Wall clock time and date at job start Tue Mar 31 2020 05:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47097 * 2 1 4 4 C 1.52997 * 109.46978 * 240.00199 * 2 1 3 5 5 C 1.53002 * 109.47415 * 59.99902 * 4 2 1 6 6 C 1.53000 * 109.47233 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47060 * 299.99657 * 6 5 4 8 8 C 1.52999 * 109.47317 * 59.99960 * 7 6 5 9 9 C 1.52997 * 109.47232 * 179.97438 * 4 2 1 10 10 N 1.46896 * 109.47159 * 120.00127 * 2 1 3 11 11 C 1.46900 * 111.00237 * 58.95532 * 10 2 1 12 12 C 1.46900 * 111.00207 * 294.99677 * 10 2 1 13 13 C 1.50701 * 109.47386 * 190.00395 * 12 10 2 14 14 O 1.21279 * 119.99899 * 0.02562 * 13 12 10 15 15 N 1.34778 * 119.99878 * 180.02562 * 13 12 10 16 16 C 1.46501 * 119.99670 * 179.97438 * 15 13 12 17 17 C 1.50702 * 109.46753 * 180.02562 * 16 15 13 18 18 H 1.08002 * 120.00302 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99782 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00070 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 119.99942 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47249 * 90.00268 * 21 19 17 23 23 H 1.48502 * 109.47221 * 210.00556 * 21 19 17 24 24 H 1.48501 * 109.47373 * 329.99932 * 21 19 17 25 25 H 1.08996 * 109.46698 * 299.99981 * 1 2 3 26 26 H 1.09001 * 109.47142 * 60.00035 * 1 2 3 27 27 H 1.09002 * 109.46838 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47497 * 299.99550 * 4 2 1 29 29 H 1.08992 * 109.47063 * 59.99950 * 5 4 2 30 30 H 1.09004 * 109.46733 * 299.99664 * 5 4 2 31 31 H 1.09002 * 109.47398 * 59.99826 * 6 5 4 32 32 H 1.09001 * 109.47194 * 180.02562 * 6 5 4 33 33 H 1.08996 * 109.47853 * 180.02562 * 7 6 5 34 34 H 1.09002 * 109.47153 * 300.00319 * 7 6 5 35 35 H 1.09000 * 109.47486 * 180.02562 * 8 7 6 36 36 H 1.09002 * 109.46716 * 60.00091 * 8 7 6 37 37 H 1.09002 * 109.47153 * 299.99992 * 9 4 2 38 38 H 1.09001 * 109.47289 * 60.00075 * 9 4 2 39 39 H 1.09005 * 109.47131 * 59.99925 * 11 10 2 40 40 H 1.08999 * 109.46770 * 179.97438 * 11 10 2 41 41 H 1.08992 * 109.46804 * 299.99655 * 11 10 2 42 42 H 1.08999 * 109.46948 * 310.00162 * 12 10 2 43 43 H 1.09004 * 109.46946 * 70.00196 * 12 10 2 44 44 H 0.96997 * 120.00137 * 0.02562 * 15 13 12 45 45 H 1.08999 * 109.47144 * 299.99826 * 16 15 13 46 46 H 1.08996 * 109.47285 * 60.00394 * 16 15 13 47 47 H 0.96996 * 120.00149 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5300 0.0000 -2.4985 6 6 2.0394 -0.7216 -3.7478 7 6 3.5694 -0.7220 -3.7481 8 6 4.0795 -1.4432 -2.4989 9 6 3.5699 -0.7207 -1.2496 10 7 2.0197 -0.6925 1.1994 11 6 1.5284 -2.0761 1.2459 12 6 1.6488 0.0391 2.4180 13 6 2.3681 -0.5571 3.6005 14 8 3.1164 -1.4985 3.4434 15 7 2.1798 -0.0442 4.8325 16 6 2.8786 -0.6242 5.9821 17 6 2.4972 0.1257 7.2324 18 1 1.8039 0.9520 7.1763 19 6 3.0341 -0.2424 8.4478 20 7 2.7009 0.4117 9.5391 21 14 4.2336 -1.6710 8.5448 22 1 5.6190 -1.1671 8.3662 23 1 4.1133 -2.3294 9.8705 24 1 3.9221 -2.6525 7.4748 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6767 -1.7489 -1.2493 29 1 1.8933 1.0276 -2.4985 30 1 0.4399 0.0000 -2.4985 31 1 1.6758 -1.7491 -3.7476 32 1 1.6765 -0.2075 -4.6378 33 1 3.9325 -1.2357 -4.6383 34 1 3.9331 0.3055 -3.7483 35 1 5.1695 -1.4432 -2.4989 36 1 3.7159 -2.4708 -2.4987 37 1 3.9329 0.3071 -1.2498 38 1 3.9337 -1.2343 -0.3597 39 1 1.8763 -2.6151 0.3646 40 1 1.9062 -2.5658 2.1435 41 1 0.4386 -2.0742 1.2640 42 1 1.9299 1.0870 2.3124 43 1 0.5723 -0.0346 2.5726 44 1 1.5810 0.7085 4.9582 45 1 2.5975 -1.6720 6.0873 46 1 3.9551 -0.5505 5.8279 47 1 3.0783 0.1525 10.3942 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000801600551.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:09 Heat of formation + Delta-G solvation = -56.306265 kcal Electronic energy + Delta-G solvation = -22955.564472 eV Core-core repulsion = 19751.288734 eV Total energy + Delta-G solvation = -3204.275738 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.95633 -38.73947 -36.73289 -34.23645 -32.37051 -32.18438 -30.88480 -28.96576 -28.78863 -27.10192 -25.31598 -23.06235 -22.51340 -21.73541 -20.11994 -19.71949 -19.44858 -17.32539 -16.27899 -16.04114 -15.39931 -15.34038 -14.95048 -14.44018 -14.36340 -14.08832 -14.03141 -13.76288 -13.57604 -13.34347 -12.76859 -12.62213 -12.42430 -12.21855 -12.12335 -11.98175 -11.73205 -11.56458 -11.37821 -11.23839 -11.15927 -10.99100 -10.91068 -10.71309 -10.41670 -10.11190 -10.09328 -9.96159 -9.48432 -9.09925 -8.76498 -8.17725 -8.04335 -6.20816 -4.22879 3.26588 3.30643 3.34176 3.42952 3.63760 4.31146 4.35037 4.42963 4.60641 4.67157 4.86723 5.01856 5.09436 5.14568 5.17652 5.23193 5.30039 5.31898 5.40520 5.41603 5.49760 5.50677 5.53865 5.58167 5.62706 5.67015 5.79845 5.81619 5.88813 5.97144 6.00552 6.04566 6.06623 6.22071 6.29650 6.40934 6.47429 6.81172 7.05491 7.09435 7.18272 7.27858 7.41934 8.16705 8.55035 8.76988 9.00362 9.39755 10.91190 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034564 B = 0.003092 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.908255 B = 9053.070419 C = 9505.036323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.084 3.916 3 H 0.081 0.919 4 C -0.076 4.076 5 C -0.115 4.115 6 C -0.118 4.118 7 C -0.120 4.120 8 C -0.121 4.121 9 C -0.108 4.108 10 N -0.511 5.511 11 C 0.014 3.986 12 C 0.034 3.966 13 C 0.501 3.499 14 O -0.541 6.541 15 N -0.709 5.709 16 C 0.222 3.778 17 C -0.543 4.543 18 H 0.079 0.921 19 C 0.077 3.923 20 N -0.893 5.893 21 Si 0.878 3.122 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.261 1.261 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.088 0.912 41 H 0.021 0.979 42 H 0.098 0.902 43 H 0.060 0.940 44 H 0.395 0.605 45 H 0.023 0.977 46 H 0.020 0.980 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.823 -0.620 -25.570 25.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.025 4.025 3 H 0.099 0.901 4 C -0.095 4.095 5 C -0.153 4.153 6 C -0.155 4.155 7 C -0.157 4.157 8 C -0.158 4.158 9 C -0.145 4.145 10 N -0.234 5.234 11 C -0.134 4.134 12 C -0.097 4.097 13 C 0.285 3.715 14 O -0.419 6.419 15 N -0.358 5.358 16 C 0.100 3.900 17 C -0.581 4.581 18 H 0.097 0.903 19 C -0.127 4.127 20 N -0.531 5.531 21 Si 0.704 3.296 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.185 1.185 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.107 0.893 41 H 0.039 0.961 42 H 0.116 0.884 43 H 0.078 0.922 44 H 0.228 0.772 45 H 0.041 0.959 46 H 0.038 0.962 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.723 -1.313 -25.462 25.640 hybrid contribution -0.642 -0.177 0.392 0.772 sum -3.364 -1.490 -25.070 25.339 Atomic orbital electron populations 1.22560 0.97882 1.02368 1.02217 1.21812 0.92311 0.98292 0.90073 0.90094 1.21177 0.96307 0.99408 0.92585 1.21641 1.00145 0.99426 0.94109 1.21509 0.95844 1.00595 0.97562 1.21545 0.95606 1.00706 0.97866 1.21571 1.00109 0.99331 0.94820 1.21491 0.94307 1.00779 0.97955 1.61857 1.59110 1.02331 1.00110 1.22615 0.96896 0.89652 1.04209 1.22002 0.98409 0.99200 0.90070 1.20386 0.82803 0.84131 0.84154 1.90612 1.37823 1.28336 1.85136 1.46176 1.47157 1.35348 1.07167 1.19453 0.92432 0.94566 0.83536 1.21106 1.29118 1.17745 0.90110 0.90303 1.24804 0.96096 0.96466 0.95314 1.69882 1.43792 1.40544 0.98849 0.86805 0.81792 0.83105 0.77909 1.19838 1.20952 1.18512 0.92514 0.91819 0.92186 0.91141 0.92005 0.91964 0.92217 0.92374 0.92556 0.92169 0.92268 0.92339 0.92422 0.90199 0.91540 0.89313 0.96061 0.88424 0.92246 0.77179 0.95863 0.96196 0.92282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.72 8.15 37.16 0.30 -1.42 16 2 C 0.08 0.86 1.93 -67.72 -0.13 0.73 16 3 H 0.08 0.82 8.03 -51.93 -0.42 0.41 16 4 C -0.08 -0.71 1.43 -90.62 -0.13 -0.84 16 5 C -0.12 -0.90 4.85 -26.73 -0.13 -1.03 16 6 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 7 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 8 C -0.12 -1.08 5.93 -26.71 -0.16 -1.24 16 9 C -0.11 -1.11 5.05 -26.71 -0.13 -1.25 16 10 N -0.51 -6.75 3.72 -236.33 -0.88 -7.63 16 11 C 0.01 0.19 8.46 60.06 0.51 0.69 16 12 C 0.03 0.47 4.89 -4.98 -0.02 0.45 16 13 C 0.50 9.46 7.52 -10.98 -0.08 9.38 16 14 O -0.54 -12.16 14.33 5.56 0.08 -12.08 16 15 N -0.71 -14.32 5.55 -61.47 -0.34 -14.66 16 16 C 0.22 5.49 4.50 -5.19 -0.02 5.47 16 17 C -0.54 -14.94 9.83 -34.44 -0.34 -15.28 16 18 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 19 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 20 N -0.89 -26.62 13.96 55.43 0.77 -25.85 16 21 Si 0.88 21.59 27.47 -169.99 -4.67 16.93 16 22 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.26 -6.38 6.54 56.52 0.37 -6.01 16 25 H 0.06 0.52 6.75 -51.93 -0.35 0.17 16 26 H 0.06 0.49 6.43 -51.93 -0.33 0.16 16 27 H 0.06 0.56 6.38 -51.93 -0.33 0.23 16 28 H 0.07 0.70 6.42 -51.93 -0.33 0.37 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.45 6.43 -51.93 -0.33 0.12 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 1.02 7.60 -51.93 -0.39 0.63 16 39 H 0.07 0.81 6.33 -51.93 -0.33 0.48 16 40 H 0.09 1.47 5.83 -51.93 -0.30 1.17 16 41 H 0.02 0.26 6.28 -51.93 -0.33 -0.07 16 42 H 0.10 1.18 8.00 -51.93 -0.42 0.76 16 43 H 0.06 0.73 6.94 -51.93 -0.36 0.37 16 44 H 0.39 6.99 8.32 -40.82 -0.34 6.66 16 45 H 0.02 0.61 7.20 -51.93 -0.37 0.23 16 46 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 47 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 351.43 15.07 5.30 5.30 Total: -1.00 -31.02 351.43 -8.79 -39.82 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -8.30 Total: 2.54 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -0.76 Total: -4.36 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: -0.45 Total: -48.14 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.08 Total: -12.08 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.02 -8.79 -39.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801600551.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.491 kcal (2) G-P(sol) polarization free energy of solvation -31.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds