Wall clock time and date at job start Tue Mar 31 2020 05:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47036 * 2 1 4 4 C 1.52996 * 109.47270 * 239.99745 * 2 1 3 5 5 N 1.46499 * 109.47198 * 64.99984 * 4 2 1 6 6 C 1.46499 * 120.00136 * 270.00278 * 5 4 2 7 7 C 1.34784 * 119.99893 * 90.00083 * 5 4 2 8 8 O 1.21588 * 119.99858 * 359.97438 * 7 5 4 9 9 N 1.34773 * 119.99935 * 179.72905 * 7 5 4 10 10 C 1.46496 * 119.99973 * 180.02562 * 9 7 5 11 11 C 1.50703 * 109.47316 * 179.97438 * 10 9 7 12 12 H 1.08002 * 119.99971 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00060 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00031 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00108 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46864 * 60.00209 * 15 13 11 17 17 H 1.48496 * 109.47475 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47151 * 300.00620 * 15 13 11 19 19 C 1.53004 * 109.46838 * 120.00097 * 2 1 3 20 20 C 1.52996 * 109.46903 * 299.99873 * 19 2 1 21 21 C 1.52999 * 109.47265 * 180.02562 * 20 19 2 22 22 C 1.53001 * 109.47484 * 59.99741 * 21 20 19 23 23 C 1.52999 * 109.46785 * 300.00585 * 22 21 20 24 24 C 1.53001 * 109.46838 * 180.02562 * 19 2 1 25 25 H 1.08999 * 109.47162 * 300.00027 * 1 2 3 26 26 H 1.09003 * 109.47184 * 60.00197 * 1 2 3 27 27 H 1.08996 * 109.47036 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47172 * 305.00221 * 4 2 1 29 29 H 1.08998 * 109.47554 * 185.00217 * 4 2 1 30 30 H 1.08999 * 109.47256 * 269.99572 * 6 5 4 31 31 H 1.08998 * 109.47416 * 29.99674 * 6 5 4 32 32 H 1.09008 * 109.47058 * 150.00274 * 6 5 4 33 33 H 0.97004 * 120.00018 * 359.97438 * 9 7 5 34 34 H 1.09007 * 109.47081 * 299.99672 * 10 9 7 35 35 H 1.08997 * 109.47795 * 59.99548 * 10 9 7 36 36 H 0.97003 * 120.00435 * 179.97438 * 14 13 11 37 37 H 1.08996 * 109.47386 * 60.00118 * 19 2 1 38 38 H 1.09005 * 109.47206 * 299.99698 * 20 19 2 39 39 H 1.08998 * 109.47764 * 60.00313 * 20 19 2 40 40 H 1.09005 * 109.46971 * 299.99901 * 21 20 19 41 41 H 1.08999 * 109.47506 * 180.02562 * 21 20 19 42 42 H 1.08994 * 109.47518 * 180.02562 * 22 21 20 43 43 H 1.09005 * 109.46886 * 60.00108 * 22 21 20 44 44 H 1.08996 * 109.47273 * 299.99372 * 23 22 21 45 45 H 1.09011 * 109.47161 * 179.97438 * 23 22 21 46 46 H 1.08999 * 109.47162 * 299.99877 * 24 19 2 47 47 H 1.08996 * 109.47036 * 59.99903 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6525 0.0352 -2.4423 6 6 0.3746 -0.2424 -3.1028 7 6 2.4716 0.9868 -2.9325 8 8 3.5320 1.2176 -2.3841 9 7 2.1176 1.6790 -4.0333 10 6 3.0082 2.7128 -4.5664 11 6 2.3842 3.3307 -5.7912 12 1 1.4208 2.9873 -6.1381 13 6 3.0433 4.3344 -6.4689 14 7 4.2166 4.7523 -6.0468 15 14 2.2702 5.0997 -7.9874 16 1 0.9651 5.7086 -7.6250 17 1 3.1728 6.1478 -8.5277 18 1 2.0581 4.0509 -9.0170 19 6 2.0399 -0.7213 1.2493 20 6 1.5299 0.0000 2.4984 21 6 2.0403 -0.7209 3.7477 22 6 3.5703 -0.7205 3.7476 23 6 4.0803 -1.4417 2.4983 24 6 3.5700 -0.7207 1.2496 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6054 -1.7198 -1.2951 29 1 3.1263 -0.7996 -1.2055 30 1 0.5171 -1.0128 -3.8606 31 1 -0.3484 -0.5887 -2.3642 32 1 0.0044 0.6676 -3.5750 33 1 1.2734 1.4921 -4.4731 34 1 3.1649 3.4825 -3.8105 35 1 3.9656 2.2655 -4.8333 36 1 4.6805 5.4581 -6.5237 37 1 1.6766 -1.7489 1.2493 38 1 1.8934 1.0277 2.4985 39 1 0.4399 0.0000 2.4985 40 1 1.6773 -1.7487 3.7480 41 1 1.6766 -0.2073 4.6377 42 1 3.9340 -1.2344 4.6373 43 1 3.9334 0.3073 3.7473 44 1 3.7173 -2.4695 2.4985 45 1 5.1704 -1.4411 2.4979 46 1 3.9337 -1.2343 0.3596 47 1 3.9329 0.3070 1.2498 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875539773.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:58 Heat of formation + Delta-G solvation = -82.724949 kcal Electronic energy + Delta-G solvation = -23056.319330 eV Core-core repulsion = 19850.897992 eV Total energy + Delta-G solvation = -3205.421338 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.25598 -39.87221 -37.16542 -36.13679 -34.88660 -34.00386 -31.75635 -30.11500 -29.24766 -28.61950 -26.47760 -24.69895 -23.73435 -23.15550 -21.26172 -20.77560 -20.62791 -19.32612 -17.98108 -17.53598 -16.93996 -16.53717 -16.19313 -15.77944 -15.16848 -15.06312 -14.88684 -14.77868 -14.57547 -14.21734 -14.07261 -13.92482 -13.64339 -13.51999 -13.23563 -13.16900 -12.89960 -12.68476 -12.62281 -12.26080 -12.22330 -12.12341 -11.97263 -11.83440 -11.56278 -11.50280 -11.29933 -11.13474 -10.86740 -10.79393 -10.72639 -9.98151 -9.31009 -8.28667 -6.45835 1.42450 1.47466 1.55486 1.86393 2.25730 2.38783 3.05880 3.28131 3.72969 3.76712 3.88404 4.03239 4.20463 4.27797 4.35076 4.39538 4.47099 4.54112 4.61990 4.67520 4.67716 4.74342 4.77925 4.86304 4.88080 4.92854 5.02487 5.08324 5.09131 5.17822 5.24135 5.25879 5.30109 5.33297 5.35839 5.37649 5.47544 5.47970 5.57550 5.62694 5.69426 5.81004 5.85183 6.14559 6.65672 7.21555 7.25269 7.74019 8.83693 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028830 B = 0.003223 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.983678 B = 8685.896299 C = 9129.987749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 H 0.029 0.971 4 C 0.134 3.866 5 N -0.628 5.628 6 C 0.070 3.930 7 C 0.687 3.313 8 O -0.648 6.648 9 N -0.725 5.725 10 C 0.287 3.713 11 C -0.556 4.556 12 H 0.083 0.917 13 C 0.003 3.997 14 N -0.932 5.932 15 Si 0.987 3.013 16 H -0.261 1.261 17 H -0.285 1.285 18 H -0.261 1.261 19 C -0.068 4.068 20 C -0.114 4.114 21 C -0.114 4.114 22 C -0.121 4.121 23 C -0.115 4.115 24 C -0.120 4.120 25 H 0.060 0.940 26 H 0.050 0.950 27 H 0.079 0.921 28 H 0.108 0.892 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.106 0.894 32 H 0.064 0.936 33 H 0.403 0.597 34 H -0.019 1.019 35 H -0.018 1.018 36 H 0.269 0.731 37 H 0.092 0.908 38 H 0.039 0.961 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.045 0.955 44 H 0.076 0.924 45 H 0.055 0.945 46 H 0.055 0.945 47 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.433 -15.742 15.832 25.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.119 4.119 3 H 0.048 0.952 4 C 0.012 3.988 5 N -0.365 5.365 6 C -0.072 4.072 7 C 0.388 3.612 8 O -0.530 6.530 9 N -0.380 5.380 10 C 0.164 3.836 11 C -0.594 4.594 12 H 0.101 0.899 13 C -0.196 4.196 14 N -0.570 5.570 15 Si 0.810 3.190 16 H -0.186 1.186 17 H -0.210 1.210 18 H -0.185 1.185 19 C -0.087 4.087 20 C -0.151 4.151 21 C -0.151 4.151 22 C -0.159 4.159 23 C -0.152 4.152 24 C -0.157 4.157 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.098 0.902 28 H 0.126 0.874 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.124 0.876 32 H 0.083 0.917 33 H 0.240 0.760 34 H -0.001 1.001 35 H 0.000 1.000 36 H 0.078 0.922 37 H 0.110 0.890 38 H 0.058 0.942 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.064 0.936 44 H 0.094 0.906 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -10.543 -15.453 16.164 24.723 hybrid contribution 0.212 1.003 -0.996 1.429 sum -10.332 -14.451 15.167 23.358 Atomic orbital electron populations 1.21942 0.93332 1.02951 1.01823 1.21508 0.97380 0.98424 0.94579 0.95221 1.21567 1.00289 0.94617 0.82369 1.47059 1.20640 1.38128 1.30686 1.22086 0.84285 1.01834 0.98964 1.16357 0.83591 0.80199 0.81055 1.90818 1.26481 1.71985 1.63763 1.45447 1.24421 1.39694 1.28470 1.18360 0.88552 0.84239 0.92463 1.21557 1.06248 1.20506 1.11063 0.89907 1.26096 0.95141 0.96763 1.01608 1.70145 1.15637 1.29297 1.41923 0.85175 0.78210 0.77944 0.77680 1.18565 1.21019 1.18548 1.21066 0.94249 1.00174 0.93168 1.21623 1.00964 0.98385 0.94163 1.21513 0.95040 1.01283 0.97296 1.21560 0.96398 1.00067 0.97878 1.21509 0.99982 0.99764 0.93976 1.21635 0.96277 0.99545 0.98267 0.92112 0.93093 0.90228 0.87433 0.92456 0.91502 0.87585 0.91700 0.76046 1.00080 0.99955 0.92210 0.88989 0.94248 0.90466 0.90694 0.91516 0.90941 0.93579 0.90577 0.92599 0.92623 0.94974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 7.83 71.98 0.56 -2.01 16 2 C -0.10 -2.39 2.18 -10.79 -0.02 -2.41 16 3 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 4 C 0.13 3.54 4.68 86.38 0.40 3.94 16 5 N -0.63 -19.63 2.70 -864.92 -2.33 -21.97 16 6 C 0.07 1.49 9.27 127.77 1.18 2.67 16 7 C 0.69 30.70 8.28 179.05 1.48 32.18 16 8 O -0.65 -35.38 15.92 -3.99 -0.06 -35.45 16 9 N -0.73 -33.34 5.41 -482.30 -2.61 -35.96 16 10 C 0.29 16.65 5.43 85.63 0.46 17.12 16 11 C -0.56 -31.21 9.28 25.60 0.24 -30.97 16 12 H 0.08 4.18 7.60 -2.91 -0.02 4.16 16 13 C 0.00 0.20 5.46 84.66 0.46 0.66 16 14 N -0.93 -57.56 13.29 21.45 0.28 -57.28 16 15 Si 0.99 42.94 29.54 68.60 2.03 44.96 16 16 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 17 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 18 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 19 C -0.07 -1.33 1.78 -10.79 -0.02 -1.34 16 20 C -0.11 -2.04 4.85 30.59 0.15 -1.89 16 21 C -0.11 -1.68 5.92 30.59 0.18 -1.49 16 22 C -0.12 -2.03 5.92 30.59 0.18 -1.84 16 23 C -0.11 -2.10 5.92 30.58 0.18 -1.92 16 24 C -0.12 -2.82 4.86 30.58 0.15 -2.67 16 25 H 0.06 1.03 6.43 -2.39 -0.02 1.02 16 26 H 0.05 1.00 5.89 -2.39 -0.01 0.99 16 27 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.11 1.98 8.07 -2.39 -0.02 1.96 16 29 H 0.06 1.86 5.45 -2.39 -0.01 1.85 16 30 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.11 1.55 5.98 -2.39 -0.01 1.54 16 32 H 0.06 1.43 6.37 -2.38 -0.02 1.41 16 33 H 0.40 15.45 6.06 -92.71 -0.56 14.89 16 34 H -0.02 -1.22 8.14 -2.38 -0.02 -1.24 16 35 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 36 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 37 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.04 0.87 8.14 -2.38 -0.02 0.86 16 39 H 0.08 1.18 6.43 -2.39 -0.02 1.16 16 40 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 41 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 44 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 46 H 0.06 1.41 6.32 -2.39 -0.02 1.39 16 47 H 0.03 0.94 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -75.70 356.73 3.27 -72.42 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: 0.37 Total: 23.25 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: 5.60 Total: 10.01 kcal Atomic # 7 Polarization: -110.54 SS G_CDS: -4.66 Total: -115.20 kcal Atomic # 8 Polarization: -35.38 SS G_CDS: -0.06 Total: -35.45 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Total: -75.70 3.27 -72.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875539773.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.302 kcal (2) G-P(sol) polarization free energy of solvation -75.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds