Wall clock time and date at job start Tue Mar 31 2020 05:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47112 * 2 1 4 4 C 1.53002 * 109.46877 * 239.99859 * 2 1 3 5 5 N 1.46903 * 109.47142 * 219.40851 * 4 2 1 6 6 C 1.46900 * 110.99881 * 65.97294 * 5 4 2 7 7 C 1.50701 * 109.46994 * 69.56416 * 6 5 4 8 8 H 1.07998 * 119.99887 * 5.04659 * 7 6 5 9 9 C 1.37877 * 120.00322 * 185.04806 * 7 6 5 10 10 N 1.31517 * 119.99367 * 0.02562 * 9 7 6 11 11 Si 1.86791 * 120.00318 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47290 * 90.00040 * 11 9 7 13 13 H 1.48499 * 109.47245 * 210.00111 * 11 9 7 14 14 H 1.48498 * 109.47080 * 330.00296 * 11 9 7 15 15 C 1.46905 * 110.99848 * 302.02187 * 5 4 2 16 16 N 1.46492 * 109.46968 * 277.08856 * 15 5 4 17 17 C 1.46762 * 124.35352 * 90.00127 * 16 15 5 18 18 C 1.54484 * 105.47677 * 197.01469 * 17 16 15 19 19 H 1.08995 * 110.96994 * 216.46650 * 18 17 16 20 20 C 1.52997 * 110.96840 * 92.69967 * 18 17 16 21 21 C 1.54630 * 101.76085 * 334.58118 * 18 17 16 22 22 H 1.08992 * 110.48877 * 266.11657 * 21 18 17 23 23 C 1.53010 * 110.48049 * 143.47461 * 21 18 17 24 24 C 1.34426 * 124.34911 * 269.69662 * 16 15 5 25 25 O 1.21282 * 124.94027 * 359.57614 * 24 16 15 26 26 H 1.09001 * 109.47546 * 59.99987 * 1 2 3 27 27 H 1.09005 * 109.47377 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46905 * 300.00033 * 1 2 3 29 29 H 1.09006 * 109.47189 * 120.00327 * 2 1 3 30 30 H 1.09001 * 109.46722 * 160.89552 * 3 2 1 31 31 H 1.08997 * 109.47121 * 280.89129 * 3 2 1 32 32 H 1.08993 * 109.47231 * 40.89545 * 3 2 1 33 33 H 1.08999 * 109.47218 * 339.40835 * 4 2 1 34 34 H 1.08998 * 109.47050 * 99.40926 * 4 2 1 35 35 H 1.08999 * 109.46892 * 189.56115 * 6 5 4 36 36 H 1.08991 * 109.47310 * 309.56029 * 6 5 4 37 37 H 0.96999 * 119.99739 * 179.97438 * 10 9 7 38 38 H 1.09005 * 109.46654 * 37.08859 * 15 5 4 39 39 H 1.09001 * 109.47115 * 157.08781 * 15 5 4 40 40 H 1.08996 * 110.24424 * 316.01627 * 17 16 15 41 41 H 1.08999 * 110.24678 * 77.92737 * 17 16 15 42 42 H 1.09000 * 109.46736 * 61.45795 * 20 18 17 43 43 H 1.08995 * 109.46910 * 181.45248 * 20 18 17 44 44 H 1.09000 * 109.47180 * 301.45709 * 20 18 17 45 45 H 1.08997 * 109.47107 * 60.00231 * 23 21 18 46 46 H 1.08996 * 109.46571 * 179.97438 * 23 21 18 47 47 H 1.08992 * 109.47124 * 299.99940 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 3.2120 -1.5353 -0.9006 6 6 2.8424 -2.6278 0.0093 7 6 2.0065 -3.6385 -0.7329 8 1 1.8411 -3.5274 -1.7944 9 6 1.4528 -4.7050 -0.0569 10 7 1.6538 -4.8399 1.2358 11 14 0.4161 -5.9573 -0.9767 12 1 1.2886 -7.0489 -1.4793 13 1 -0.6059 -6.5230 -0.0599 14 1 -0.2585 -5.2957 -2.1223 15 6 4.2761 -0.7047 -0.3209 16 7 5.0495 -0.0808 -1.3973 17 6 4.7369 1.2237 -1.9929 18 6 5.5134 1.2640 -3.3278 19 1 5.8900 2.2667 -3.5298 20 6 4.6427 0.7653 -4.4829 21 6 6.6749 0.2828 -3.0466 22 1 7.5517 0.8222 -2.6887 23 6 7.0146 -0.5193 -4.3046 24 6 6.1402 -0.6268 -1.9624 25 8 6.6235 -1.6944 -1.6503 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.0766 1.4613 0.3364 31 1 1.9780 1.8497 -1.0091 32 1 1.4287 2.0439 0.6727 33 1 1.2540 -1.3659 -1.6429 34 1 2.3194 0.0134 -2.0043 35 1 3.7455 -3.1089 0.3850 36 1 2.2699 -2.2264 0.8453 37 1 1.2640 -5.5900 1.7115 38 1 3.8323 0.0703 0.3040 39 1 4.9339 -1.3277 0.2851 40 1 3.6659 1.3073 -2.1768 41 1 5.0703 2.0276 -1.3367 42 1 3.7733 1.4141 -4.5888 43 1 5.2214 0.7797 -5.4064 44 1 4.3133 -0.2529 -4.2762 45 1 7.3120 0.1627 -5.1011 46 1 7.8343 -1.2043 -4.0883 47 1 6.1397 -1.0873 -4.6205 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839967008.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:20 Heat of formation + Delta-G solvation = -33.644944 kcal Electronic energy + Delta-G solvation = -24310.639801 eV Core-core repulsion = 21107.346731 eV Total energy + Delta-G solvation = -3203.293069 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.48120 -37.92725 -36.34890 -34.08907 -33.34705 -31.96277 -29.91773 -27.96097 -26.95273 -26.73848 -25.30905 -24.89085 -23.13128 -21.29833 -20.18851 -19.45026 -18.69057 -16.59366 -16.25523 -15.94354 -15.68799 -14.80772 -14.64694 -14.47939 -14.20379 -13.70912 -13.54654 -13.28087 -13.10434 -12.92142 -12.64900 -12.37567 -12.24101 -12.01862 -11.91503 -11.77985 -11.38357 -11.24725 -11.10765 -11.00529 -10.89910 -10.83582 -10.70079 -10.62411 -10.53000 -10.25682 -10.08893 -9.81362 -9.33734 -9.17799 -8.44942 -8.33354 -7.19475 -5.99057 -3.99587 2.99130 3.34332 3.40349 3.42269 3.45180 4.38158 4.45375 4.46684 4.72743 4.96221 5.08191 5.24381 5.30135 5.34280 5.36694 5.36819 5.37875 5.47295 5.52946 5.56982 5.68658 5.76768 5.83393 5.88278 5.90884 5.98233 6.04413 6.08024 6.09526 6.17216 6.21795 6.26748 6.36654 6.41842 6.57135 6.74247 6.88566 6.92730 7.26182 7.36763 7.56803 7.84275 8.11822 8.21685 8.53397 8.67233 9.07459 9.63936 11.11345 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015651 B = 0.005779 C = 0.004900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.561915 B = 4844.328745 C = 5713.077418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.137 4.137 3 C -0.148 4.148 4 C 0.071 3.929 5 N -0.544 5.544 6 C 0.195 3.805 7 C -0.500 4.500 8 H 0.061 0.939 9 C 0.056 3.944 10 N -0.899 5.899 11 Si 0.896 3.104 12 H -0.281 1.281 13 H -0.288 1.288 14 H -0.274 1.274 15 C 0.276 3.724 16 N -0.603 5.603 17 C 0.102 3.898 18 C -0.099 4.099 19 H 0.090 0.910 20 C -0.145 4.145 21 C -0.123 4.123 22 H 0.100 0.900 23 C -0.133 4.133 24 C 0.523 3.477 25 O -0.525 6.525 26 H 0.046 0.954 27 H 0.063 0.937 28 H 0.043 0.957 29 H 0.078 0.922 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.082 0.918 34 H 0.052 0.948 35 H 0.026 0.974 36 H 0.005 0.995 37 H 0.260 0.740 38 H 0.063 0.937 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.064 0.936 42 H 0.056 0.944 43 H 0.060 0.940 44 H 0.065 0.935 45 H 0.060 0.940 46 H 0.061 0.939 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.466 17.005 -7.404 19.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.157 4.157 3 C -0.205 4.205 4 C -0.058 4.058 5 N -0.269 5.269 6 C 0.071 3.929 7 C -0.539 4.539 8 H 0.079 0.921 9 C -0.145 4.145 10 N -0.538 5.538 11 Si 0.724 3.276 12 H -0.207 1.207 13 H -0.214 1.214 14 H -0.199 1.199 15 C 0.065 3.935 16 N -0.338 5.338 17 C -0.022 4.022 18 C -0.118 4.118 19 H 0.109 0.891 20 C -0.202 4.202 21 C -0.145 4.145 22 H 0.118 0.882 23 C -0.190 4.190 24 C 0.309 3.691 25 O -0.400 6.400 26 H 0.065 0.935 27 H 0.082 0.918 28 H 0.062 0.938 29 H 0.096 0.904 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.101 0.899 34 H 0.071 0.929 35 H 0.044 0.956 36 H 0.023 0.977 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.815 16.042 -7.436 18.325 hybrid contribution -0.981 -0.335 0.410 1.114 sum 3.834 15.707 -7.026 17.629 Atomic orbital electron populations 1.21771 0.95240 1.02272 1.00210 1.21873 0.96546 0.95647 1.01640 1.22193 1.00379 0.96837 1.01080 1.22289 0.93573 0.95293 0.94613 1.61964 1.07777 1.10932 1.46218 1.19752 0.95916 0.87080 0.90202 1.21087 1.29954 1.07648 0.95200 0.92065 1.24953 0.96755 0.97966 0.94833 1.69953 1.45481 1.30851 1.07555 0.86537 0.79953 0.81659 0.79486 1.20682 1.21379 1.19935 1.22052 0.91435 0.94405 0.85627 1.48410 1.27970 1.19229 1.38156 1.22250 1.00885 0.85576 0.93505 1.22183 0.95228 0.99324 0.95070 0.89144 1.21851 0.99000 1.02255 0.97074 1.21979 0.98861 0.97037 0.96589 0.88183 1.21640 1.02539 0.99625 0.95224 1.20702 0.80478 0.85606 0.82337 1.90718 1.62429 1.21613 1.65236 0.93472 0.91797 0.93794 0.90427 0.92888 0.92975 0.93298 0.89933 0.92920 0.95568 0.97706 0.92999 0.91959 0.89799 0.90173 0.91791 0.92452 0.92082 0.91590 0.92091 0.91950 0.91686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 8.86 37.16 0.33 -1.78 16 2 C -0.14 -2.21 2.12 -90.62 -0.19 -2.41 16 3 C -0.15 -1.86 8.34 37.16 0.31 -1.55 16 4 C 0.07 1.29 5.17 -3.82 -0.02 1.27 16 5 N -0.54 -11.59 4.77 -239.98 -1.15 -12.73 16 6 C 0.20 5.05 4.50 -4.98 -0.02 5.03 16 7 C -0.50 -14.09 8.38 -34.44 -0.29 -14.38 16 8 H 0.06 1.74 7.56 -52.49 -0.40 1.34 16 9 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 10 N -0.90 -26.76 13.29 55.43 0.74 -26.03 16 11 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 15 C 0.28 5.08 5.43 -63.32 -0.34 4.73 16 16 N -0.60 -9.58 3.17 -175.91 -0.56 -10.13 16 17 C 0.10 1.15 6.54 -3.12 -0.02 1.13 16 18 C -0.10 -0.97 3.66 -88.99 -0.33 -1.29 16 19 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 20 C -0.14 -1.44 7.89 37.16 0.29 -1.15 16 21 C -0.12 -1.48 3.43 -90.62 -0.31 -1.80 16 22 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 23 C -0.13 -1.53 7.99 37.16 0.30 -1.23 16 24 C 0.52 9.07 7.46 -10.86 -0.08 8.99 16 25 O -0.52 -11.69 17.43 5.56 0.10 -11.60 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 1.13 8.13 -51.93 -0.42 0.71 16 28 H 0.04 0.61 8.13 -51.93 -0.42 0.19 16 29 H 0.08 1.47 5.55 -51.93 -0.29 1.18 16 30 H 0.05 0.65 5.76 -51.93 -0.30 0.35 16 31 H 0.05 0.59 6.75 -51.93 -0.35 0.24 16 32 H 0.05 0.57 7.99 -51.93 -0.41 0.15 16 33 H 0.08 1.71 6.65 -51.93 -0.35 1.36 16 34 H 0.05 0.85 5.37 -51.93 -0.28 0.57 16 35 H 0.03 0.75 7.69 -51.93 -0.40 0.36 16 36 H 0.01 0.14 6.07 -51.93 -0.32 -0.17 16 37 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 38 H 0.06 1.02 3.78 -51.93 -0.20 0.82 16 39 H 0.08 1.75 7.32 -51.93 -0.38 1.37 16 40 H 0.08 0.91 4.63 -51.93 -0.24 0.67 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.52 7.17 -51.93 -0.37 0.15 16 44 H 0.07 0.86 7.50 -51.93 -0.39 0.47 16 45 H 0.06 0.53 7.86 -51.93 -0.41 0.12 16 46 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.06 0.84 6.63 -51.93 -0.34 0.49 16 LS Contribution 352.45 15.07 5.31 5.31 Total: -1.00 -32.33 352.45 -8.99 -41.32 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -7.93 Total: -0.18 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -0.47 Total: -2.93 kcal Atomic # 7 Polarization: -47.93 SS G_CDS: -0.97 Total: -48.89 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.10 Total: -11.60 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.33 -8.99 -41.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839967008.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.675 kcal (2) G-P(sol) polarization free energy of solvation -32.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds