Wall clock time and date at job start Tue Mar 31 2020 05:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47194 * 2 1 4 4 C 1.50701 * 109.46808 * 119.99828 * 2 1 3 5 5 H 1.07996 * 119.99997 * 119.99981 * 4 2 1 6 6 C 1.37878 * 119.99748 * 299.99859 * 4 2 1 7 7 N 1.31511 * 120.00349 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99712 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47145 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46784 * 119.99771 * 8 6 4 11 11 H 1.48497 * 109.47132 * 239.99775 * 8 6 4 12 12 N 1.46902 * 109.47078 * 239.99348 * 2 1 3 13 13 C 1.46904 * 110.99713 * 85.00292 * 12 2 1 14 14 C 1.50695 * 109.46798 * 179.97438 * 13 12 2 15 15 O 1.21274 * 120.00413 * 0.27179 * 14 13 12 16 16 N 1.34784 * 119.99635 * 180.02562 * 14 13 12 17 17 C 1.46499 * 119.99971 * 179.97438 * 16 14 13 18 18 C 1.53014 * 109.47454 * 275.00198 * 17 16 14 19 19 C 1.52985 * 109.46637 * 164.04533 * 18 17 16 20 20 C 1.52980 * 109.50737 * 315.98769 * 19 18 17 21 21 C 1.53009 * 109.47242 * 112.93615 * 20 19 18 22 22 C 1.53004 * 109.43003 * 284.04411 * 21 20 19 23 23 C 1.52985 * 109.48944 * 75.95631 * 22 21 20 24 24 C 1.52991 * 109.50627 * 247.06720 * 23 22 21 25 25 H 1.08999 * 109.47194 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47363 * 300.00164 * 1 2 3 27 27 H 1.09007 * 109.46847 * 60.00462 * 1 2 3 28 28 H 0.97003 * 120.00140 * 180.02562 * 7 6 4 29 29 H 1.00901 * 111.00042 * 321.05142 * 12 2 1 30 30 H 1.09005 * 109.47078 * 59.99805 * 13 12 2 31 31 H 1.09002 * 109.47005 * 300.00021 * 13 12 2 32 32 H 0.96999 * 120.00044 * 0.02562 * 16 14 13 33 33 H 1.09007 * 109.47230 * 34.99566 * 17 16 14 34 34 H 1.08998 * 109.47306 * 284.04719 * 18 17 16 35 35 H 1.09006 * 109.47251 * 44.04443 * 18 17 16 36 36 H 1.08999 * 109.46507 * 195.97932 * 19 18 17 37 37 H 1.08997 * 109.45953 * 75.99031 * 19 18 17 38 38 H 1.08999 * 109.47667 * 352.93155 * 20 19 18 39 39 H 1.08999 * 109.47522 * 232.93200 * 20 19 18 40 40 H 1.09002 * 109.48343 * 164.05678 * 21 20 19 41 41 H 1.08998 * 109.48302 * 44.02841 * 21 20 19 42 42 H 1.09005 * 109.46879 * 315.95685 * 22 21 20 43 43 H 1.09002 * 109.46687 * 195.96279 * 22 21 20 44 44 H 1.08997 * 109.46378 * 127.05502 * 23 22 21 45 45 H 1.09007 * 109.46082 * 7.07935 * 23 22 21 46 46 H 1.09000 * 109.47504 * 284.01312 * 24 23 22 47 47 H 1.09007 * 109.47293 * 164.00955 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6991 -0.2392 2.4827 7 7 0.9427 0.8298 2.6034 8 14 2.3223 -1.1194 4.0081 9 1 3.1482 -2.2855 3.6040 10 1 3.1471 -0.1856 4.8161 11 1 1.1676 -1.5863 4.8166 12 7 2.0197 -0.6926 -1.1994 13 6 2.0825 0.2224 -2.3469 14 6 2.5885 -0.5218 -3.5556 15 8 2.8645 -1.6997 -3.4709 16 7 2.7297 0.1205 -4.7321 17 6 3.2222 -0.6028 -5.9071 18 6 4.7522 -0.6122 -5.8960 19 6 5.2626 -1.6769 -6.8689 20 6 4.4459 -2.9590 -6.6975 21 6 3.6177 -3.2088 -7.9596 22 6 2.4199 -2.2570 -7.9791 23 6 2.8889 -0.8544 -8.3702 24 6 2.7255 0.0900 -7.1777 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 0.7086 1.1615 3.4844 29 1 1.4495 -1.4980 -1.4099 30 1 2.7589 1.0461 -2.1182 31 1 1.0871 0.6161 -2.5525 32 1 2.5059 1.0618 -4.8007 33 1 2.8525 -1.6280 -5.8840 34 1 5.1238 0.3662 -6.2005 35 1 5.1070 -0.8388 -4.8905 36 1 6.3124 -1.8846 -6.6621 37 1 5.1586 -1.3141 -7.8915 38 1 3.7800 -2.8540 -5.8409 39 1 5.1197 -3.7998 -6.5329 40 1 3.2630 -4.2395 -7.9636 41 1 4.2355 -3.0336 -8.8404 42 1 1.9652 -2.2250 -6.9890 43 1 1.6869 -2.6104 -8.7044 44 1 2.2906 -0.4912 -9.2058 45 1 3.9381 -0.8909 -8.6636 46 1 1.6734 0.3505 -7.0619 47 1 3.3074 0.9957 -7.3489 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878816100.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:56 Heat of formation + Delta-G solvation = -45.563739 kcal Electronic energy + Delta-G solvation = -23061.995483 eV Core-core repulsion = 19858.185575 eV Total energy + Delta-G solvation = -3203.809907 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.27279 -38.49177 -35.69714 -34.58482 -33.01673 -32.46547 -31.55944 -29.09958 -26.53589 -26.11312 -25.16730 -24.38208 -22.10143 -21.06282 -20.27127 -20.03227 -19.53204 -17.12303 -16.72463 -16.00775 -15.39742 -14.93518 -14.66213 -14.60803 -14.33465 -14.28575 -13.84331 -13.46208 -13.33624 -13.17853 -12.62339 -12.55788 -12.08838 -11.88042 -11.62606 -11.61106 -11.46388 -11.32175 -11.27955 -10.94171 -10.92703 -10.75981 -10.60732 -10.50518 -10.21581 -10.13068 -9.94110 -9.89057 -9.39828 -8.93665 -8.82861 -8.34164 -7.21243 -5.96478 -3.98777 3.03661 3.33565 3.34887 3.42390 3.49800 4.37424 4.48107 4.61223 4.67874 4.85258 4.92251 5.00045 5.04674 5.06673 5.18291 5.23722 5.35447 5.42705 5.48688 5.52440 5.67340 5.70518 5.75446 5.80352 5.84386 5.90336 5.92851 5.94744 5.97301 6.08270 6.13224 6.19986 6.34442 6.45817 6.66795 6.68441 6.83995 7.07625 7.30656 7.71241 7.75085 7.92425 8.27472 8.53496 8.57878 8.66039 9.09832 9.66595 11.10873 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031482 B = 0.003141 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.194964 B = 8912.727147 C = 9254.825554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.211 3.789 3 H 0.034 0.966 4 C -0.492 4.492 5 H 0.065 0.935 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.286 1.286 12 N -0.667 5.667 13 C 0.043 3.957 14 C 0.513 3.487 15 O -0.525 6.525 16 N -0.738 5.738 17 C 0.124 3.876 18 C -0.129 4.129 19 C -0.121 4.121 20 C -0.136 4.136 21 C -0.118 4.118 22 C -0.133 4.133 23 C -0.123 4.123 24 C -0.127 4.127 25 H 0.029 0.971 26 H 0.090 0.910 27 H 0.004 0.996 28 H 0.259 0.741 29 H 0.335 0.665 30 H 0.092 0.908 31 H 0.046 0.954 32 H 0.395 0.605 33 H 0.112 0.888 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.074 0.926 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.075 0.925 46 H 0.067 0.933 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.611 -0.464 -23.456 23.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.104 3.896 3 H 0.052 0.948 4 C -0.531 4.531 5 H 0.083 0.917 6 C -0.146 4.146 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.212 1.212 12 N -0.299 5.299 13 C -0.091 4.091 14 C 0.300 3.700 15 O -0.399 6.399 16 N -0.391 5.391 17 C 0.020 3.980 18 C -0.168 4.168 19 C -0.159 4.159 20 C -0.173 4.173 21 C -0.155 4.155 22 C -0.170 4.170 23 C -0.160 4.160 24 C -0.165 4.165 25 H 0.048 0.952 26 H 0.109 0.891 27 H 0.023 0.977 28 H 0.068 0.932 29 H 0.153 0.847 30 H 0.110 0.890 31 H 0.064 0.936 32 H 0.229 0.771 33 H 0.129 0.871 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.094 0.906 46 H 0.085 0.915 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.404 -1.149 -23.056 23.501 hybrid contribution -0.783 0.363 0.638 1.073 sum 3.621 -0.786 -22.419 22.723 Atomic orbital electron populations 1.22456 1.00662 0.99376 1.00469 1.19231 0.89611 0.94411 0.86375 0.94799 1.21208 1.29990 1.12444 0.89434 0.91700 1.24947 0.95359 0.95239 0.99059 1.69888 1.37524 1.23330 1.23224 0.86434 0.78510 0.79715 0.82728 1.19648 1.21168 1.21217 1.60573 1.58979 1.08335 1.01973 1.21808 0.99811 0.96927 0.90514 1.21059 0.77088 0.87898 0.83996 1.90658 1.48939 1.16057 1.84257 1.46198 1.68979 1.13982 1.09974 1.21603 0.93797 0.98704 0.83920 1.22013 0.95428 0.98843 1.00532 1.21780 0.99234 0.95239 0.99649 1.21889 0.99298 0.97389 0.98767 1.21702 0.96774 0.99060 0.97989 1.21866 0.97962 0.94896 1.02263 1.21797 1.02231 0.94862 0.97159 1.21897 1.01555 0.98720 0.94294 0.95190 0.89103 0.97715 0.93161 0.84723 0.88965 0.93631 0.77122 0.87076 0.92167 0.91307 0.92294 0.91138 0.89808 0.92305 0.92254 0.92032 0.90786 0.92280 0.92050 0.90629 0.91459 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.10 8.94 37.16 0.33 -3.77 16 2 C 0.21 5.36 2.57 -68.86 -0.18 5.19 16 3 H 0.03 0.92 7.80 -51.93 -0.41 0.52 16 4 C -0.49 -13.95 8.84 -34.44 -0.30 -14.25 16 5 H 0.06 1.89 7.81 -52.49 -0.41 1.48 16 6 C 0.05 1.52 5.30 -17.82 -0.09 1.43 16 7 N -0.90 -25.83 11.32 55.43 0.63 -25.20 16 8 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 9 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 N -0.67 -14.95 5.86 -109.21 -0.64 -15.59 16 13 C 0.04 0.75 5.96 -4.98 -0.03 0.72 16 14 C 0.51 8.47 7.76 -10.98 -0.09 8.39 16 15 O -0.52 -10.56 15.86 5.56 0.09 -10.48 16 16 N -0.74 -8.92 5.08 -53.80 -0.27 -9.19 16 17 C 0.12 1.34 1.86 -67.92 -0.13 1.22 16 18 C -0.13 -1.40 5.30 -26.73 -0.14 -1.54 16 19 C -0.12 -1.14 5.48 -26.75 -0.15 -1.28 16 20 C -0.14 -1.39 5.47 -26.74 -0.15 -1.54 16 21 C -0.12 -0.99 5.59 -26.72 -0.15 -1.14 16 22 C -0.13 -1.11 5.47 -26.74 -0.15 -1.26 16 23 C -0.12 -0.90 5.48 -26.74 -0.15 -1.05 16 24 C -0.13 -1.03 5.18 -26.73 -0.14 -1.17 16 25 H 0.03 0.70 8.13 -51.93 -0.42 0.28 16 26 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 27 H 0.00 0.08 7.45 -51.93 -0.39 -0.30 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.74 16 29 H 0.33 7.53 8.17 -39.29 -0.32 7.21 16 30 H 0.09 1.57 8.06 -51.93 -0.42 1.15 16 31 H 0.05 0.75 7.44 -51.93 -0.39 0.36 16 32 H 0.40 3.73 8.60 -40.82 -0.35 3.38 16 33 H 0.11 1.40 2.26 -51.93 -0.12 1.29 16 34 H 0.06 0.57 7.82 -51.93 -0.41 0.17 16 35 H 0.07 0.95 8.06 -51.93 -0.42 0.53 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.56 4.69 -51.93 -0.24 0.31 16 38 H 0.08 1.08 5.47 -51.93 -0.28 0.80 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.45 7.47 -51.93 -0.39 0.07 16 42 H 0.07 0.75 5.47 -51.93 -0.28 0.47 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.08 0.53 4.69 -51.92 -0.24 0.29 16 46 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.07 0.48 7.82 -51.92 -0.41 0.07 16 LS Contribution 348.64 15.07 5.25 5.25 Total: -1.00 -30.90 348.64 -9.34 -40.25 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -7.88 Total: 8.16 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: -1.50 Total: -10.06 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: -0.29 Total: -49.99 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.48 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.90 -9.34 -40.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878816100.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.316 kcal (2) G-P(sol) polarization free energy of solvation -30.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds