Wall clock time and date at job start Tue Mar 31 2020 05:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47036 * 2 1 4 4 C 1.52996 * 109.47270 * 239.99745 * 2 1 3 5 5 N 1.46499 * 109.47198 * 64.99984 * 4 2 1 6 6 C 1.46499 * 120.00136 * 270.00278 * 5 4 2 7 7 C 1.34784 * 119.99893 * 90.00083 * 5 4 2 8 8 O 1.21588 * 119.99858 * 359.97438 * 7 5 4 9 9 N 1.34773 * 119.99935 * 179.72905 * 7 5 4 10 10 C 1.46496 * 119.99973 * 180.02562 * 9 7 5 11 11 C 1.50703 * 109.47316 * 179.97438 * 10 9 7 12 12 H 1.08002 * 119.99971 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00060 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00031 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00108 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46864 * 60.00209 * 15 13 11 17 17 H 1.48496 * 109.47475 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47151 * 300.00620 * 15 13 11 19 19 C 1.53004 * 109.46838 * 120.00097 * 2 1 3 20 20 C 1.52996 * 109.46903 * 299.99873 * 19 2 1 21 21 C 1.52999 * 109.47265 * 180.02562 * 20 19 2 22 22 C 1.53001 * 109.47484 * 59.99741 * 21 20 19 23 23 C 1.52999 * 109.46785 * 300.00585 * 22 21 20 24 24 C 1.53001 * 109.46838 * 180.02562 * 19 2 1 25 25 H 1.08999 * 109.47162 * 300.00027 * 1 2 3 26 26 H 1.09003 * 109.47184 * 60.00197 * 1 2 3 27 27 H 1.08996 * 109.47036 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47172 * 305.00221 * 4 2 1 29 29 H 1.08998 * 109.47554 * 185.00217 * 4 2 1 30 30 H 1.08999 * 109.47256 * 269.99572 * 6 5 4 31 31 H 1.08998 * 109.47416 * 29.99674 * 6 5 4 32 32 H 1.09008 * 109.47058 * 150.00274 * 6 5 4 33 33 H 0.97004 * 120.00018 * 359.97438 * 9 7 5 34 34 H 1.09007 * 109.47081 * 299.99672 * 10 9 7 35 35 H 1.08997 * 109.47795 * 59.99548 * 10 9 7 36 36 H 0.97003 * 120.00435 * 179.97438 * 14 13 11 37 37 H 1.08996 * 109.47386 * 60.00118 * 19 2 1 38 38 H 1.09005 * 109.47206 * 299.99698 * 20 19 2 39 39 H 1.08998 * 109.47764 * 60.00313 * 20 19 2 40 40 H 1.09005 * 109.46971 * 299.99901 * 21 20 19 41 41 H 1.08999 * 109.47506 * 180.02562 * 21 20 19 42 42 H 1.08994 * 109.47518 * 180.02562 * 22 21 20 43 43 H 1.09005 * 109.46886 * 60.00108 * 22 21 20 44 44 H 1.08996 * 109.47273 * 299.99372 * 23 22 21 45 45 H 1.09011 * 109.47161 * 179.97438 * 23 22 21 46 46 H 1.08999 * 109.47162 * 299.99877 * 24 19 2 47 47 H 1.08996 * 109.47036 * 59.99903 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6525 0.0352 -2.4423 6 6 0.3746 -0.2424 -3.1028 7 6 2.4716 0.9868 -2.9325 8 8 3.5320 1.2176 -2.3841 9 7 2.1176 1.6790 -4.0333 10 6 3.0082 2.7128 -4.5664 11 6 2.3842 3.3307 -5.7912 12 1 1.4208 2.9873 -6.1381 13 6 3.0433 4.3344 -6.4689 14 7 4.2166 4.7523 -6.0468 15 14 2.2702 5.0997 -7.9874 16 1 0.9651 5.7086 -7.6250 17 1 3.1728 6.1478 -8.5277 18 1 2.0581 4.0509 -9.0170 19 6 2.0399 -0.7213 1.2493 20 6 1.5299 0.0000 2.4984 21 6 2.0403 -0.7209 3.7477 22 6 3.5703 -0.7205 3.7476 23 6 4.0803 -1.4417 2.4983 24 6 3.5700 -0.7207 1.2496 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6054 -1.7198 -1.2951 29 1 3.1263 -0.7996 -1.2055 30 1 0.5171 -1.0128 -3.8606 31 1 -0.3484 -0.5887 -2.3642 32 1 0.0044 0.6676 -3.5750 33 1 1.2734 1.4921 -4.4731 34 1 3.1649 3.4825 -3.8105 35 1 3.9656 2.2655 -4.8333 36 1 4.6805 5.4581 -6.5237 37 1 1.6766 -1.7489 1.2493 38 1 1.8934 1.0277 2.4985 39 1 0.4399 0.0000 2.4985 40 1 1.6773 -1.7487 3.7480 41 1 1.6766 -0.2073 4.6377 42 1 3.9340 -1.2344 4.6373 43 1 3.9334 0.3073 3.7473 44 1 3.7173 -2.4695 2.4985 45 1 5.1704 -1.4411 2.4979 46 1 3.9337 -1.2343 0.3596 47 1 3.9329 0.3070 1.2498 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875539773.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:59 Heat of formation + Delta-G solvation = -63.147423 kcal Electronic energy + Delta-G solvation = -23055.470385 eV Core-core repulsion = 19850.897992 eV Total energy + Delta-G solvation = -3204.572393 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.84091 -38.76819 -35.88002 -34.15659 -33.55961 -32.12794 -30.94467 -29.12370 -27.80093 -27.10984 -25.12477 -23.28341 -22.51721 -22.00131 -20.17735 -19.77695 -19.14730 -17.74925 -16.22324 -15.97447 -15.51844 -15.13735 -14.75191 -14.56249 -14.20721 -13.88115 -13.69947 -13.51936 -13.25387 -13.03494 -12.76100 -12.61254 -12.36800 -12.29541 -11.90046 -11.74797 -11.70763 -11.42716 -11.18042 -11.14183 -10.98552 -10.94204 -10.84154 -10.63238 -10.41432 -10.25797 -10.06693 -9.89985 -9.34885 -9.26174 -8.68777 -8.27537 -7.66080 -6.12232 -4.18740 3.27418 3.28406 3.32643 3.36289 3.98670 4.34149 4.56855 4.61364 4.68516 4.83584 4.99043 5.06177 5.19338 5.23573 5.26995 5.28434 5.29565 5.40999 5.46842 5.50793 5.55334 5.59224 5.61138 5.72907 5.80595 5.85267 5.90477 5.95285 5.99581 6.08832 6.12503 6.14164 6.15597 6.24767 6.34828 6.44020 6.55770 6.90503 7.21362 7.56246 7.59977 7.61950 7.91187 8.06411 8.80008 8.96915 9.38273 9.53058 10.98020 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028830 B = 0.003223 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.983678 B = 8685.896299 C = 9129.987749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.105 4.105 3 H 0.077 0.923 4 C 0.139 3.861 5 N -0.641 5.641 6 C 0.078 3.922 7 C 0.694 3.306 8 O -0.598 6.598 9 N -0.730 5.730 10 C 0.267 3.733 11 C -0.542 4.542 12 H 0.061 0.939 13 C 0.064 3.936 14 N -0.886 5.886 15 Si 0.903 3.097 16 H -0.276 1.276 17 H -0.285 1.285 18 H -0.276 1.276 19 C -0.075 4.075 20 C -0.115 4.115 21 C -0.118 4.118 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.119 4.119 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.386 0.614 34 H 0.023 0.977 35 H 0.024 0.976 36 H 0.266 0.734 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.059 0.941 46 H 0.066 0.934 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.137 -13.712 15.915 22.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.125 4.125 3 H 0.095 0.905 4 C 0.016 3.984 5 N -0.380 5.380 6 C -0.066 4.066 7 C 0.395 3.605 8 O -0.477 6.477 9 N -0.384 5.384 10 C 0.146 3.854 11 C -0.580 4.580 12 H 0.079 0.921 13 C -0.140 4.140 14 N -0.523 5.523 15 Si 0.731 3.269 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.201 1.201 19 C -0.094 4.094 20 C -0.153 4.153 21 C -0.155 4.155 22 C -0.158 4.158 23 C -0.156 4.156 24 C -0.156 4.156 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.103 0.897 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.220 0.780 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.085 0.915 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.173 -13.361 16.226 22.210 hybrid contribution -0.851 0.419 -1.095 1.449 sum -8.025 -12.942 15.132 21.468 Atomic orbital electron populations 1.21972 0.95611 1.01147 1.01830 1.21610 0.95615 1.01080 0.94189 0.90489 1.21323 1.01357 0.92957 0.82809 1.47036 1.20259 1.40182 1.30474 1.21758 0.85914 1.01244 0.97647 1.16109 0.83493 0.79412 0.81507 1.90855 1.23920 1.70356 1.62535 1.45849 1.24386 1.40304 1.27810 1.18950 0.88988 0.84387 0.93092 1.21190 1.05371 1.20223 1.11219 0.92114 1.24939 0.94830 0.96388 0.97836 1.69970 1.13721 1.28581 1.40036 0.86483 0.79029 0.78899 0.82527 1.20105 1.21078 1.20105 1.21096 0.95415 0.99120 0.93791 1.21633 1.00203 0.99551 0.93890 1.21524 0.95740 1.00503 0.97775 1.21544 0.95719 1.00851 0.97672 1.21528 1.00126 0.99143 0.94807 1.21655 0.95006 1.01453 0.97494 0.92756 0.92276 0.93128 0.91586 0.89663 0.93321 0.91094 0.91467 0.78048 0.95850 0.95827 0.92433 0.91500 0.91977 0.91885 0.92282 0.92422 0.92520 0.92024 0.92323 0.92205 0.91501 0.91568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 7.83 37.16 0.29 -1.25 16 2 C -0.11 -1.29 2.18 -90.62 -0.20 -1.48 16 3 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 4 C 0.14 1.88 4.68 -4.04 -0.02 1.87 16 5 N -0.64 -10.16 2.70 -187.35 -0.51 -10.67 16 6 C 0.08 0.94 9.27 59.85 0.55 1.49 16 7 C 0.69 14.87 8.28 -86.91 -0.72 14.15 16 8 O -0.60 -15.17 15.92 5.29 0.08 -15.08 16 9 N -0.73 -16.26 5.41 -66.41 -0.36 -16.62 16 10 C 0.27 7.32 5.43 -5.19 -0.03 7.29 16 11 C -0.54 -14.99 9.28 -34.44 -0.32 -15.31 16 12 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 13 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 14 N -0.89 -26.48 13.29 55.43 0.74 -25.75 16 15 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 19 C -0.08 -0.77 1.78 -90.62 -0.16 -0.94 16 20 C -0.12 -1.10 4.85 -26.73 -0.13 -1.23 16 21 C -0.12 -1.00 5.92 -26.73 -0.16 -1.15 16 22 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 23 C -0.12 -1.12 5.92 -26.75 -0.16 -1.28 16 24 C -0.12 -1.34 4.86 -26.75 -0.13 -1.47 16 25 H 0.05 0.53 6.43 -51.93 -0.33 0.20 16 26 H 0.06 0.66 5.89 -51.93 -0.31 0.36 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.72 8.07 -51.93 -0.42 0.30 16 29 H 0.09 1.33 5.45 -51.93 -0.28 1.04 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.67 5.98 -51.93 -0.31 0.36 16 32 H 0.07 0.82 6.37 -51.92 -0.33 0.49 16 33 H 0.39 7.45 6.06 -40.82 -0.25 7.21 16 34 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.56 6.43 -51.93 -0.33 0.23 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.56 8.14 -51.92 -0.42 0.13 16 46 H 0.07 0.80 6.32 -51.93 -0.33 0.47 16 47 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 356.73 15.07 5.38 5.38 Total: -1.00 -32.21 356.73 -9.47 -41.68 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -8.35 Total: 3.84 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: -1.43 Total: 1.17 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: -0.13 Total: -53.04 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: 0.08 Total: -15.08 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.21 -9.47 -41.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875539773.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.469 kcal (2) G-P(sol) polarization free energy of solvation -32.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds