Wall clock time and date at job start Tue Mar 31 2020 05:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47250 * 2 1 4 4 C 1.53002 * 109.47378 * 120.00073 * 2 1 3 5 5 N 1.46903 * 109.47126 * 63.01868 * 4 2 1 6 6 C 1.46905 * 110.99657 * 195.40062 * 5 4 2 7 7 C 1.50697 * 109.47140 * 66.05036 * 6 5 4 8 8 H 1.08006 * 120.00250 * 359.72264 * 7 6 5 9 9 C 1.37880 * 120.00301 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99211 * 359.72393 * 9 7 6 11 11 Si 1.86793 * 120.00189 * 179.72419 * 9 7 6 12 12 H 1.48500 * 109.47277 * 359.97438 * 11 9 7 13 13 H 1.48508 * 109.47200 * 120.00102 * 11 9 7 14 14 H 1.48496 * 109.47240 * 239.99861 * 11 9 7 15 15 C 1.46894 * 110.99791 * 71.45089 * 5 4 2 16 16 N 1.46503 * 109.47072 * 208.25728 * 15 5 4 17 17 C 1.46766 * 124.34720 * 80.35545 * 16 15 5 18 18 C 1.54480 * 105.47261 * 197.01846 * 17 16 15 19 19 H 1.08997 * 110.97069 * 216.46511 * 18 17 16 20 20 C 1.52999 * 110.97144 * 92.69942 * 18 17 16 21 21 C 1.54633 * 101.76490 * 334.58264 * 18 17 16 22 22 H 1.08996 * 110.48526 * 143.60771 * 21 18 17 23 23 C 1.53004 * 110.48789 * 266.12122 * 21 18 17 24 24 C 1.34413 * 124.35126 * 260.05811 * 16 15 5 25 25 O 1.21285 * 124.94217 * 359.56860 * 24 16 15 26 26 H 1.09003 * 109.46909 * 55.60411 * 1 2 3 27 27 H 1.09002 * 109.46898 * 175.60075 * 1 2 3 28 28 H 1.08995 * 109.46926 * 295.60098 * 1 2 3 29 29 H 1.09001 * 109.47119 * 239.99620 * 2 1 3 30 30 H 1.09004 * 109.47260 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47038 * 299.99864 * 3 2 1 32 32 H 1.09001 * 109.47370 * 59.99774 * 3 2 1 33 33 H 1.09004 * 109.46938 * 303.02326 * 4 2 1 34 34 H 1.09000 * 109.47235 * 183.02447 * 4 2 1 35 35 H 1.08998 * 109.47415 * 306.04405 * 6 5 4 36 36 H 1.08997 * 109.46517 * 186.04601 * 6 5 4 37 37 H 0.97004 * 119.99288 * 180.02562 * 10 9 7 38 38 H 1.09004 * 109.47513 * 328.25487 * 15 5 4 39 39 H 1.09000 * 109.47462 * 88.25435 * 15 5 4 40 40 H 1.08997 * 110.24471 * 316.01703 * 17 16 15 41 41 H 1.08995 * 110.24841 * 77.92798 * 17 16 15 42 42 H 1.09003 * 109.46852 * 66.23338 * 20 18 17 43 43 H 1.08997 * 109.47179 * 186.23163 * 20 18 17 44 44 H 1.08999 * 109.47210 * 306.24015 * 20 18 17 45 45 H 1.09008 * 109.46757 * 59.99589 * 23 21 18 46 46 H 1.08993 * 109.46920 * 179.97438 * 23 21 18 47 47 H 1.08995 * 109.46589 * 300.00260 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6109 -2.1257 1.2133 6 6 1.7552 -2.7542 2.5333 7 6 0.7975 -2.1114 3.5031 8 1 0.1498 -1.3125 3.1732 9 6 0.7516 -2.5395 4.8129 10 7 1.5400 -3.5125 5.2145 11 14 -0.4300 -1.7375 6.0169 12 1 -1.2004 -0.6754 5.3214 13 1 -1.3657 -2.7609 6.5484 14 1 0.3369 -1.1381 7.1384 15 6 2.3501 -2.8760 0.1894 16 7 1.5221 -3.9816 -0.2989 17 6 0.4543 -3.8390 -1.2957 18 6 -0.3999 -5.1200 -1.1708 19 1 -0.7596 -5.4457 -2.1468 20 6 -1.5655 -4.9087 -0.2025 21 6 0.6231 -6.1261 -0.5941 22 1 0.1391 -6.7984 0.1143 23 6 1.2842 -6.9228 -1.7207 24 6 1.6464 -5.2578 0.1043 25 8 2.4591 -5.6550 0.9122 26 1 -0.3633 0.5806 -0.8480 27 1 -0.3633 -1.0247 -0.0788 28 1 -0.3633 0.4440 0.9267 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6331 -0.2397 2.1384 34 1 3.1287 -0.6745 1.2767 35 1 2.7768 -2.6212 2.8893 36 1 1.5333 -3.8185 2.4551 37 1 1.5075 -3.8140 6.1359 38 1 2.5966 -2.2129 -0.6399 39 1 3.2683 -3.2733 0.6221 40 1 -0.1509 -2.9593 -1.0768 41 1 0.8800 -3.7639 -2.2963 42 1 -2.2578 -4.1784 -0.6213 43 1 -2.0849 -5.8543 -0.0473 44 1 -1.1842 -4.5428 0.7508 45 1 1.8008 -6.2392 -2.3944 46 1 2.0012 -7.6255 -1.2964 47 1 0.5215 -7.4709 -2.2739 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839967007.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:18 Heat of formation + Delta-G solvation = -45.795199 kcal Electronic energy + Delta-G solvation = -24252.549359 eV Core-core repulsion = 21048.729415 eV Total energy + Delta-G solvation = -3203.819944 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.30689 -37.43031 -36.23981 -34.31258 -33.09625 -31.87730 -30.45811 -27.49387 -26.79877 -26.48410 -25.72375 -24.32238 -23.15725 -20.94549 -20.35306 -19.44104 -18.82682 -16.46802 -16.25603 -15.63381 -15.13280 -15.01462 -14.56370 -14.15917 -13.97051 -13.82265 -13.57304 -13.19297 -13.11112 -12.72142 -12.53167 -12.31429 -12.08910 -12.04303 -11.89170 -11.83344 -11.59131 -11.26047 -11.20224 -11.01466 -10.81520 -10.75669 -10.65180 -10.58795 -10.47184 -10.30639 -9.98698 -9.71126 -9.16709 -9.14213 -8.41936 -8.25260 -7.27160 -5.94268 -3.96707 3.09283 3.32953 3.40355 3.44091 3.52664 4.45905 4.50369 4.60895 4.89121 4.94859 5.13066 5.24960 5.36314 5.38883 5.40317 5.49760 5.53401 5.54991 5.64244 5.73775 5.79318 5.87344 5.94563 5.97260 6.01108 6.03727 6.08125 6.11275 6.14484 6.23127 6.25588 6.37258 6.43773 6.52433 6.56604 6.83782 6.86827 6.94780 7.40414 7.44299 7.65253 7.85726 8.16393 8.24752 8.57356 8.75303 9.11192 9.66552 11.15842 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.011861 B = 0.007002 C = 0.005348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.136792 B = 3998.137655 C = 5234.366498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.093 4.093 3 C -0.145 4.145 4 C 0.071 3.929 5 N -0.546 5.546 6 C 0.197 3.803 7 C -0.506 4.506 8 H 0.062 0.938 9 C 0.055 3.945 10 N -0.892 5.892 11 Si 0.893 3.107 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.286 1.286 15 C 0.285 3.715 16 N -0.599 5.599 17 C 0.112 3.888 18 C -0.098 4.098 19 H 0.090 0.910 20 C -0.146 4.146 21 C -0.125 4.125 22 H 0.102 0.898 23 C -0.131 4.131 24 C 0.522 3.478 25 O -0.526 6.526 26 H 0.035 0.965 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.089 0.911 34 H 0.019 0.981 35 H -0.012 1.012 36 H 0.037 0.963 37 H 0.259 0.741 38 H 0.073 0.927 39 H 0.056 0.944 40 H 0.083 0.917 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.055 0.945 44 H 0.070 0.930 45 H 0.056 0.944 46 H 0.062 0.938 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.186 1.131 -16.773 17.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.112 4.112 3 C -0.203 4.203 4 C -0.058 4.058 5 N -0.272 5.272 6 C 0.073 3.927 7 C -0.545 4.545 8 H 0.081 0.919 9 C -0.146 4.146 10 N -0.531 5.531 11 Si 0.721 3.279 12 H -0.197 1.197 13 H -0.211 1.211 14 H -0.212 1.212 15 C 0.074 3.926 16 N -0.334 5.334 17 C -0.012 4.012 18 C -0.117 4.117 19 H 0.108 0.892 20 C -0.203 4.203 21 C -0.146 4.146 22 H 0.120 0.880 23 C -0.189 4.189 24 C 0.309 3.691 25 O -0.401 6.401 26 H 0.054 0.946 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.108 0.892 34 H 0.037 0.963 35 H 0.006 0.994 36 H 0.055 0.945 37 H 0.069 0.931 38 H 0.091 0.909 39 H 0.074 0.926 40 H 0.101 0.899 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.089 0.911 45 H 0.075 0.925 46 H 0.081 0.919 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.136 0.871 -16.263 16.585 hybrid contribution 0.171 0.421 1.077 1.169 sum -2.965 1.291 -15.186 15.527 Atomic orbital electron populations 1.21649 0.94748 1.02127 1.00255 1.21173 0.96786 0.94976 0.98280 1.21807 1.00466 0.96633 1.01354 1.22020 0.96346 0.89174 0.98267 1.61852 1.55365 1.01351 1.08606 1.19734 0.95240 0.95381 0.82382 1.21161 1.20789 1.18961 0.93560 0.91941 1.24999 0.96001 0.95250 0.98370 1.70012 1.38485 1.27662 1.16968 0.86525 0.80964 0.79261 0.81140 1.19750 1.21125 1.21195 1.21713 0.89789 0.86655 0.94454 1.48227 1.36076 1.07615 1.41447 1.22042 0.89015 0.98946 0.91186 1.22207 0.95089 0.94420 0.99991 0.89217 1.21804 0.96771 1.01507 1.00201 1.22051 0.96108 0.97467 0.98998 0.87953 1.21595 1.00687 0.99623 0.96973 1.20708 0.84306 0.83210 0.80926 1.90746 1.39023 1.77072 1.33251 0.94558 0.91622 0.92953 0.92376 0.93238 0.93245 0.92625 0.89243 0.96289 0.99449 0.94535 0.93085 0.90873 0.92590 0.89877 0.92142 0.92261 0.92604 0.91117 0.92500 0.91917 0.91741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.89 9.01 37.16 0.33 -1.56 16 2 C -0.09 -1.35 2.90 -90.62 -0.26 -1.61 16 3 C -0.14 -1.80 9.19 37.16 0.34 -1.46 16 4 C 0.07 1.30 4.17 -3.82 -0.02 1.29 16 5 N -0.55 -11.34 4.00 -239.98 -0.96 -12.30 16 6 C 0.20 5.29 4.56 -4.97 -0.02 5.27 16 7 C -0.51 -14.28 8.30 -34.44 -0.29 -14.57 16 8 H 0.06 1.73 7.24 -52.48 -0.38 1.35 16 9 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 10 N -0.89 -27.62 13.29 55.43 0.74 -26.88 16 11 Si 0.89 22.02 29.54 -169.99 -5.02 16.99 16 12 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 15 C 0.29 5.26 5.65 -63.32 -0.36 4.90 16 16 N -0.60 -10.25 3.17 -175.91 -0.56 -10.81 16 17 C 0.11 1.43 6.90 -3.12 -0.02 1.41 16 18 C -0.10 -1.14 3.28 -88.99 -0.29 -1.43 16 19 H 0.09 0.79 7.90 -51.93 -0.41 0.38 16 20 C -0.15 -1.84 9.12 37.16 0.34 -1.51 16 21 C -0.12 -1.74 3.09 -90.62 -0.28 -2.02 16 22 H 0.10 1.48 7.91 -51.93 -0.41 1.06 16 23 C -0.13 -1.45 9.16 37.16 0.34 -1.11 16 24 C 0.52 9.94 6.82 -10.86 -0.07 9.87 16 25 O -0.53 -12.68 16.93 5.55 0.09 -12.58 16 26 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 1.03 7.02 -51.93 -0.36 0.67 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.79 6.48 -51.93 -0.34 0.46 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 1.87 6.58 -51.93 -0.34 1.53 16 34 H 0.02 0.35 8.06 -51.93 -0.42 -0.07 16 35 H -0.01 -0.36 8.12 -51.93 -0.42 -0.79 16 36 H 0.04 1.11 7.00 -51.93 -0.36 0.75 16 37 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 38 H 0.07 1.12 6.14 -51.93 -0.32 0.81 16 39 H 0.06 1.18 7.45 -51.93 -0.39 0.79 16 40 H 0.08 1.10 7.10 -51.93 -0.37 0.73 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 45 H 0.06 0.60 8.14 -51.92 -0.42 0.17 16 46 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 368.89 15.07 5.56 5.56 Total: -1.00 -33.20 368.89 -9.24 -42.43 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -8.73 Total: -1.39 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -0.36 Total: -1.01 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: -0.78 Total: -50.00 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.09 Total: -12.58 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.20 -9.24 -42.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839967007.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.361 kcal (2) G-P(sol) polarization free energy of solvation -33.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds