Wall clock time and date at job start Tue Mar 31 2020 05:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08994 * 109.46704 * 2 1 4 4 C 1.53001 * 109.46855 * 239.99996 * 2 1 3 5 5 C 1.50703 * 109.47012 * 65.00264 * 4 2 1 6 6 H 1.07998 * 119.99974 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00187 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99776 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00185 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46846 * 90.00127 * 9 7 5 11 11 H 1.48500 * 109.46993 * 209.99659 * 9 7 5 12 12 H 1.48501 * 109.47003 * 329.99834 * 9 7 5 13 13 C 1.52995 * 109.47130 * 120.00342 * 2 1 3 14 14 N 1.46906 * 109.46978 * 294.99913 * 13 2 1 15 15 C 1.46901 * 110.99793 * 180.02562 * 14 13 2 16 16 C 1.53000 * 109.46769 * 180.02562 * 15 14 13 17 17 H 1.08992 * 109.16747 * 59.99933 * 16 15 14 18 18 C 1.53766 * 109.16531 * 179.26498 * 16 15 14 19 19 N 1.45636 * 107.39580 * 174.74493 * 18 16 15 20 20 C 1.46897 * 117.35594 * 180.19891 * 19 18 16 21 21 C 1.55299 * 103.36091 * 162.46352 * 20 19 18 22 22 C 1.55080 * 104.90750 * 335.88725 * 21 20 19 23 23 C 1.48939 * 108.68064 * 297.12221 * 19 18 16 24 24 H 1.09008 * 110.33465 * 307.99976 * 23 19 18 25 25 C 1.52177 * 107.08277 * 68.00056 * 23 19 18 26 26 O 1.42651 * 109.16574 * 300.73181 * 16 15 14 27 27 H 1.08994 * 109.46704 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46753 * 299.99894 * 1 2 3 29 29 H 1.08994 * 109.47203 * 59.99889 * 1 2 3 30 30 H 1.09004 * 109.46816 * 184.99631 * 4 2 1 31 31 H 1.08993 * 109.47518 * 305.00266 * 4 2 1 32 32 H 0.96999 * 120.00038 * 180.02562 * 8 7 5 33 33 H 1.08995 * 109.46859 * 175.00205 * 13 2 1 34 34 H 1.09002 * 109.47639 * 54.99873 * 13 2 1 35 35 H 1.00899 * 110.99995 * 56.04730 * 14 13 2 36 36 H 1.09002 * 109.47401 * 59.99808 * 15 14 13 37 37 H 1.09001 * 109.46874 * 299.99821 * 15 14 13 38 38 H 1.08999 * 109.87258 * 294.15769 * 18 16 15 39 39 H 1.08992 * 109.87935 * 55.21851 * 18 16 15 40 40 H 1.09000 * 110.63657 * 280.93048 * 20 19 18 41 41 H 1.09000 * 110.64138 * 43.82844 * 20 19 18 42 42 H 1.08999 * 110.35183 * 94.74625 * 21 20 19 43 43 H 1.09001 * 110.34980 * 217.02551 * 21 20 19 44 44 H 1.09004 * 110.51231 * 238.46358 * 22 21 20 45 45 H 1.09001 * 110.51144 * 115.75277 * 22 21 20 46 46 H 1.08999 * 109.91870 * 179.23554 * 25 23 19 47 47 H 1.09000 * 109.91698 * 58.06022 * 25 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6414 0.0571 -2.4766 6 1 1.0800 0.9742 -2.3757 7 6 1.9932 -0.4016 -3.7283 8 7 2.6772 -1.5182 -3.8512 9 14 1.4984 0.5629 -5.2497 10 1 2.5632 1.5432 -5.5822 11 1 1.3122 -0.3712 -6.3890 12 1 0.2266 1.2833 -4.9872 13 6 2.0401 -0.7213 1.2492 14 7 1.6514 0.0374 2.4456 15 6 2.1259 -0.6267 3.6671 16 6 1.7024 0.1907 4.8892 17 1 0.6152 0.2644 4.9112 18 6 2.1863 -0.5198 6.1641 19 7 1.8759 0.3488 7.2911 20 6 2.2535 -0.1221 8.6303 21 6 2.2143 1.1708 9.4897 22 6 2.4239 2.3282 8.4790 23 6 2.6405 1.6181 7.1399 24 1 3.6979 1.4066 6.9806 25 6 2.0620 2.3477 5.9363 26 8 2.2588 1.5007 4.7921 27 1 -0.3632 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 3.1264 -0.7994 -1.2056 31 1 1.6054 -1.7197 -1.2952 32 1 2.9251 -1.8407 -4.7318 33 1 3.1263 -0.7995 1.2055 34 1 1.6055 -1.7199 1.2951 35 1 0.6529 0.1792 2.4753 36 1 3.2128 -0.7039 3.6400 37 1 1.6921 -1.6247 3.7299 38 1 1.6677 -1.4717 6.2773 39 1 3.2620 -0.6871 6.1096 40 1 1.5315 -0.8507 8.9991 41 1 3.2565 -0.5488 8.6190 42 1 1.2473 1.2689 9.9831 43 1 3.0175 1.1607 10.2265 44 1 3.3028 2.9147 8.7468 45 1 1.5387 2.9628 8.4360 46 1 2.5819 3.2946 5.7910 47 1 0.9975 2.5268 6.0870 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877022146.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:05 Heat of formation + Delta-G solvation = -51.225688 kcal Electronic energy + Delta-G solvation = -22470.061379 eV Core-core repulsion = 19266.005952 eV Total energy + Delta-G solvation = -3204.055428 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.49164 -37.54115 -36.48508 -34.18633 -32.98118 -31.86784 -30.45409 -29.24810 -26.84315 -25.82369 -24.86244 -24.05859 -22.14417 -21.57815 -21.22777 -20.42421 -18.87188 -16.91483 -16.36594 -16.31272 -15.78130 -15.66500 -15.16006 -14.95634 -14.50282 -14.11513 -13.93126 -13.73937 -13.36115 -13.14055 -12.88582 -12.70082 -12.23708 -12.10604 -11.78845 -11.71549 -11.51520 -11.46908 -11.31955 -11.16371 -10.92804 -10.85011 -10.68102 -10.50513 -10.26751 -10.11321 -9.70823 -9.65170 -9.08659 -8.90693 -8.79026 -8.28312 -8.01099 -5.93197 -3.93942 3.36574 3.42493 3.45739 3.46585 3.63857 4.14348 4.30680 4.39977 4.51959 4.63822 4.80088 4.87533 4.94755 4.99593 5.03057 5.17623 5.23621 5.36341 5.38347 5.42577 5.44883 5.48798 5.52455 5.58489 5.60482 5.75160 5.84568 5.85098 5.87540 6.01560 6.13399 6.31881 6.43622 6.53840 6.63577 6.76346 7.01040 7.17365 7.22199 7.24505 7.46872 7.74152 7.76743 7.92446 8.07642 8.51853 9.12502 9.69133 11.18401 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.047181 B = 0.002504 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.315205 B =11177.471277 C =11426.620709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 H 0.066 0.934 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.065 3.935 14 N -0.679 5.679 15 C 0.066 3.934 16 C 0.104 3.896 17 H 0.061 0.939 18 C 0.025 3.975 19 N -0.528 5.528 20 C 0.043 3.957 21 C -0.121 4.121 22 C -0.113 4.113 23 C 0.022 3.978 24 H 0.060 0.940 25 C 0.076 3.924 26 O -0.361 6.361 27 H 0.040 0.960 28 H 0.032 0.968 29 H 0.062 0.938 30 H 0.015 0.985 31 H 0.014 0.986 32 H 0.259 0.741 33 H 0.066 0.934 34 H 0.021 0.979 35 H 0.337 0.663 36 H 0.076 0.924 37 H 0.040 0.960 38 H 0.085 0.915 39 H 0.044 0.956 40 H 0.081 0.919 41 H 0.041 0.959 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.097 0.903 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.376 3.786 27.483 27.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.084 0.916 4 C -0.010 4.010 5 C -0.549 4.549 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.064 4.064 14 N -0.311 5.311 15 C -0.065 4.065 16 C 0.045 3.955 17 H 0.079 0.921 18 C -0.104 4.104 19 N -0.253 5.253 20 C -0.085 4.085 21 C -0.159 4.159 22 C -0.152 4.152 23 C -0.086 4.086 24 H 0.078 0.922 25 C -0.001 4.001 26 O -0.279 6.279 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.081 0.919 30 H 0.033 0.967 31 H 0.032 0.968 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.040 0.960 35 H 0.156 0.844 36 H 0.094 0.906 37 H 0.058 0.942 38 H 0.103 0.897 39 H 0.063 0.937 40 H 0.099 0.901 41 H 0.059 0.941 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.094 0.906 46 H 0.115 0.885 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.218 4.166 27.118 27.463 hybrid contribution -0.039 -0.741 -0.550 0.924 sum -1.257 3.425 26.567 26.816 Atomic orbital electron populations 1.21739 0.96744 1.00327 1.00294 1.21211 0.94814 1.00175 0.94055 0.91554 1.19116 0.96134 0.95337 0.90418 1.21251 1.34459 1.08218 0.90986 0.92548 1.25030 0.95413 0.95106 0.99102 1.69972 1.39203 1.21289 1.23311 0.86624 0.78928 0.79793 0.82832 1.20732 1.21376 1.19917 1.22144 1.00342 0.94231 0.89634 1.60446 1.19438 1.50325 1.00867 1.21941 1.01465 0.93954 0.89095 1.22142 0.97268 0.83363 0.92692 0.92118 1.22729 0.99808 0.97007 0.90897 1.63939 1.54607 1.05303 1.01434 1.22840 0.99279 0.97483 0.88896 1.22563 1.02278 0.93715 0.97341 1.22067 1.02310 0.97506 0.93268 1.23183 0.96851 0.92095 0.96503 0.92200 1.22536 1.00314 0.93239 0.84041 1.88072 1.78330 1.23327 1.38192 0.94116 0.94923 0.91893 0.96675 0.96793 0.93155 0.91529 0.96028 0.84420 0.90555 0.94168 0.89678 0.93735 0.90105 0.94117 0.90835 0.91300 0.91022 0.90593 0.88537 0.92196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 8.78 37.16 0.33 -2.24 16 2 C -0.08 -1.77 2.55 -90.62 -0.23 -2.00 16 3 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 4 C 0.03 0.72 4.45 -27.88 -0.12 0.60 16 5 C -0.51 -14.57 8.41 -34.44 -0.29 -14.86 16 6 H 0.06 1.57 7.06 -52.49 -0.37 1.20 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 9 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.06 1.18 5.14 -3.82 -0.02 1.16 16 14 N -0.68 -10.70 6.34 -113.78 -0.72 -11.42 16 15 C 0.07 0.86 5.36 -3.82 -0.02 0.84 16 16 C 0.10 1.24 3.07 -26.33 -0.08 1.16 16 17 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 18 C 0.02 0.25 5.35 -4.11 -0.02 0.23 16 19 N -0.53 -5.06 4.86 -224.48 -1.09 -6.16 16 20 C 0.04 0.33 6.74 -2.61 -0.02 0.31 16 21 C -0.12 -0.77 7.06 -24.41 -0.17 -0.94 16 22 C -0.11 -0.78 6.66 -25.58 -0.17 -0.95 16 23 C 0.02 0.20 2.64 -66.94 -0.18 0.02 16 24 H 0.06 0.60 8.01 -51.92 -0.42 0.19 16 25 C 0.08 0.78 6.65 36.74 0.24 1.03 16 26 O -0.36 -4.90 10.20 -35.23 -0.36 -5.26 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.03 0.53 6.68 -51.93 -0.35 0.19 16 29 H 0.06 1.30 6.95 -51.93 -0.36 0.94 16 30 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.34 5.05 6.98 -39.29 -0.27 4.78 16 36 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.04 0.46 8.03 -51.93 -0.42 0.05 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.08 0.50 8.02 -51.93 -0.42 0.09 16 46 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 362.31 15.07 5.46 5.46 Total: -1.00 -31.18 362.31 -10.77 -41.96 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -8.92 Total: -0.76 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: -0.85 Total: -14.18 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: -1.08 Total: -44.23 kcal Atomic # 8 Polarization: -4.90 SS G_CDS: -0.36 Total: -5.26 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.18 -10.77 -41.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877022146.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.270 kcal (2) G-P(sol) polarization free energy of solvation -31.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds