Wall clock time and date at job start Tue Mar 31 2020 05:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47229 * 2 1 4 4 C 1.53003 * 109.46813 * 240.00017 * 2 1 3 5 5 N 1.46498 * 109.47267 * 65.00199 * 4 2 1 6 6 C 1.34779 * 119.99961 * 180.02562 * 5 4 2 7 7 O 1.21584 * 120.00205 * 4.67641 * 6 5 4 8 8 N 1.34778 * 119.99537 * 184.68371 * 6 5 4 9 9 C 1.46498 * 119.99663 * 184.72934 * 8 6 5 10 10 C 1.52998 * 109.47310 * 184.70876 * 9 8 6 11 11 C 1.50704 * 115.54563 * 294.79303 * 10 9 8 12 12 H 1.08007 * 119.99953 * 121.64940 * 11 10 9 13 13 C 1.37876 * 120.00263 * 301.36461 * 11 10 9 14 14 N 1.31508 * 120.00236 * 173.19361 * 13 11 10 15 15 Si 1.86800 * 119.99944 * 353.19993 * 13 11 10 16 16 H 1.48499 * 109.47522 * 94.23656 * 15 13 11 17 17 H 1.48501 * 109.47109 * 214.24193 * 15 13 11 18 18 H 1.48507 * 109.46899 * 334.23708 * 15 13 11 19 19 C 1.53001 * 117.50012 * 80.46176 * 10 9 8 20 20 C 1.53001 * 117.50291 * 149.12365 * 10 9 8 21 21 C 1.53004 * 109.47472 * 120.00113 * 2 1 3 22 22 C 1.52994 * 109.47165 * 179.97438 * 21 2 1 23 23 C 1.53001 * 109.46673 * 299.99878 * 21 2 1 24 24 C 1.53001 * 109.47020 * 59.99764 * 21 2 1 25 25 H 1.09006 * 109.46531 * 299.99824 * 1 2 3 26 26 H 1.08994 * 109.47186 * 60.00246 * 1 2 3 27 27 H 1.09005 * 109.47042 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47441 * 304.99799 * 4 2 1 29 29 H 1.08999 * 109.46888 * 184.99803 * 4 2 1 30 30 H 0.97001 * 120.00008 * 359.97438 * 5 4 2 31 31 H 0.96995 * 120.00503 * 4.73507 * 8 6 5 32 32 H 1.08998 * 109.47069 * 64.70597 * 9 8 6 33 33 H 1.09003 * 109.47733 * 304.70710 * 9 8 6 34 34 H 0.97001 * 120.00265 * 180.02562 * 14 13 11 35 35 H 1.09000 * 117.49568 * 215.00735 * 19 10 9 36 36 H 1.08993 * 117.49839 * 0.02562 * 19 10 9 37 37 H 1.08999 * 117.49851 * 359.97438 * 20 10 9 38 38 H 1.08997 * 117.49732 * 144.97003 * 20 10 9 39 39 H 1.08994 * 109.47364 * 59.99992 * 22 21 2 40 40 H 1.09005 * 109.46975 * 180.02562 * 22 21 2 41 41 H 1.09004 * 109.47066 * 299.99601 * 22 21 2 42 42 H 1.09002 * 109.47278 * 60.00206 * 23 21 2 43 43 H 1.09005 * 109.46447 * 179.97438 * 23 21 2 44 44 H 1.08994 * 109.47300 * 299.99668 * 23 21 2 45 45 H 1.08994 * 109.47380 * 60.00166 * 24 21 2 46 46 H 1.08996 * 109.47355 * 180.02562 * 24 21 2 47 47 H 1.09002 * 109.47356 * 300.00054 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 1.6524 0.0353 -2.4424 6 6 1.9955 -0.4137 -3.6660 7 8 2.5516 -1.4882 -3.7854 8 7 1.7221 0.3286 -4.7572 9 6 2.0003 -0.2035 -6.0935 10 6 1.7118 0.8733 -7.1415 11 6 0.2702 1.2967 -7.2584 12 1 -0.0029 2.3307 -7.1073 13 6 -0.6994 0.3653 -7.5639 14 7 -1.9696 0.7045 -7.5347 15 14 -0.2087 -1.3787 -8.0192 16 1 -0.2464 -2.2360 -6.8073 17 1 -1.1556 -1.9109 -9.0318 18 1 1.1661 -1.3754 -8.5807 19 6 2.7827 1.9418 -7.3698 20 6 2.5488 0.8550 -8.4221 21 6 2.0401 -0.7213 1.2492 22 6 3.5700 -0.7218 1.2488 23 6 1.5301 0.0000 2.4984 24 6 1.5301 -2.1638 1.2492 25 1 -0.3632 0.5139 0.8901 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6053 -1.7198 -1.2952 29 1 3.1262 -0.7995 -1.2057 30 1 1.1482 0.8591 -2.3518 31 1 1.3413 1.2152 -4.6579 32 1 1.3657 -1.0701 -6.2788 33 1 3.0474 -0.4999 -6.1560 34 1 -2.6518 0.0491 -7.7493 35 1 2.4446 2.9511 -7.6046 36 1 3.6930 1.8775 -6.7738 37 1 3.3053 0.0762 -8.5179 38 1 2.0566 1.1489 -9.3492 39 1 3.9337 0.3057 1.2486 40 1 3.9334 -1.2361 2.1386 41 1 3.9330 -1.2359 0.3588 42 1 0.4401 0.0000 2.4985 43 1 1.8932 -0.5141 3.3884 44 1 1.8934 1.0276 2.4984 45 1 1.8933 -2.6776 0.3593 46 1 1.8931 -2.6775 2.1394 47 1 0.4401 -2.1638 1.2493 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797459417.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:00 Heat of formation + Delta-G solvation = -28.969850 kcal Electronic energy + Delta-G solvation = -23056.323520 eV Core-core repulsion = 19853.233178 eV Total energy + Delta-G solvation = -3203.090342 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.79622 -38.67429 -37.03311 -34.27070 -33.29169 -32.19406 -30.80630 -28.33148 -27.51106 -26.80931 -25.63290 -24.66294 -22.31288 -21.56983 -20.36399 -19.29606 -18.54692 -17.53993 -16.62628 -15.96428 -15.46902 -15.07768 -15.04067 -14.46216 -14.40089 -14.03878 -13.92044 -13.53058 -13.17213 -13.02098 -12.90608 -12.47056 -12.23703 -12.15545 -12.12246 -12.02843 -11.91661 -11.46370 -11.33245 -11.04198 -10.67034 -10.63455 -10.56169 -10.53683 -10.45633 -10.22356 -9.77087 -9.47933 -9.17839 -8.86068 -8.74869 -8.48334 -8.06856 -6.18179 -4.19431 3.19464 3.31627 3.40482 3.46279 3.75542 4.39339 4.47451 4.52202 4.57167 4.72528 4.96357 5.04490 5.12964 5.20903 5.23997 5.33065 5.43904 5.48437 5.56265 5.67779 5.71032 5.73768 5.75656 5.76806 5.85867 5.90206 5.95504 5.98684 6.01240 6.11858 6.16889 6.26232 6.29120 6.35173 6.46771 6.52932 6.72598 6.82872 6.95055 7.09741 7.25125 7.49758 7.68130 8.41446 8.61913 8.83819 9.15770 9.46098 10.92790 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023272 B = 0.003835 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.871378 B = 7300.168962 C = 7640.348691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.093 4.093 3 H 0.076 0.924 4 C 0.142 3.858 5 N -0.751 5.751 6 C 0.699 3.301 7 O -0.607 6.607 8 N -0.720 5.720 9 C 0.172 3.828 10 C -0.016 4.016 11 C -0.489 4.489 12 H 0.078 0.922 13 C 0.084 3.916 14 N -0.892 5.892 15 Si 0.870 3.130 16 H -0.278 1.278 17 H -0.293 1.293 18 H -0.252 1.252 19 C -0.180 4.180 20 C -0.189 4.189 21 C -0.060 4.060 22 C -0.148 4.148 23 C -0.142 4.142 24 C -0.149 4.149 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.395 0.605 31 H 0.402 0.598 32 H 0.052 0.948 33 H 0.048 0.952 34 H 0.265 0.735 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.053 0.947 44 H 0.054 0.946 45 H 0.061 0.939 46 H 0.052 0.948 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.102 -0.480 17.512 18.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.112 4.112 3 H 0.094 0.906 4 C 0.017 3.983 5 N -0.408 5.408 6 C 0.399 3.601 7 O -0.487 6.487 8 N -0.373 5.373 9 C 0.048 3.952 10 C -0.017 4.017 11 C -0.526 4.526 12 H 0.096 0.904 13 C -0.120 4.120 14 N -0.529 5.529 15 Si 0.698 3.302 16 H -0.204 1.204 17 H -0.220 1.220 18 H -0.176 1.176 19 C -0.218 4.218 20 C -0.227 4.227 21 C -0.060 4.060 22 C -0.205 4.205 23 C -0.199 4.199 24 C -0.206 4.206 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.229 0.771 31 H 0.237 0.763 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.107 0.893 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.080 0.920 46 H 0.072 0.928 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.418 -1.541 17.345 18.927 hybrid contribution -0.361 -0.180 -0.244 0.472 sum 7.057 -1.721 17.101 18.580 Atomic orbital electron populations 1.21979 0.94669 1.02502 1.01898 1.21397 0.96449 0.99744 0.93566 0.90592 1.21309 0.99609 0.95112 0.82248 1.45109 1.61889 1.29090 1.04706 1.16019 0.79620 0.83939 0.80510 1.90855 1.49345 1.22600 1.85898 1.44987 1.67608 1.20033 1.04665 1.20922 0.98185 0.95974 0.80089 1.19604 0.93633 0.95293 0.93155 1.20248 0.86836 0.96641 1.48865 0.90442 1.24900 0.94550 0.98591 0.93923 1.69891 0.99790 1.35443 1.47729 0.87006 0.79620 0.85022 0.78536 1.20417 1.22006 1.17573 1.22769 0.99991 0.95146 1.03846 1.23060 1.03603 1.00906 0.95134 1.20463 0.95539 0.95647 0.94375 1.21981 0.94553 1.01892 1.02046 1.21920 1.01292 1.00051 0.96662 1.22021 1.01387 0.95269 1.01964 0.92276 0.92327 0.92105 0.91704 0.91798 0.77137 0.76292 0.93007 0.93349 0.92474 0.89718 0.90887 0.91130 0.89295 0.92634 0.92720 0.91987 0.92235 0.92776 0.92711 0.92048 0.92841 0.92198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 8.36 37.16 0.31 -1.14 16 2 C -0.09 -0.88 1.79 -90.62 -0.16 -1.04 16 3 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 4 C 0.14 1.80 4.35 -4.04 -0.02 1.79 16 5 N -0.75 -11.10 5.29 -65.23 -0.34 -11.45 16 6 C 0.70 13.69 8.55 -86.92 -0.74 12.95 16 7 O -0.61 -14.09 16.33 5.29 0.09 -14.00 16 8 N -0.72 -14.33 5.48 -65.23 -0.36 -14.68 16 9 C 0.17 3.83 5.08 -4.04 -0.02 3.81 16 10 C -0.02 -0.35 0.85 -155.66 -0.13 -0.48 16 11 C -0.49 -12.87 9.19 -34.44 -0.32 -13.18 16 12 H 0.08 2.20 8.06 -52.48 -0.42 1.78 16 13 C 0.08 2.33 5.46 -17.82 -0.10 2.23 16 14 N -0.89 -26.26 13.96 55.43 0.77 -25.49 16 15 Si 0.87 21.73 24.69 -169.99 -4.20 17.53 16 16 H -0.28 -7.14 6.96 56.52 0.39 -6.75 16 17 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 18 H -0.25 -5.97 6.12 56.52 0.35 -5.62 16 19 C -0.18 -3.50 9.96 -26.69 -0.27 -3.76 16 20 C -0.19 -3.89 8.70 -26.69 -0.23 -4.12 16 21 C -0.06 -0.50 0.57 -154.51 -0.09 -0.59 16 22 C -0.15 -1.23 8.13 37.15 0.30 -0.92 16 23 C -0.14 -1.03 8.12 37.16 0.30 -0.73 16 24 C -0.15 -1.29 7.77 37.16 0.29 -1.00 16 25 H 0.06 0.48 6.43 -51.93 -0.33 0.15 16 26 H 0.06 0.60 7.18 -51.93 -0.37 0.23 16 27 H 0.06 0.60 6.43 -51.93 -0.33 0.27 16 28 H 0.06 0.92 6.71 -51.93 -0.35 0.57 16 29 H 0.06 0.85 6.17 -51.93 -0.32 0.53 16 30 H 0.39 4.93 7.68 -40.82 -0.31 4.61 16 31 H 0.40 7.42 8.36 -40.82 -0.34 7.08 16 32 H 0.05 1.28 4.25 -51.93 -0.22 1.06 16 33 H 0.05 1.04 8.06 -51.93 -0.42 0.63 16 34 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 36 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.58 6.32 -51.93 -0.33 0.25 16 42 H 0.06 0.42 6.43 -51.93 -0.33 0.09 16 43 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.06 0.60 6.54 -51.93 -0.34 0.26 16 46 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.06 0.51 6.43 -51.93 -0.33 0.17 16 LS Contribution 357.59 15.07 5.39 5.39 Total: -1.00 -31.13 357.59 -7.71 -38.84 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -8.19 Total: 10.04 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: -0.87 Total: -6.19 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: 0.07 Total: -51.61 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: 0.09 Total: -14.00 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.20 Total: 17.53 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.13 -7.71 -38.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797459417.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.871 kcal (2) G-P(sol) polarization free energy of solvation -31.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds