Wall clock time and date at job start Tue Mar 31 2020 05:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47449 * 2 1 4 4 C 1.53004 * 109.46872 * 120.00194 * 2 1 3 5 5 N 1.46892 * 109.47410 * 64.16181 * 4 2 1 6 6 C 1.46897 * 111.00320 * 77.31941 * 5 4 2 7 7 C 1.50698 * 109.47161 * 282.86429 * 6 5 4 8 8 H 1.08001 * 119.99882 * 355.19316 * 7 6 5 9 9 C 1.37884 * 119.99971 * 175.19764 * 7 6 5 10 10 N 1.31512 * 119.99856 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 119.99825 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.46863 * 90.00495 * 11 9 7 13 13 H 1.48497 * 109.47024 * 210.00194 * 11 9 7 14 14 H 1.48496 * 109.47263 * 330.00576 * 11 9 7 15 15 C 1.46903 * 110.99922 * 201.27449 * 5 4 2 16 16 N 1.46506 * 109.46880 * 84.58142 * 15 5 4 17 17 C 1.46765 * 124.34926 * 79.97778 * 16 15 5 18 18 C 1.54485 * 105.47348 * 197.01421 * 17 16 15 19 19 H 1.08998 * 110.96786 * 92.70125 * 18 17 16 20 20 C 1.52990 * 110.96982 * 216.46542 * 18 17 16 21 21 C 1.54634 * 101.76065 * 334.58194 * 18 17 16 22 22 H 1.09002 * 110.48133 * 143.60568 * 21 18 17 23 23 C 1.52998 * 110.48689 * 266.11629 * 21 18 17 24 24 C 1.34421 * 124.34818 * 259.67276 * 16 15 5 25 25 O 1.21281 * 124.93998 * 359.57504 * 24 16 15 26 26 H 1.09003 * 109.46859 * 55.35102 * 1 2 3 27 27 H 1.09009 * 109.46881 * 295.35836 * 1 2 3 28 28 H 1.08991 * 109.47511 * 175.36101 * 1 2 3 29 29 H 1.09003 * 109.46944 * 239.99172 * 2 1 3 30 30 H 1.08995 * 109.47247 * 60.00042 * 3 2 1 31 31 H 1.09008 * 109.46880 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47096 * 299.99932 * 3 2 1 33 33 H 1.09000 * 109.46666 * 184.16195 * 4 2 1 34 34 H 1.09001 * 109.46638 * 304.15612 * 4 2 1 35 35 H 1.09003 * 109.47021 * 42.86696 * 6 5 4 36 36 H 1.09000 * 109.47337 * 162.86016 * 6 5 4 37 37 H 0.97003 * 119.99698 * 179.97438 * 10 9 7 38 38 H 1.08997 * 109.47218 * 204.57865 * 15 5 4 39 39 H 1.08992 * 109.47370 * 324.58123 * 15 5 4 40 40 H 1.09004 * 110.24608 * 316.01088 * 17 16 15 41 41 H 1.09005 * 110.24669 * 77.92529 * 17 16 15 42 42 H 1.09004 * 109.47556 * 58.54194 * 20 18 17 43 43 H 1.09002 * 109.47413 * 178.54673 * 20 18 17 44 44 H 1.09004 * 109.47255 * 298.54460 * 20 18 17 45 45 H 1.09001 * 109.47096 * 60.00453 * 23 21 18 46 46 H 1.09004 * 109.46838 * 180.02562 * 23 21 18 47 47 H 1.08998 * 109.47087 * 300.00347 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.6341 -2.1322 1.2001 6 6 2.4881 -2.8939 0.2790 7 6 2.0766 -2.6060 -1.1418 8 1 1.2139 -1.9871 -1.3392 9 6 2.8015 -3.1328 -2.1897 10 7 2.4421 -2.8820 -3.4296 11 14 4.2941 -4.2029 -1.8481 12 1 3.8728 -5.6236 -1.7511 13 1 5.2747 -4.0518 -2.9530 14 1 4.9212 -3.7840 -0.5689 15 6 1.6430 -2.7297 2.5421 16 7 0.3724 -2.4429 3.2127 17 6 -0.8736 -3.1816 2.9767 18 6 -1.9980 -2.2832 3.5382 19 1 -2.4088 -1.6401 2.7599 20 6 -3.0983 -3.1247 4.1876 21 6 -1.2380 -1.4527 4.5984 22 1 -1.6198 -0.4322 4.6290 23 6 -1.3542 -2.1081 5.9760 24 6 0.1996 -1.4734 4.1275 25 8 1.0690 -0.7227 4.5168 26 1 -0.3633 0.5843 -0.8454 27 1 -0.3633 0.4402 0.9287 28 1 -0.3634 -1.0242 -0.0831 29 1 1.8933 -0.5140 -0.8899 30 1 1.6768 1.9563 0.8899 31 1 3.1301 1.4423 -0.0005 32 1 1.6768 1.9563 -0.8900 33 1 3.1274 -0.6572 1.2873 34 1 1.6170 -0.2522 2.1376 35 1 3.5284 -2.6016 0.4224 36 1 2.3793 -3.9597 0.4800 37 1 2.9523 -3.2523 -4.1669 38 1 1.7745 -3.8085 2.4587 39 1 2.4634 -2.3075 3.1223 40 1 -1.0190 -3.3445 1.9087 41 1 -0.8524 -4.1354 3.5038 42 1 -2.6701 -3.7271 4.9888 43 1 -3.8648 -2.4669 4.5974 44 1 -3.5442 -3.7798 3.4391 45 1 -0.9274 -3.1104 5.9387 46 1 -0.8138 -1.5098 6.7096 47 1 -2.4043 -2.1707 6.2612 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839967003.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:13 Heat of formation + Delta-G solvation = -34.988033 kcal Electronic energy + Delta-G solvation = -24182.495804 eV Core-core repulsion = 20979.144494 eV Total energy + Delta-G solvation = -3203.351310 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.54901 -37.47487 -36.60645 -34.40881 -33.11936 -32.18563 -30.09591 -28.31409 -26.91428 -26.38080 -25.51131 -24.96393 -23.06795 -20.75644 -20.08431 -19.24775 -19.03010 -16.97205 -16.65883 -15.77106 -15.37703 -15.09649 -14.73000 -14.49556 -14.01605 -13.78645 -13.62640 -13.21753 -12.87715 -12.79488 -12.62539 -12.51441 -12.40245 -12.28960 -11.89880 -11.79684 -11.62621 -11.58398 -11.29366 -11.13970 -10.81126 -10.64437 -10.56887 -10.48935 -10.23214 -10.06033 -9.90793 -9.74597 -9.44448 -8.99554 -8.53095 -8.52489 -7.43966 -6.06940 -4.02670 2.79423 3.25149 3.28995 3.34025 3.35438 4.32557 4.39384 4.42095 4.69430 4.79049 4.93253 5.20901 5.22383 5.29896 5.36361 5.48682 5.54906 5.63580 5.65887 5.68317 5.77315 5.79135 5.84670 5.85788 5.94995 5.99641 6.07273 6.17421 6.21934 6.33416 6.36567 6.52408 6.61200 6.66646 6.68700 6.74519 6.87164 6.99052 7.20267 7.36592 7.50634 7.63956 7.88281 8.02111 8.43161 8.64597 9.03647 9.54312 11.04671 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018565 B = 0.005307 C = 0.004888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.877722 B = 5275.262219 C = 5726.658517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.112 4.112 3 C -0.142 4.142 4 C 0.080 3.920 5 N -0.538 5.538 6 C 0.163 3.837 7 C -0.506 4.506 8 H 0.096 0.904 9 C 0.070 3.930 10 N -0.897 5.897 11 Si 0.868 3.132 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.268 1.268 15 C 0.283 3.717 16 N -0.598 5.598 17 C 0.109 3.891 18 C -0.101 4.101 19 H 0.091 0.909 20 C -0.142 4.142 21 C -0.123 4.123 22 H 0.100 0.900 23 C -0.133 4.133 24 C 0.521 3.479 25 O -0.541 6.541 26 H 0.036 0.964 27 H 0.028 0.972 28 H 0.065 0.935 29 H 0.124 0.876 30 H 0.039 0.961 31 H 0.046 0.954 32 H 0.049 0.951 33 H 0.023 0.977 34 H 0.056 0.944 35 H -0.005 1.005 36 H 0.020 0.980 37 H 0.263 0.737 38 H 0.082 0.918 39 H 0.057 0.943 40 H 0.088 0.912 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.058 0.942 46 H 0.059 0.941 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.908 0.006 14.637 17.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.130 4.130 3 C -0.200 4.200 4 C -0.048 4.048 5 N -0.264 5.264 6 C 0.037 3.963 7 C -0.544 4.544 8 H 0.114 0.886 9 C -0.132 4.132 10 N -0.536 5.536 11 Si 0.696 3.304 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.193 1.193 15 C 0.072 3.928 16 N -0.332 5.332 17 C -0.014 4.014 18 C -0.120 4.120 19 H 0.109 0.891 20 C -0.200 4.200 21 C -0.144 4.144 22 H 0.118 0.882 23 C -0.191 4.191 24 C 0.308 3.692 25 O -0.418 6.418 26 H 0.055 0.945 27 H 0.047 0.953 28 H 0.084 0.916 29 H 0.141 0.859 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.042 0.958 34 H 0.074 0.926 35 H 0.013 0.987 36 H 0.038 0.962 37 H 0.073 0.927 38 H 0.100 0.900 39 H 0.075 0.925 40 H 0.107 0.893 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.775 0.301 14.424 16.886 hybrid contribution 1.671 -0.571 0.205 1.778 sum -7.104 -0.270 14.630 16.265 Atomic orbital electron populations 1.21549 0.95915 1.01827 0.98553 1.21568 0.95860 0.94188 1.01420 1.21804 1.00357 0.97490 1.00307 1.22013 0.96762 0.88179 0.97847 1.61587 1.55606 1.02593 1.06570 1.20279 0.90273 0.92605 0.93131 1.21183 1.14424 1.31578 0.87254 0.88607 1.24897 0.97131 0.96115 0.95083 1.69880 1.40168 1.45335 0.98259 0.86970 0.83776 0.81432 0.78217 1.20305 1.21275 1.19312 1.21809 0.83395 0.98713 0.88893 1.48410 1.11198 1.33690 1.39858 1.22117 0.82502 0.94289 1.02492 1.22190 0.95209 0.97229 0.97387 0.89090 1.21828 0.97624 0.99661 1.00847 1.21985 0.93941 1.01911 0.96611 0.88157 1.21679 1.02383 1.00606 0.94405 1.20799 0.90143 0.79402 0.78841 1.90686 1.48429 1.42425 1.60306 0.94497 0.95255 0.91573 0.85856 0.94196 0.93519 0.93216 0.95843 0.92575 0.98689 0.96194 0.92687 0.89980 0.92529 0.89346 0.91654 0.91865 0.92155 0.92069 0.92301 0.92168 0.91214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.28 8.69 37.16 0.32 -1.96 16 2 C -0.11 -2.26 2.45 -90.62 -0.22 -2.48 16 3 C -0.14 -2.50 9.19 37.16 0.34 -2.15 16 4 C 0.08 1.61 4.25 -3.83 -0.02 1.60 16 5 N -0.54 -10.81 4.02 -239.99 -0.97 -11.78 16 6 C 0.16 3.74 3.86 -4.98 -0.02 3.72 16 7 C -0.51 -13.38 7.74 -34.44 -0.27 -13.65 16 8 H 0.10 2.72 5.59 -52.49 -0.29 2.43 16 9 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 10 N -0.90 -26.38 13.96 55.43 0.77 -25.61 16 11 Si 0.87 20.78 27.57 -169.99 -4.69 16.09 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.27 -6.24 6.41 56.52 0.36 -5.88 16 15 C 0.28 4.92 5.79 -63.31 -0.37 4.55 16 16 N -0.60 -9.13 3.17 -175.90 -0.56 -9.69 16 17 C 0.11 1.32 6.91 -3.12 -0.02 1.30 16 18 C -0.10 -1.01 3.67 -88.99 -0.33 -1.34 16 19 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 20 C -0.14 -1.04 8.02 37.15 0.30 -0.74 16 21 C -0.12 -1.40 3.46 -90.63 -0.31 -1.72 16 22 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 23 C -0.13 -1.23 7.94 37.16 0.30 -0.93 16 24 C 0.52 8.26 6.83 -10.86 -0.07 8.18 16 25 O -0.54 -10.62 16.63 5.56 0.09 -10.52 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16 28 H 0.07 1.34 7.43 -51.93 -0.39 0.96 16 29 H 0.12 2.96 4.70 -51.93 -0.24 2.72 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.80 8.14 -51.92 -0.42 0.38 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.02 0.49 7.68 -51.93 -0.40 0.09 16 34 H 0.06 1.15 6.51 -51.93 -0.34 0.81 16 35 H 0.00 -0.11 6.40 -51.93 -0.33 -0.44 16 36 H 0.02 0.45 7.15 -51.93 -0.37 0.08 16 37 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.08 1.31 7.41 -51.93 -0.38 0.93 16 39 H 0.06 1.03 7.44 -51.93 -0.39 0.65 16 40 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.07 0.68 7.89 -51.93 -0.41 0.27 16 42 H 0.06 0.43 6.33 -51.93 -0.33 0.10 16 43 H 0.06 0.39 8.03 -51.93 -0.42 -0.03 16 44 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.54 7.74 -51.93 -0.40 0.14 16 46 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.07 0.49 6.83 -51.93 -0.35 0.14 16 LS Contribution 357.10 15.07 5.38 5.38 Total: -1.00 -30.25 357.10 -8.88 -39.13 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -8.45 Total: 0.79 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -0.47 Total: -3.79 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: -0.75 Total: -47.08 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.09 Total: -10.52 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.69 Total: 16.09 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.25 -8.88 -39.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839967003.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.140 kcal (2) G-P(sol) polarization free energy of solvation -30.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds