Wall clock time and date at job start Tue Mar 31 2020 05:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47057 * 2 1 4 4 C 1.52997 * 109.47298 * 239.99751 * 2 1 3 5 5 C 1.50705 * 109.46861 * 65.00292 * 4 2 1 6 6 H 1.07998 * 120.00044 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99690 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99763 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00304 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47073 * 89.99630 * 9 7 5 11 11 H 1.48495 * 109.47045 * 209.99985 * 9 7 5 12 12 H 1.48504 * 109.47042 * 329.99671 * 9 7 5 13 13 C 1.53004 * 109.46763 * 119.99768 * 2 1 3 14 14 N 1.46898 * 109.47490 * 294.99899 * 13 2 1 15 15 C 1.46890 * 111.00010 * 180.02562 * 14 13 2 16 16 C 1.53001 * 109.47058 * 179.97438 * 15 14 13 17 17 H 1.08999 * 109.18330 * 304.30034 * 16 15 14 18 18 C 1.53784 * 109.18440 * 184.99779 * 16 15 14 19 19 N 1.45477 * 107.45013 * 293.69175 * 18 16 15 20 20 C 1.46111 * 118.11542 * 177.22221 * 19 18 16 21 21 C 1.54915 * 105.80613 * 152.43121 * 20 19 18 22 22 C 1.55432 * 104.96051 * 355.94560 * 21 20 19 23 23 C 1.48971 * 109.15316 * 297.46613 * 19 18 16 24 24 H 1.08993 * 111.14683 * 305.82394 * 23 19 18 25 25 C 1.52265 * 106.86078 * 67.68245 * 23 19 18 26 26 O 1.42655 * 109.14160 * 63.57842 * 16 15 14 27 27 H 1.09003 * 109.47496 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47426 * 300.00123 * 1 2 3 29 29 H 1.08999 * 109.47181 * 59.99931 * 1 2 3 30 30 H 1.08996 * 109.47194 * 184.99875 * 4 2 1 31 31 H 1.08997 * 109.47197 * 305.00019 * 4 2 1 32 32 H 0.96992 * 119.99933 * 179.97438 * 8 7 5 33 33 H 1.09003 * 109.46914 * 174.99621 * 13 2 1 34 34 H 1.09003 * 109.47211 * 55.00468 * 13 2 1 35 35 H 1.00902 * 110.99671 * 56.04853 * 14 13 2 36 36 H 1.08997 * 109.47407 * 60.00570 * 15 14 13 37 37 H 1.09001 * 109.47290 * 300.00028 * 15 14 13 38 38 H 1.09003 * 109.85982 * 174.20497 * 18 16 15 39 39 H 1.08998 * 109.91792 * 53.21143 * 18 16 15 40 40 H 1.09002 * 110.18157 * 33.34872 * 20 19 18 41 41 H 1.08992 * 110.24803 * 271.54862 * 20 19 18 42 42 H 1.08999 * 110.34045 * 237.07828 * 21 20 19 43 43 H 1.08997 * 110.34472 * 114.81672 * 21 20 19 44 44 H 1.09002 * 110.93393 * 95.85725 * 22 21 20 45 45 H 1.09003 * 110.93165 * 219.49166 * 22 21 20 46 46 H 1.09004 * 109.87708 * 179.31980 * 25 23 19 47 47 H 1.09004 * 110.00115 * 58.20966 * 25 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0571 -2.4765 6 1 1.0800 0.9742 -2.3757 7 6 1.9933 -0.4017 -3.7282 8 7 1.6450 0.2773 -4.7994 9 14 2.9637 -1.9884 -3.9027 10 1 2.0244 -3.1326 -4.0200 11 1 3.8127 -1.9181 -5.1190 12 1 3.8253 -2.1756 -2.7078 13 6 2.0399 -0.7212 1.2493 14 7 1.6513 0.0374 2.4457 15 6 2.1256 -0.6265 3.6671 16 6 1.7033 0.1916 4.8891 17 1 2.0758 1.2106 4.7841 18 6 2.3087 -0.4399 6.1539 19 7 1.6867 -1.7430 6.3314 20 6 2.1414 -2.5776 7.4411 21 6 0.9349 -3.4735 7.8172 22 6 -0.2255 -2.9880 6.9042 23 6 0.2240 -1.5610 6.5477 24 1 0.0308 -0.8733 7.3708 25 6 -0.3547 -1.0413 5.2387 26 8 0.2790 0.2186 4.9645 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 3.1263 -0.7995 -1.2055 31 1 1.6054 -1.7198 -1.2951 32 1 1.8929 -0.0453 -5.6799 33 1 3.1262 -0.7995 1.2057 34 1 1.6053 -1.7198 1.2952 35 1 0.6527 0.1793 2.4753 36 1 3.2125 -0.7036 3.6401 37 1 1.6919 -1.6245 3.7301 38 1 2.1008 0.1905 7.0185 39 1 3.3854 -0.5571 6.0315 40 1 2.4254 -1.9540 8.2888 41 1 2.9845 -3.1938 7.1289 42 1 0.6739 -3.3367 8.8666 43 1 1.1629 -4.5202 7.6160 44 1 -0.3026 -3.6068 6.0102 45 1 -1.1697 -2.9742 7.4486 46 1 -1.4311 -0.9014 5.3390 47 1 -0.1456 -1.7451 4.4331 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877022149.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:06 Heat of formation + Delta-G solvation = -69.883858 kcal Electronic energy + Delta-G solvation = -22993.911398 eV Core-core repulsion = 19789.046892 eV Total energy + Delta-G solvation = -3204.864507 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.39570 -38.67495 -37.74125 -35.49144 -34.26572 -33.46261 -31.23262 -30.28682 -29.16610 -27.29305 -25.87897 -25.17504 -23.49244 -22.83721 -21.84034 -20.86976 -20.36563 -18.93230 -17.73906 -17.07443 -17.00535 -16.66238 -16.39104 -16.14026 -15.67141 -15.37148 -15.04435 -14.95714 -14.76967 -14.30395 -14.19331 -13.75263 -13.61675 -13.48380 -13.38951 -12.94439 -12.75429 -12.60145 -12.45981 -12.23092 -12.10391 -12.08144 -12.03166 -11.70872 -11.55220 -11.46766 -11.34147 -11.18726 -11.06169 -10.72982 -10.57578 -9.42805 -9.18472 -8.25175 -6.27481 1.36153 1.38213 1.50260 2.38626 2.68353 2.92641 3.09870 3.27156 3.56886 3.77689 3.84171 4.01821 4.13857 4.16598 4.18694 4.22747 4.27936 4.31936 4.41183 4.49063 4.57181 4.64053 4.65798 4.67705 4.76210 4.83107 4.85567 4.88580 4.98525 4.99144 4.99856 5.04998 5.12732 5.20232 5.28269 5.30331 5.37850 5.55123 5.70086 5.73794 5.84761 6.13610 6.18314 6.28834 6.36239 6.53384 6.80007 7.35922 8.91720 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029601 B = 0.003066 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.682971 B = 9130.633646 C = 9380.649182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.071 4.071 3 H 0.052 0.948 4 C -0.005 4.005 5 C -0.519 4.519 6 H 0.034 0.966 7 C 0.001 3.999 8 N -0.954 5.954 9 Si 0.949 3.051 10 H -0.267 1.267 11 H -0.285 1.285 12 H -0.248 1.248 13 C 0.077 3.923 14 N -0.691 5.691 15 C 0.045 3.955 16 C 0.103 3.897 17 H 0.111 0.889 18 C 0.039 3.961 19 N -0.551 5.551 20 C 0.049 3.951 21 C -0.123 4.123 22 C -0.111 4.111 23 C 0.032 3.968 24 H 0.060 0.940 25 C 0.070 3.930 26 O -0.395 6.395 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.035 0.965 30 H 0.016 0.984 31 H 0.016 0.984 32 H 0.265 0.735 33 H 0.065 0.935 34 H 0.027 0.973 35 H 0.343 0.657 36 H 0.076 0.924 37 H 0.037 0.963 38 H 0.045 0.955 39 H 0.094 0.906 40 H 0.041 0.959 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.072 0.928 45 H 0.088 0.912 46 H 0.109 0.891 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.088 -8.170 30.425 31.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.090 4.090 3 H 0.071 0.929 4 C -0.043 4.043 5 C -0.557 4.557 6 H 0.053 0.947 7 C -0.195 4.195 8 N -0.596 5.596 9 Si 0.773 3.227 10 H -0.193 1.193 11 H -0.211 1.211 12 H -0.171 1.171 13 C -0.052 4.052 14 N -0.324 5.324 15 C -0.084 4.084 16 C 0.045 3.955 17 H 0.128 0.872 18 C -0.090 4.090 19 N -0.277 5.277 20 C -0.078 4.078 21 C -0.161 4.161 22 C -0.149 4.149 23 C -0.076 4.076 24 H 0.078 0.922 25 C -0.006 4.006 26 O -0.314 6.314 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.054 0.946 30 H 0.034 0.966 31 H 0.034 0.966 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.045 0.955 35 H 0.163 0.837 36 H 0.094 0.906 37 H 0.055 0.945 38 H 0.063 0.937 39 H 0.113 0.887 40 H 0.060 0.940 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.090 0.910 45 H 0.107 0.893 46 H 0.127 0.873 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.482 -7.823 29.761 30.776 hybrid contribution -0.128 -0.773 -0.074 0.787 sum -0.610 -8.596 29.688 30.913 Atomic orbital electron populations 1.21640 0.95425 1.00857 1.00561 1.20889 0.95930 0.99029 0.93156 0.92919 1.19548 0.95956 0.95589 0.93217 1.21457 1.34293 1.08682 0.91241 0.94737 1.26010 0.97017 1.01017 0.95494 1.70076 1.49105 1.41682 0.98703 0.85676 0.79351 0.79484 0.78236 1.19255 1.21111 1.17133 1.21865 0.99908 0.94206 0.89222 1.60463 1.20408 1.50166 1.01330 1.22379 1.00684 0.95994 0.89390 1.22350 0.80494 1.00270 0.92411 0.87159 1.22543 1.00337 0.89154 0.96945 1.62741 1.03714 1.16759 1.44530 1.22545 0.98729 0.95319 0.91232 1.22657 0.93665 0.99956 0.99845 1.22314 0.98697 0.93676 1.00202 1.23250 0.88994 0.98111 0.97242 0.92202 1.22672 0.97688 0.85334 0.94900 1.87924 1.19627 1.31837 1.92018 0.93323 0.91980 0.94562 0.96561 0.96583 0.92671 0.91687 0.95523 0.83705 0.90580 0.94521 0.93673 0.88727 0.94026 0.90292 0.90271 0.90235 0.90965 0.89343 0.87272 0.92962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.85 8.77 71.98 0.63 -4.21 16 2 C -0.07 -2.88 2.55 -10.80 -0.03 -2.90 16 3 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 4 C -0.01 -0.25 3.52 29.85 0.10 -0.15 16 5 C -0.52 -30.53 8.96 25.60 0.23 -30.30 16 6 H 0.03 2.24 7.30 -2.91 -0.02 2.21 16 7 C 0.00 0.04 5.47 84.65 0.46 0.50 16 8 N -0.95 -61.24 13.96 21.45 0.30 -60.94 16 9 Si 0.95 45.35 27.47 68.60 1.88 47.23 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 12 H -0.25 -11.02 6.54 99.48 0.65 -10.37 16 13 C 0.08 2.54 5.14 86.30 0.44 2.98 16 14 N -0.69 -19.92 6.50 -513.90 -3.34 -23.26 16 15 C 0.04 1.06 4.88 86.31 0.42 1.48 16 16 C 0.10 2.13 3.48 30.86 0.11 2.24 16 17 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 18 C 0.04 0.66 5.48 86.84 0.48 1.13 16 19 N -0.55 -9.16 4.13 -865.77 -3.57 -12.74 16 20 C 0.05 0.64 6.89 87.11 0.60 1.24 16 21 C -0.12 -1.27 6.99 32.09 0.22 -1.05 16 22 C -0.11 -1.30 6.63 31.70 0.21 -1.09 16 23 C 0.03 0.49 2.79 44.54 0.12 0.62 16 24 H 0.06 0.96 8.10 -2.39 -0.02 0.94 16 25 C 0.07 1.29 6.30 71.74 0.45 1.74 16 26 O -0.40 -8.96 9.93 -148.98 -1.48 -10.44 16 27 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.06 2.01 6.68 -2.39 -0.02 1.99 16 29 H 0.04 1.58 6.95 -2.39 -0.02 1.56 16 30 H 0.02 0.77 7.20 -2.39 -0.02 0.75 16 31 H 0.02 0.74 7.57 -2.39 -0.02 0.73 16 32 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 33 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.34 9.95 6.48 -89.69 -0.58 9.37 16 36 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.04 0.92 6.39 -2.39 -0.02 0.90 16 38 H 0.05 0.73 8.10 -2.39 -0.02 0.72 16 39 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.04 0.51 8.07 -2.39 -0.02 0.49 16 41 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.07 0.95 8.12 -2.39 -0.02 0.94 16 45 H 0.09 0.77 8.14 -2.39 -0.02 0.76 16 46 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.05 1.07 6.80 -2.38 -0.02 1.05 16 Total: -1.00 -67.15 354.35 -1.47 -68.62 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.28 Total: 19.28 kcal Atomic # 6 Polarization: -32.22 SS G_CDS: 4.46 Total: -27.76 kcal Atomic # 7 Polarization: -90.32 SS G_CDS: -6.61 Total: -96.93 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: -1.48 Total: -10.44 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.88 Total: 47.23 kcal Total: -67.15 -1.47 -68.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877022149.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.267 kcal (2) G-P(sol) polarization free energy of solvation -67.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds