29 29 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 30 30 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 31 31 H 1.08992 * 109.47399 * 59.99823 * 6 5 4 32 32 H 1.09004 * 109.46724 * 180.02562 * 6 5 4 33 33 H 1.08993 * 109.47662 * 180.02562 * 7 6 5 34 34 H 1.09002 * 109.47075 * 300.00932 * 7 6 5 35 35 H 1.09002 * 109.47153 * 60.00231 * 8 7 6 36 36 H 1.09001 * 109.47289 * 180.02562 * 8 7 6 37 37 H 1.09000 * 109.47486 * 59.99547 * 9 4 2 38 38 H 1.09002 * 109.46716 * 299.99630 * 9 4 2 39 39 H 1.08999 * 109.46977 * 59.98903 * 11 10 2 40 40 H 1.08994 * 109.46975 * 179.97438 * 11 10 2 41 41 H 1.09002 * 109.46718 * 299.99418 * 11 10 2 42 42 H 1.09000 * 109.47255 * 310.00375 * 12 10 2 43 43 H 1.09008 * 109.47055 * 69.99827 * 12 10 2 44 44 H 0.97007 * 120.00696 * 0.02562 * 15 13 12 45 45 H 1.08999 * 109.47057 * 300.00346 * 16 15 13 46 46 H 1.09000 * 109.46923 * 60.00537 * 16 15 13 47 47 H 0.97007 * 119.99915 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5300 0.0000 2.4984 6 6 2.0406 -0.7210 3.7476 7 6 1.5311 -2.1637 3.7479 8 6 2.0411 -2.8848 2.4987 9 6 1.5301 -2.1637 1.2491 10 7 2.0196 -0.6923 -1.1996 11 6 3.4851 -0.7944 -1.1871 12 6 1.5486 -0.0263 -2.4211 13 6 1.8579 -0.8909 -3.6160 14 8 2.4163 -1.9569 -3.4648 15 7 1.5141 -0.4796 -4.8525 16 6 1.8153 -1.3199 -6.0142 17 6 1.3320 -0.6366 -7.2673 18 1 0.8491 0.3275 -7.2049 19 6 1.5063 -1.2421 -8.4937 20 7 2.0947 -2.4158 -8.5699 21 14 0.9078 -0.3948 -10.0471 22 1 1.9919 0.4604 -10.5936 23 1 0.5290 -1.4180 -11.0546 24 1 -0.2734 0.4469 -9.7283 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 3.1300 -0.7208 1.2494 29 1 0.4400 -0.0001 2.4985 30 1 1.8933 1.0276 2.4984 31 1 3.1305 -0.7206 3.7474 32 1 1.6768 -0.2074 4.6376 33 1 1.8944 -2.6772 4.6380 34 1 0.4411 -2.1641 3.7481 35 1 3.1311 -2.8844 2.4984 36 1 1.6778 -3.9125 2.4986 37 1 1.8934 -2.6775 0.3591 38 1 0.4401 -2.1637 1.2491 39 1 3.8029 -1.3530 -0.3068 40 1 3.8209 -1.3114 -2.0860 41 1 3.9186 0.2053 -1.1592 42 1 0.4722 0.1325 -2.3564 43 1 2.0518 0.9348 -2.5280 44 1 1.0679 0.3732 -4.9735 45 1 2.8919 -1.4779 -6.0789 46 1 1.3128 -2.2813 -5.9072 47 1 2.2176 -2.8416 -9.4328 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773975514.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:07 Heat of formation + Delta-G solvation = -57.331477 kcal Electronic energy + Delta-G solvation = -22936.504157 eV Core-core repulsion = 19732.183962 eV Total energy + Delta-G solvation = -3204.320194 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.89310 -38.63822 -36.46582 -34.11079 -32.34351 -32.25500 -30.82325 -29.39470 -28.31934 -26.50125 -24.68679 -23.34695 -22.71922 -22.02297 -20.45399 -19.56905 -18.86097 -17.17256 -16.11483 -15.79003 -15.36727 -15.18999 -14.89579 -14.60426 -14.29769 -14.26121 -14.14897 -13.88441 -13.31401 -12.73834 -12.50109 -12.40022 -12.35099 -12.16708 -11.98475 -11.88518 -11.86012 -11.60710 -11.21869 -11.13574 -10.95171 -10.91962 -10.85787 -10.77778 -10.29401 -10.25420 -10.09348 -10.04422 -9.37658 -8.92603 -8.71158 -8.09838 -7.80704 -6.15265 -4.21993 3.24673 3.30753 3.33190 3.45235 3.71917 4.28839 4.48001 4.51509 4.59501 4.69581 4.92974 5.03139 5.13777 5.20747 5.27740 5.31764 5.36974 5.38478 5.45899 5.48152 5.50420 5.54153 5.58757 5.67995 5.73467 5.78082 5.86544 5.88271 5.93313 5.98315 6.05039 6.07533 6.19825 6.23878 6.37663 6.44864 6.51921 7.09446 7.24407 7.36642 7.49927 7.55192 7.70465 7.99422 8.68040 8.81991 9.18120 9.44984 10.94954 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.042950 B = 0.002856 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.770405 B = 9803.189515 C =10056.608137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.085 3.915 3 H 0.036 0.964 4 C -0.079 4.079 5 C -0.115 4.115 6 C -0.117 4.117 7 C -0.119 4.119 8 C -0.121 4.121 9 C -0.109 4.109 10 N -0.513 5.513 11 C 0.017 3.983 12 C 0.031 3.969 13 C 0.499 3.501 14 O -0.539 6.539 15 N -0.716 5.716 16 C 0.252 3.748 17 C -0.543 4.543 18 H 0.062 0.938 19 C 0.063 3.937 20 N -0.886 5.886 21 Si 0.903 3.097 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.273 1.273 25 H 0.069 0.931 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.079 0.921 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.091 0.909 41 H 0.014 0.986 42 H 0.101 0.899 43 H 0.054 0.946 44 H 0.389 0.611 45 H 0.025 0.975 46 H 0.026 0.974 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.837 6.193 23.067 23.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.024 4.024 3 H 0.054 0.946 4 C -0.097 4.097 5 C -0.153 4.153 6 C -0.155 4.155 7 C -0.157 4.157 8 C -0.159 4.159 9 C -0.146 4.146 10 N -0.237 5.237 11 C -0.130 4.130 12 C -0.101 4.101 13 C 0.283 3.717 14 O -0.416 6.416 15 N -0.366 5.366 16 C 0.131 3.869 17 C -0.581 4.581 18 H 0.080 0.920 19 C -0.141 4.141 20 N -0.523 5.523 21 Si 0.730 3.270 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.198 1.198 25 H 0.088 0.912 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.098 0.902 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.109 0.891 41 H 0.033 0.967 42 H 0.119 0.881 43 H 0.072 0.928 44 H 0.221 0.779 45 H 0.043 0.957 46 H 0.044 0.956 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.562 4.779 23.013 23.556 hybrid contribution -0.156 1.710 -1.034 2.005 sum -1.718 6.489 21.979 22.981 Atomic orbital electron populations 1.22035 0.94573 1.03010 1.01355 1.21667 0.95688 0.94948 0.90050 0.94614 1.21194 1.00179 0.95691 0.92675 1.21643 1.01046 0.98518 0.94107 1.21508 1.00629 0.95836 0.97530 1.21538 1.00651 0.95602 0.97869 1.21583 1.00564 0.98900 0.94853 1.21554 1.00682 0.94518 0.97893 1.61655 1.11135 1.51026 0.99928 1.22595 0.86600 0.99394 1.04449 1.22100 1.02275 0.95547 0.90146 1.20312 0.79953 0.87153 0.84260 1.90617 1.42265 1.23158 1.85605 1.46455 1.59564 1.23536 1.07018 1.19063 0.96693 0.90410 0.80728 1.21236 1.40318 1.05380 0.91164 0.91959 1.24955 0.94950 0.94874 0.99273 1.69976 1.41749 1.15042 1.25530 0.86424 0.79043 0.79117 0.82369 1.20493 1.21000 1.19762 0.91194 0.92121 0.92636 0.91167 0.91556 0.92427 0.92237 0.92384 0.92561 0.92176 0.92363 0.92249 0.90224 0.91978 0.91399 0.89063 0.96723 0.88134 0.92790 0.77913 0.95706 0.95574 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 8.28 37.16 0.31 -1.22 16 2 C 0.08 0.93 1.89 -67.72 -0.13 0.81 16 3 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 4 C -0.08 -0.78 1.52 -90.63 -0.14 -0.92 16 5 C -0.12 -0.95 4.85 -26.73 -0.13 -1.08 16 6 C -0.12 -0.90 5.92 -26.73 -0.16 -1.06 16 7 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 8 C -0.12 -1.12 5.92 -26.70 -0.16 -1.28 16 9 C -0.11 -1.16 4.69 -26.70 -0.13 -1.29 16 10 N -0.51 -7.24 3.60 -236.33 -0.85 -8.10 16 11 C 0.02 0.25 8.75 60.07 0.53 0.77 16 12 C 0.03 0.45 5.26 -4.98 -0.03 0.42 16 13 C 0.50 10.00 7.52 -10.99 -0.08 9.92 16 14 O -0.54 -12.91 14.33 5.56 0.08 -12.83 16 15 N -0.72 -15.16 5.55 -61.47 -0.34 -15.50 16 16 C 0.25 6.73 5.43 -5.19 -0.03 6.70 16 17 C -0.54 -14.80 9.28 -34.44 -0.32 -15.12 16 18 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 20 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 21 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 25 H 0.07 0.77 6.43 -51.93 -0.33 0.43 16 26 H 0.06 0.50 6.43 -51.93 -0.33 0.17 16 27 H 0.05 0.55 6.20 -51.93 -0.32 0.23 16 28 H 0.07 0.74 6.35 -51.93 -0.33 0.41 16 29 H 0.07 0.53 6.43 -51.93 -0.33 0.20 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 1.06 7.60 -51.93 -0.39 0.66 16 38 H 0.06 0.66 6.43 -51.93 -0.33 0.33 16 39 H 0.07 0.87 6.23 -51.93 -0.32 0.55 16 40 H 0.09 1.61 5.82 -51.93 -0.30 1.31 16 41 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 42 H 0.10 1.30 5.83 -51.93 -0.30 1.00 16 43 H 0.05 0.71 8.12 -51.92 -0.42 0.29 16 44 H 0.39 7.03 8.32 -40.82 -0.34 6.69 16 45 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 47 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 353.99 15.07 5.33 5.33 Total: -1.00 -31.11 353.99 -9.03 -40.14 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -8.26 Total: 3.35 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -0.72 Total: -2.79 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: -0.46 Total: -49.12 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.08 Total: -12.83 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.11 -9.03 -40.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773975514.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.188 kcal (2) G-P(sol) polarization free energy of solvation -31.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds