Wall clock time and date at job start Tue Mar 31 2020 05:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46832 * 2 1 4 4 C 1.52996 * 109.47131 * 119.99675 * 2 1 3 5 5 N 1.46501 * 109.47377 * 295.00488 * 4 2 1 6 6 C 1.46503 * 119.99859 * 270.00039 * 5 4 2 7 7 C 1.34776 * 120.00291 * 89.99984 * 5 4 2 8 8 O 1.21588 * 120.00175 * 359.97438 * 7 5 4 9 9 N 1.34780 * 120.00066 * 180.02562 * 7 5 4 10 10 C 1.46501 * 120.00128 * 179.97438 * 9 7 5 11 11 C 1.50700 * 109.47107 * 179.97438 * 10 9 7 12 12 H 1.07998 * 120.00164 * 359.97438 * 11 10 9 13 13 C 1.37871 * 119.99803 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00089 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 120.00079 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47310 * 89.99726 * 15 13 11 17 17 H 1.48503 * 109.47151 * 209.99732 * 15 13 11 18 18 H 1.48497 * 109.47069 * 329.99469 * 15 13 11 19 19 C 1.52992 * 109.47482 * 240.00026 * 2 1 3 20 20 C 1.52997 * 109.47482 * 179.97438 * 19 2 1 21 21 C 1.53000 * 109.47060 * 180.02562 * 20 19 2 22 22 C 1.52996 * 109.47328 * 60.00126 * 21 20 19 23 23 C 1.53002 * 109.46891 * 299.99597 * 22 21 20 24 24 C 1.52997 * 109.46978 * 60.00410 * 23 22 21 25 25 H 1.09004 * 109.47261 * 300.00019 * 1 2 3 26 26 H 1.09002 * 109.47153 * 60.00191 * 1 2 3 27 27 H 1.09001 * 109.47289 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46920 * 54.99996 * 4 2 1 29 29 H 1.08998 * 109.47295 * 175.00289 * 4 2 1 30 30 H 1.08994 * 109.47651 * 89.99481 * 6 5 4 31 31 H 1.08999 * 109.47330 * 209.99868 * 6 5 4 32 32 H 1.09008 * 109.46904 * 329.99404 * 6 5 4 33 33 H 0.96998 * 119.99800 * 359.97438 * 9 7 5 34 34 H 1.09002 * 109.46812 * 299.99762 * 10 9 7 35 35 H 1.08999 * 109.47063 * 59.99230 * 10 9 7 36 36 H 0.97003 * 119.99919 * 180.02562 * 14 13 11 37 37 H 1.08998 * 109.46862 * 300.00565 * 19 2 1 38 38 H 1.09002 * 109.47153 * 59.99783 * 20 19 2 39 39 H 1.09001 * 109.46832 * 299.99974 * 20 19 2 40 40 H 1.09004 * 109.46724 * 180.02562 * 21 20 19 41 41 H 1.09001 * 109.47194 * 299.99650 * 21 20 19 42 42 H 1.08992 * 109.47554 * 59.99639 * 22 21 20 43 43 H 1.09004 * 109.47108 * 179.97438 * 22 21 20 44 44 H 1.09002 * 109.47097 * 180.02562 * 23 22 21 45 45 H 1.09001 * 109.47142 * 300.00176 * 23 22 21 46 46 H 1.09001 * 109.47375 * 59.99908 * 24 23 22 47 47 H 1.09000 * 109.47140 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6523 0.0354 2.4424 6 6 2.5426 1.0698 2.9751 7 6 0.4767 -0.2201 3.0500 8 8 -0.2624 -1.0782 2.6076 9 7 0.1199 0.4763 4.1473 10 6 -1.1582 0.1990 4.8075 11 6 -1.3148 1.1065 6.0003 12 1 -0.5396 1.8183 6.2428 13 6 -2.4472 1.0273 6.7828 14 7 -3.3909 0.1601 6.4878 15 14 -2.6411 2.1516 8.2618 16 1 -3.3182 3.4058 7.8449 17 1 -3.4569 1.4697 9.2985 18 1 -1.3023 2.4732 8.8180 19 6 2.0400 -0.7212 -1.2492 20 6 3.5700 -0.7206 -1.2495 21 6 4.0800 -1.4413 -2.4990 22 6 3.5695 -0.7199 -3.7480 23 6 2.0395 -0.7206 -3.7477 24 6 1.5295 0.0002 -2.4982 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.6053 -1.7197 1.2952 29 1 3.1263 -0.7994 1.2057 30 1 2.3040 2.0277 2.5132 31 1 2.4090 1.1436 4.0544 32 1 3.5773 0.8075 2.7542 33 1 0.7094 1.1612 4.5000 34 1 -1.9746 0.3749 4.1070 35 1 -1.1793 -0.8400 5.1364 36 1 -4.1878 0.1046 7.0382 37 1 1.6766 -1.7488 -1.2492 38 1 3.9337 -1.2342 -0.3595 39 1 3.9329 0.3072 -1.2497 40 1 5.1700 -1.4413 -2.4990 41 1 3.7171 -2.4691 -2.4993 42 1 3.9324 0.3078 -3.7478 43 1 3.9333 -1.2331 -4.6382 44 1 1.6758 -0.2070 -4.6377 45 1 1.6766 -1.7484 -3.7479 46 1 1.8924 1.0280 -2.4980 47 1 0.4395 0.0001 -2.4982 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875539774.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:01 Heat of formation + Delta-G solvation = -63.070821 kcal Electronic energy + Delta-G solvation = -23048.704761 eV Core-core repulsion = 19844.135689 eV Total energy + Delta-G solvation = -3204.569071 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.87797 -38.80230 -35.70376 -34.19695 -33.63119 -32.12214 -31.01365 -29.16022 -27.46988 -26.91803 -25.48298 -23.20534 -22.56086 -22.02931 -20.14886 -19.78822 -19.09670 -17.84208 -16.22019 -15.95357 -15.52113 -15.18974 -14.77486 -14.55751 -14.25699 -13.92353 -13.56573 -13.43824 -13.12979 -12.99918 -12.88271 -12.59080 -12.47899 -12.11708 -11.93442 -11.74850 -11.62267 -11.35603 -11.26555 -11.06990 -11.03225 -10.91458 -10.85049 -10.65071 -10.43433 -10.25087 -10.07600 -9.93260 -9.33413 -9.23621 -8.68711 -8.26017 -7.66255 -6.12593 -4.18903 3.26211 3.28664 3.33130 3.36896 3.99503 4.33976 4.51699 4.56201 4.62017 4.83831 4.94474 5.03593 5.20882 5.23369 5.23815 5.26153 5.31410 5.36064 5.38265 5.50734 5.55583 5.63472 5.65241 5.80523 5.81348 5.84834 5.90252 5.99013 6.00507 6.02353 6.09969 6.15232 6.19455 6.33550 6.34424 6.53922 6.79187 6.88792 7.21795 7.56811 7.60209 7.61897 7.91366 8.06355 8.80224 8.97270 9.38677 9.53437 10.97680 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.040452 B = 0.003022 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.005425 B = 9262.277854 C = 9554.514995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.100 4.100 3 H 0.065 0.935 4 C 0.139 3.861 5 N -0.642 5.642 6 C 0.084 3.916 7 C 0.694 3.306 8 O -0.594 6.594 9 N -0.731 5.731 10 C 0.267 3.733 11 C -0.541 4.541 12 H 0.061 0.939 13 C 0.063 3.937 14 N -0.885 5.885 15 Si 0.903 3.097 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.273 1.273 19 C -0.079 4.079 20 C -0.117 4.117 21 C -0.120 4.120 22 C -0.119 4.119 23 C -0.120 4.120 24 C -0.115 4.115 25 H 0.058 0.942 26 H 0.043 0.957 27 H 0.058 0.942 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.385 0.615 34 H 0.024 0.976 35 H 0.023 0.977 36 H 0.265 0.735 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.060 0.940 46 H 0.059 0.941 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.003 0.628 -17.180 23.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.120 4.120 3 H 0.083 0.917 4 C 0.015 3.985 5 N -0.381 5.381 6 C -0.060 4.060 7 C 0.396 3.604 8 O -0.472 6.472 9 N -0.385 5.385 10 C 0.146 3.854 11 C -0.579 4.579 12 H 0.079 0.921 13 C -0.140 4.140 14 N -0.523 5.523 15 Si 0.730 3.270 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.198 1.198 19 C -0.098 4.098 20 C -0.154 4.154 21 C -0.157 4.157 22 C -0.156 4.156 23 C -0.157 4.157 24 C -0.152 4.152 25 H 0.077 0.923 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.219 0.781 34 H 0.042 0.958 35 H 0.041 0.959 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.077 0.923 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 15.226 -0.082 -17.384 23.110 hybrid contribution 0.128 1.033 1.019 1.456 sum 15.354 0.950 -16.366 22.461 Atomic orbital electron populations 1.21802 0.94125 1.02483 1.00990 1.21569 0.97098 0.99380 0.93915 0.91684 1.21375 0.98474 0.95807 0.82848 1.47064 1.19882 1.40820 1.30349 1.21619 0.93923 0.91164 0.99292 1.16065 0.81097 0.82391 0.80883 1.90863 1.52540 1.36429 1.67412 1.45870 1.24334 1.40020 1.28246 1.18947 0.78516 0.96707 0.91224 1.21224 1.04726 1.20613 1.11352 0.92079 1.24939 0.95475 0.95669 0.97945 1.69982 1.08363 1.34792 1.39160 0.86427 0.78192 0.80426 0.81915 1.20496 1.21023 1.19799 1.21145 0.94745 0.99914 0.94020 1.21670 0.95538 1.00642 0.97598 1.21533 0.99844 0.99529 0.94797 1.21530 0.95915 1.00556 0.97641 1.21542 0.95496 1.00831 0.97869 1.21621 1.00756 0.99065 0.93757 0.92270 0.93781 0.92279 0.90149 0.91225 0.93346 0.91425 0.91649 0.78082 0.95834 0.95861 0.92501 0.91053 0.91733 0.92113 0.92350 0.92058 0.92223 0.92483 0.92364 0.92081 0.92255 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 7.59 37.16 0.28 -1.81 16 2 C -0.10 -1.23 2.18 -90.63 -0.20 -1.43 16 3 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 4 C 0.14 1.87 4.82 -4.04 -0.02 1.85 16 5 N -0.64 -10.13 2.76 -187.35 -0.52 -10.65 16 6 C 0.08 1.00 10.25 59.85 0.61 1.62 16 7 C 0.69 14.64 6.86 -86.92 -0.60 14.04 16 8 O -0.59 -14.65 14.13 5.29 0.07 -14.57 16 9 N -0.73 -16.16 5.41 -66.41 -0.36 -16.52 16 10 C 0.27 7.28 5.43 -5.19 -0.03 7.25 16 11 C -0.54 -14.92 9.28 -34.44 -0.32 -15.24 16 12 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 13 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 14 N -0.89 -26.42 13.29 55.43 0.74 -25.69 16 15 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 19 C -0.08 -0.80 1.78 -90.62 -0.16 -0.96 16 20 C -0.12 -1.00 4.86 -26.73 -0.13 -1.13 16 21 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 22 C -0.12 -0.90 5.92 -26.73 -0.16 -1.06 16 23 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 24 C -0.11 -1.08 4.85 -26.73 -0.13 -1.21 16 25 H 0.06 1.11 6.06 -51.93 -0.31 0.79 16 26 H 0.04 0.59 6.43 -51.93 -0.33 0.26 16 27 H 0.06 0.99 8.00 -51.93 -0.42 0.57 16 28 H 0.08 1.26 7.42 -51.93 -0.39 0.87 16 29 H 0.07 0.75 5.93 -51.93 -0.31 0.44 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.82 6.36 -51.93 -0.33 0.49 16 32 H 0.06 0.61 7.89 -51.92 -0.41 0.20 16 33 H 0.39 7.42 6.05 -40.82 -0.25 7.17 16 34 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.54 6.32 -51.93 -0.33 0.21 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.07 0.68 6.43 -51.93 -0.33 0.34 16 LS Contribution 356.20 15.07 5.37 5.37 Total: -1.00 -31.83 356.20 -9.41 -41.25 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -8.44 Total: 3.39 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -1.26 Total: 1.37 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: -0.14 Total: -52.85 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: 0.07 Total: -14.57 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.83 -9.41 -41.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875539774.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.825 kcal (2) G-P(sol) polarization free energy of solvation -31.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds