Wall clock time and date at job start Tue Mar 31 2020 05:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.46911 * 2 1 4 4 C 1.52996 * 109.47238 * 240.00372 * 2 1 3 5 5 C 1.50702 * 109.47159 * 64.99689 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5 13 13 C 1.52994 * 109.47216 * 119.99968 * 2 1 3 14 14 N 1.46895 * 109.47270 * 295.00157 * 13 2 1 15 15 C 1.46901 * 111.00119 * 179.97438 * 14 13 2 16 16 C 1.53002 * 109.47515 * 179.97438 * 15 14 13 17 17 H 1.09002 * 109.17743 * 304.99990 * 16 15 14 18 18 C 1.53780 * 109.18855 * 185.69848 * 16 15 14 19 19 N 1.45473 * 107.44898 * 185.60794 * 18 16 15 20 20 C 1.46106 * 118.12300 * 182.78601 * 19 18 16 21 21 C 1.54915 * 105.80632 * 207.54813 * 20 19 18 22 22 C 1.55427 * 104.96073 * 4.06022 * 21 20 19 23 23 C 1.48866 * 109.16955 * 62.53844 * 19 18 16 24 24 H 1.09000 * 111.15176 * 54.16613 * 23 19 18 25 25 C 1.52322 * 106.88478 * 292.32747 * 23 19 18 26 26 O 1.42649 * 109.18097 * 64.30050 * 16 15 14 27 27 H 1.09001 * 109.46786 * 299.99917 * 1 2 3 28 28 H 1.09001 * 109.46849 * 59.99383 * 1 2 3 29 29 H 1.08994 * 109.47016 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 31 31 H 1.08994 * 109.47405 * 184.99723 * 4 2 1 32 32 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 33 33 H 1.08998 * 109.46945 * 55.00387 * 13 2 1 34 34 H 1.09002 * 109.47045 * 174.99748 * 13 2 1 35 35 H 1.00903 * 111.00409 * 303.94857 * 14 13 2 36 36 H 1.09002 * 109.47120 * 300.00343 * 15 14 13 37 37 H 1.08996 * 109.46927 * 59.99912 * 15 14 13 38 38 H 1.08999 * 109.85757 * 305.09207 * 18 16 15 39 39 H 1.09005 * 109.86026 * 66.04407 * 18 16 15 40 40 H 1.09004 * 110.18708 * 326.63485 * 20 19 18 41 41 H 1.08998 * 110.18359 * 88.46732 * 20 19 18 42 42 H 1.09005 * 110.33749 * 122.92689 * 21 20 19 43 43 H 1.08994 * 110.34510 * 245.07854 * 21 20 19 44 44 H 1.08999 * 110.93257 * 140.46866 * 22 21 20 45 45 H 1.09001 * 110.93124 * 264.10162 * 22 21 20 46 46 H 1.08998 * 109.91071 * 180.66228 * 25 23 19 47 47 H 1.08993 * 109.91473 * 301.74874 * 25 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 1.6413 0.0572 -2.4766 6 1 1.0806 0.9747 -2.3757 7 6 1.9977 -0.3988 -3.7281 8 7 2.6809 -1.5159 -3.8509 9 14 1.5101 0.5700 -5.2489 10 1 0.7525 1.7809 -4.8427 11 1 2.7315 0.9761 -5.9897 12 1 0.6593 -0.2765 -6.1234 13 6 2.0400 -0.7212 1.2492 14 7 1.6514 0.0374 2.4456 15 6 2.1248 -0.6272 3.6671 16 6 1.7025 0.1908 4.8892 17 1 2.0651 1.2128 4.7788 18 6 2.3213 -0.4311 6.1522 19 7 1.7904 0.2900 7.2986 20 6 2.2772 -0.0743 8.6271 21 6 1.1296 0.2748 9.6075 22 6 -0.0405 0.7512 8.7021 23 6 0.3147 0.1015 7.3540 24 1 0.0529 -0.9566 7.3489 25 6 -0.2695 0.8262 6.1483 26 8 0.2786 0.2053 4.9744 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6054 -1.7197 -1.2952 31 1 3.1263 -0.7993 -1.2057 32 1 2.9313 -1.8368 -4.7314 33 1 1.6054 -1.7198 1.2950 34 1 3.1263 -0.7995 1.2055 35 1 1.9882 0.9873 2.3967 36 1 1.6904 -1.6250 3.7296 37 1 3.2116 -0.7051 3.6405 38 1 2.0481 -1.4843 6.2182 39 1 3.4063 -0.3315 6.1206 40 1 2.4953 -1.1415 8.6682 41 1 3.1692 0.5022 8.8720 42 1 0.8344 -0.6079 10.1749 43 1 1.4376 1.0730 10.2827 44 1 -0.9960 0.3804 9.0733 45 1 -0.0520 1.8380 8.6203 46 1 -1.3551 0.7291 6.1470 47 1 0.0088 1.8796 6.1776 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877022144.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:03 Heat of formation + Delta-G solvation = -51.957219 kcal Electronic energy + Delta-G solvation = -22466.161764 eV Core-core repulsion = 19262.074615 eV Total energy + Delta-G solvation = -3204.087149 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.46670 -37.51831 -36.43542 -34.20643 -32.97645 -31.86769 -30.47872 -29.25819 -26.79150 -25.72153 -24.87671 -23.94925 -22.16515 -21.63385 -21.18916 -20.46256 -18.98140 -16.84387 -16.41317 -16.23289 -15.93940 -15.48745 -15.05959 -14.87572 -14.51219 -14.19058 -14.05705 -13.61072 -13.54878 -12.98887 -12.92414 -12.68466 -12.17271 -12.14950 -11.81264 -11.50233 -11.46771 -11.42554 -11.28487 -11.18754 -11.02080 -10.81583 -10.69314 -10.47720 -10.22620 -10.13534 -9.70770 -9.62705 -9.07673 -8.88590 -8.68142 -8.28873 -7.99738 -5.93589 -3.94157 3.35078 3.42462 3.43798 3.47140 3.63781 4.13660 4.31369 4.37790 4.51631 4.61304 4.79922 4.86622 4.95333 5.00276 5.01942 5.16374 5.27700 5.36475 5.38345 5.42332 5.44302 5.47613 5.51390 5.58392 5.59515 5.76964 5.80800 5.83616 5.95510 6.02765 6.24300 6.49280 6.50577 6.63461 6.79416 6.83141 7.09644 7.21770 7.28019 7.29018 7.45889 7.72644 7.76855 7.91664 8.07402 8.51900 9.12583 9.68947 11.18067 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.051456 B = 0.002491 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.018719 B =11236.620324 C =11567.808724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.081 4.081 3 H 0.053 0.947 4 C 0.026 3.974 5 C -0.510 4.510 6 H 0.057 0.943 7 C 0.053 3.947 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.064 3.936 14 N -0.678 5.678 15 C 0.066 3.934 16 C 0.105 3.895 17 H 0.062 0.938 18 C 0.031 3.969 19 N -0.541 5.541 20 C 0.051 3.949 21 C -0.127 4.127 22 C -0.113 4.113 23 C 0.027 3.973 24 H 0.063 0.937 25 C 0.077 3.923 26 O -0.363 6.363 27 H 0.044 0.956 28 H 0.052 0.948 29 H 0.038 0.962 30 H 0.016 0.984 31 H 0.012 0.988 32 H 0.258 0.742 33 H 0.066 0.934 34 H 0.022 0.978 35 H 0.336 0.664 36 H 0.076 0.924 37 H 0.041 0.959 38 H 0.042 0.958 39 H 0.084 0.916 40 H 0.038 0.962 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.078 0.922 46 H 0.096 0.904 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.379 3.172 27.719 28.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.100 4.100 3 H 0.071 0.929 4 C -0.011 4.011 5 C -0.548 4.548 6 H 0.075 0.925 7 C -0.147 4.147 8 N -0.538 5.538 9 Si 0.718 3.282 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.064 4.064 14 N -0.308 5.308 15 C -0.064 4.064 16 C 0.046 3.954 17 H 0.080 0.920 18 C -0.098 4.098 19 N -0.267 5.267 20 C -0.076 4.076 21 C -0.165 4.165 22 C -0.151 4.151 23 C -0.081 4.081 24 H 0.081 0.919 25 C 0.000 4.000 26 O -0.281 6.281 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.034 0.966 31 H 0.030 0.970 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.040 0.960 35 H 0.154 0.846 36 H 0.095 0.905 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.102 0.898 40 H 0.057 0.943 41 H 0.097 0.903 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.097 0.903 46 H 0.114 0.886 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.859 3.170 27.379 27.710 hybrid contribution 0.945 -0.233 -0.558 1.122 sum -1.914 2.938 26.821 27.049 Atomic orbital electron populations 1.21579 0.95645 1.00551 1.00186 1.21184 0.96099 0.98827 0.93926 0.92892 1.19135 0.95858 0.95614 0.90525 1.21291 1.34235 1.08284 0.90988 0.92494 1.25034 0.95405 0.95144 0.99118 1.69983 1.39253 1.21342 1.23202 0.86571 0.78187 0.80169 0.83287 1.19740 1.21168 1.21108 1.22155 0.96928 0.97796 0.89520 1.60413 1.64024 1.05417 1.00962 1.21927 0.96888 0.98547 0.89058 1.22146 0.81633 0.98925 0.92655 0.92016 1.22638 1.00400 0.96123 0.90600 1.62683 1.04466 1.57000 1.02561 1.22487 0.98363 0.98815 0.87971 1.22657 0.94962 1.01366 0.97558 1.22304 0.97893 1.01281 0.93634 1.23334 0.88911 0.99412 0.96428 0.91942 1.22538 0.98050 0.96258 0.83183 1.88037 1.19510 1.79663 1.40935 0.93703 0.92913 0.94251 0.96566 0.96975 0.93215 0.91594 0.95951 0.84645 0.90518 0.94149 0.93931 0.89771 0.94350 0.90347 0.91430 0.90817 0.90802 0.90335 0.88601 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.50 8.89 37.16 0.33 -2.17 16 2 C -0.08 -1.72 2.48 -90.62 -0.22 -1.94 16 3 H 0.05 1.12 8.14 -51.92 -0.42 0.70 16 4 C 0.03 0.69 4.45 -27.88 -0.12 0.56 16 5 C -0.51 -14.55 8.41 -34.44 -0.29 -14.84 16 6 H 0.06 1.59 7.06 -52.49 -0.37 1.22 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -27.40 13.29 55.43 0.74 -26.66 16 9 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 13 C 0.06 1.16 5.07 -3.83 -0.02 1.14 16 14 N -0.68 -10.43 5.89 -113.78 -0.67 -11.09 16 15 C 0.07 0.85 5.33 -3.82 -0.02 0.83 16 16 C 0.11 1.24 3.05 -26.32 -0.08 1.16 16 17 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 18 C 0.03 0.31 5.36 -4.19 -0.02 0.29 16 19 N -0.54 -5.17 4.65 -225.06 -1.05 -6.21 16 20 C 0.05 0.40 6.89 -3.24 -0.02 0.37 16 21 C -0.13 -0.80 6.99 -24.43 -0.17 -0.97 16 22 C -0.11 -0.76 6.63 -25.03 -0.17 -0.93 16 23 C 0.03 0.24 2.79 -66.55 -0.19 0.06 16 24 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 25 C 0.08 0.78 6.67 36.81 0.25 1.02 16 26 O -0.36 -4.82 10.28 -35.23 -0.36 -5.19 16 27 H 0.04 0.84 7.75 -51.93 -0.40 0.44 16 28 H 0.05 1.14 6.95 -51.93 -0.36 0.78 16 29 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.34 4.91 8.73 -39.29 -0.34 4.57 16 36 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.04 0.44 8.10 -51.93 -0.42 0.02 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.04 0.29 8.07 -51.93 -0.42 -0.13 16 41 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.08 0.53 8.12 -51.93 -0.42 0.11 16 46 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 364.87 15.07 5.50 5.50 Total: -1.00 -31.19 364.87 -10.77 -41.96 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -9.06 Total: -1.35 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: -0.85 Total: -13.96 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: -0.98 Total: -43.97 kcal Atomic # 8 Polarization: -4.82 SS G_CDS: -0.36 Total: -5.19 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.19 -10.77 -41.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877022144.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.002 kcal (2) G-P(sol) polarization free energy of solvation -31.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds