Wall clock time and date at job start Tue Mar 31 2020 05:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47254 * 2 1 4 4 C 1.52994 * 109.47149 * 120.00331 * 2 1 3 5 5 N 1.46504 * 109.47245 * 294.99996 * 4 2 1 6 6 C 1.34775 * 120.00187 * 180.02562 * 5 4 2 7 7 O 1.21580 * 119.99878 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99713 * 180.02562 * 6 5 4 9 9 C 1.46499 * 119.99769 * 179.97438 * 8 6 5 10 10 C 1.52994 * 109.47139 * 178.28472 * 9 8 6 11 11 C 1.50707 * 115.55177 * 65.14298 * 10 9 8 12 12 H 1.07996 * 119.99740 * 265.40659 * 11 10 9 13 13 C 1.37875 * 119.99843 * 85.40562 * 11 10 9 14 14 N 1.31508 * 120.00168 * 353.55835 * 13 11 10 15 15 Si 1.86799 * 119.99707 * 173.55900 * 13 11 10 16 16 H 1.48500 * 109.46955 * 59.99929 * 15 13 11 17 17 H 1.48500 * 109.47166 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47097 * 299.99998 * 15 13 11 19 19 C 1.53000 * 117.50039 * 279.47126 * 10 9 8 20 20 C 1.53008 * 117.49999 * 210.81130 * 10 9 8 21 21 C 1.53006 * 109.47023 * 240.00429 * 2 1 3 22 22 C 1.53007 * 109.46946 * 299.99919 * 21 2 1 23 23 C 1.52998 * 109.47023 * 180.02562 * 21 2 1 24 24 C 1.52994 * 109.47238 * 59.99956 * 21 2 1 25 25 H 1.08998 * 109.46994 * 299.99918 * 1 2 3 26 26 H 1.09006 * 109.47339 * 59.99656 * 1 2 3 27 27 H 1.08998 * 109.47254 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47569 * 54.99771 * 4 2 1 29 29 H 1.08995 * 109.47197 * 174.99762 * 4 2 1 30 30 H 0.97004 * 119.99152 * 359.97438 * 5 4 2 31 31 H 0.97003 * 120.00457 * 359.97438 * 8 6 5 32 32 H 1.08998 * 109.47207 * 298.28669 * 9 8 6 33 33 H 1.09000 * 109.47139 * 58.28465 * 9 8 6 34 34 H 0.97000 * 120.00189 * 185.07102 * 14 13 11 35 35 H 1.09002 * 117.49825 * 0.02562 * 19 10 9 36 36 H 1.09001 * 117.50048 * 145.01820 * 19 10 9 37 37 H 1.09003 * 117.49963 * 214.97832 * 20 10 9 38 38 H 1.08998 * 117.49888 * 359.97438 * 20 10 9 39 39 H 1.09008 * 109.46924 * 300.00403 * 22 21 2 40 40 H 1.08998 * 109.47244 * 180.02562 * 22 21 2 41 41 H 1.08998 * 109.46955 * 59.99860 * 22 21 2 42 42 H 1.08998 * 109.46994 * 179.97438 * 23 21 2 43 43 H 1.09001 * 109.46916 * 299.99976 * 23 21 2 44 44 H 1.09006 * 109.47339 * 59.99915 * 23 21 2 45 45 H 1.09010 * 109.47123 * 299.99948 * 24 21 2 46 46 H 1.08998 * 109.47313 * 60.00262 * 24 21 2 47 47 H 1.08998 * 109.46969 * 180.02562 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 1.6524 0.0352 2.4424 6 6 1.9964 -0.4132 3.6659 7 8 2.6280 -1.4459 3.7794 8 7 1.6394 0.2825 4.7635 9 6 2.0128 -0.2052 6.0935 10 6 1.5265 0.7839 7.1546 11 6 0.0310 0.9277 7.2724 12 1 -0.4795 1.7150 6.7377 13 6 -0.6854 0.0541 8.0627 14 7 -0.0852 -0.9791 8.6119 15 14 -2.5087 0.3382 8.3533 16 1 -3.2263 0.3170 7.0533 17 1 -3.0431 -0.7340 9.2307 18 1 -2.7062 1.6572 9.0062 19 6 2.3777 2.0313 7.4006 20 6 2.3511 0.9057 8.4377 21 6 2.0400 -0.7212 -1.2494 22 6 1.5299 -2.1637 -1.2494 23 6 3.5700 -0.7217 -1.2490 24 6 1.5300 0.0001 -2.4985 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.6054 -1.7199 1.2951 29 1 3.1262 -0.7995 1.2055 30 1 1.1488 0.8594 2.3517 31 1 1.1352 1.1063 4.6730 32 1 1.5530 -1.1783 6.2660 33 1 3.0970 -0.2998 6.1547 34 1 -0.6023 -1.6338 9.1067 35 1 3.2839 2.1474 6.8061 36 1 1.8560 2.9558 7.6479 37 1 1.8120 1.0902 9.3669 38 1 3.2398 0.2808 8.5260 39 1 1.8933 -2.6776 -0.3593 40 1 1.8936 -2.6777 -2.1392 41 1 0.4400 -2.1637 -1.2493 42 1 3.9333 -1.2359 -2.1388 43 1 3.9336 0.3058 -1.2487 44 1 3.9330 -1.2359 -0.3590 45 1 0.4399 0.0001 -2.4985 46 1 1.8933 1.0277 -2.4985 47 1 1.8929 -0.5140 -3.3885 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797459418.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:02 Heat of formation + Delta-G solvation = -33.743979 kcal Electronic energy + Delta-G solvation = -22835.983733 eV Core-core repulsion = 19632.686369 eV Total energy + Delta-G solvation = -3203.297364 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.71850 -38.58097 -36.69661 -34.20587 -33.15870 -31.95080 -30.77371 -28.28511 -27.50019 -26.42184 -25.52503 -24.66766 -22.27392 -21.17454 -20.26007 -19.35163 -18.52302 -17.44697 -16.36123 -15.82552 -15.32417 -15.03166 -14.69482 -14.46620 -14.31879 -14.07991 -13.84790 -13.56744 -13.09675 -13.00615 -12.63373 -12.37136 -12.15894 -12.08945 -11.91532 -11.81206 -11.56787 -11.37796 -11.32199 -10.98516 -10.90163 -10.63115 -10.55243 -10.53256 -10.44382 -10.24740 -9.68847 -9.47015 -8.94843 -8.72407 -8.47448 -8.22094 -7.90616 -6.05566 -4.14249 3.27645 3.30829 3.33876 3.34915 3.88153 4.36486 4.49910 4.53744 4.58268 4.93299 4.97427 5.13803 5.20982 5.22510 5.33361 5.39258 5.44476 5.49520 5.57063 5.68692 5.73785 5.75928 5.76788 5.87251 5.92095 5.95718 6.01880 6.07166 6.12260 6.27541 6.35160 6.37324 6.50398 6.63571 6.72054 6.88337 6.90058 7.11428 7.38713 7.45655 7.50854 7.66164 7.83116 8.36538 8.73402 8.86262 9.28331 9.52230 11.02275 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022000 B = 0.003551 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.404554 B = 7883.368929 C = 8504.806561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.093 4.093 3 H 0.075 0.925 4 C 0.142 3.858 5 N -0.754 5.754 6 C 0.697 3.303 7 O -0.605 6.605 8 N -0.721 5.721 9 C 0.183 3.817 10 C 0.029 3.971 11 C -0.501 4.501 12 H 0.059 0.941 13 C 0.074 3.926 14 N -0.874 5.874 15 Si 0.890 3.110 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C -0.211 4.211 20 C -0.148 4.148 21 C -0.060 4.060 22 C -0.149 4.149 23 C -0.148 4.148 24 C -0.142 4.142 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.392 0.608 31 H 0.395 0.605 32 H 0.069 0.931 33 H 0.034 0.966 34 H 0.262 0.738 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.052 0.948 41 H 0.059 0.941 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.062 0.938 45 H 0.058 0.942 46 H 0.053 0.947 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.615 2.997 -19.069 19.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.111 4.111 3 H 0.093 0.907 4 C 0.018 3.982 5 N -0.411 5.411 6 C 0.397 3.603 7 O -0.485 6.485 8 N -0.374 5.374 9 C 0.059 3.941 10 C 0.028 3.972 11 C -0.538 4.538 12 H 0.077 0.923 13 C -0.130 4.130 14 N -0.510 5.510 15 Si 0.718 3.282 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.248 4.248 20 C -0.186 4.186 21 C -0.060 4.060 22 C -0.206 4.206 23 C -0.205 4.205 24 C -0.199 4.199 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.225 0.775 31 H 0.228 0.772 32 H 0.087 0.913 33 H 0.052 0.948 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.073 0.927 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.189 1.878 -18.739 19.101 hybrid contribution -1.501 0.818 0.190 1.720 sum 1.688 2.696 -18.549 18.820 Atomic orbital electron populations 1.21972 0.94771 1.02479 1.01747 1.21394 0.96352 0.99727 0.93676 0.90676 1.21282 0.99701 0.94998 0.82245 1.45132 1.62285 1.28838 1.04815 1.16051 0.80226 0.83593 0.80455 1.90861 1.46437 1.25183 1.86015 1.45138 1.59316 1.27564 1.05342 1.20826 0.96016 0.98527 0.78739 1.19034 0.92999 0.92016 0.93141 1.20292 0.89527 1.15323 1.28693 0.92324 1.24979 0.98066 0.95134 0.94825 1.69963 1.35570 1.11082 1.34371 0.86697 0.85390 0.77866 0.78235 1.20307 1.21282 1.20224 1.23017 1.01775 0.94407 1.05619 1.22490 1.00863 1.00302 0.94942 1.20466 0.95578 0.95658 0.94346 1.22023 1.01328 0.95262 1.02020 1.21982 0.94522 1.01887 1.02097 1.21919 1.01236 1.00041 0.96712 0.92453 0.92348 0.92084 0.91797 0.91783 0.77480 0.77181 0.91284 0.94813 0.92792 0.91664 0.90437 0.89844 0.91654 0.91989 0.92846 0.92233 0.92730 0.92664 0.91907 0.92281 0.92746 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 8.36 37.16 0.31 -1.06 16 2 C -0.09 -0.86 1.79 -90.62 -0.16 -1.02 16 3 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 4 C 0.14 1.81 4.34 -4.04 -0.02 1.79 16 5 N -0.75 -11.02 5.29 -65.23 -0.34 -11.36 16 6 C 0.70 13.76 8.57 -86.92 -0.74 13.01 16 7 O -0.61 -14.38 16.34 5.30 0.09 -14.29 16 8 N -0.72 -14.46 5.48 -65.23 -0.36 -14.82 16 9 C 0.18 4.27 5.50 -4.04 -0.02 4.24 16 10 C 0.03 0.69 1.38 -155.66 -0.21 0.47 16 11 C -0.50 -12.95 8.63 -34.44 -0.30 -13.24 16 12 H 0.06 1.48 7.82 -52.49 -0.41 1.07 16 13 C 0.07 1.98 5.39 -17.82 -0.10 1.88 16 14 N -0.87 -24.46 12.91 55.43 0.72 -23.75 16 15 Si 0.89 20.65 29.55 -169.99 -5.02 15.63 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 C -0.21 -4.42 9.96 -26.69 -0.27 -4.69 16 20 C -0.15 -3.41 9.42 -26.69 -0.25 -3.66 16 21 C -0.06 -0.50 0.57 -154.51 -0.09 -0.58 16 22 C -0.15 -1.28 7.77 37.16 0.29 -0.99 16 23 C -0.15 -1.24 8.13 37.16 0.30 -0.94 16 24 C -0.14 -1.01 8.12 37.15 0.30 -0.71 16 25 H 0.06 0.55 7.18 -51.93 -0.37 0.17 16 26 H 0.06 0.45 6.43 -51.93 -0.33 0.12 16 27 H 0.06 0.58 6.43 -51.93 -0.33 0.25 16 28 H 0.06 0.90 6.71 -51.93 -0.35 0.55 16 29 H 0.06 0.87 6.17 -51.93 -0.32 0.55 16 30 H 0.39 4.72 7.67 -40.82 -0.31 4.40 16 31 H 0.39 7.16 8.38 -40.82 -0.34 6.82 16 32 H 0.07 1.86 8.14 -51.93 -0.42 1.43 16 33 H 0.03 0.78 8.09 -51.93 -0.42 0.36 16 34 H 0.26 7.09 8.32 -40.82 -0.34 6.75 16 35 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 37 H 0.08 2.04 8.14 -51.93 -0.42 1.61 16 38 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 39 H 0.06 0.60 6.54 -51.92 -0.34 0.26 16 40 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.50 6.43 -51.93 -0.33 0.16 16 42 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.59 6.32 -51.93 -0.33 0.27 16 45 H 0.06 0.41 6.43 -51.92 -0.33 0.07 16 46 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 367.30 15.07 5.54 5.54 Total: -1.00 -30.10 367.30 -8.66 -38.76 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: -8.32 Total: 9.79 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -0.96 Total: -5.49 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: 0.01 Total: -49.93 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: 0.09 Total: -14.29 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.10 -8.66 -38.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797459418.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.014 kcal (2) G-P(sol) polarization free energy of solvation -30.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds