Wall clock time and date at job start Tue Mar 31 2020 05:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.47470 * 2 1 4 4 C 1.53002 * 109.47157 * 240.00803 * 2 1 3 5 5 C 1.53002 * 109.47260 * 174.99946 * 4 2 1 6 6 H 1.08999 * 110.21847 * 304.52475 * 5 4 2 7 7 C 1.54484 * 110.24698 * 182.49568 * 5 4 2 8 8 C 1.54624 * 101.76286 * 215.58300 * 7 5 4 9 9 C 1.51281 * 104.20087 * 24.80203 * 8 7 5 10 10 O 1.21279 * 124.94630 * 164.01180 * 9 8 7 11 11 N 1.34424 * 110.11017 * 343.74403 * 9 8 7 12 12 N 1.46898 * 109.47180 * 120.00520 * 2 1 3 13 13 C 1.46904 * 110.99973 * 274.99732 * 12 2 1 14 14 C 1.52992 * 109.46981 * 179.97438 * 13 12 2 15 15 C 1.53002 * 109.47595 * 300.00345 * 14 13 12 16 16 C 1.53000 * 109.47237 * 60.00634 * 14 13 12 17 17 C 1.53002 * 109.46928 * 180.02562 * 14 13 12 18 18 C 1.50697 * 109.47384 * 180.02562 * 17 14 13 19 19 H 1.08002 * 119.99694 * 359.97438 * 18 17 14 20 20 C 1.37875 * 120.00739 * 179.97438 * 18 17 14 21 21 N 1.31511 * 120.00484 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 119.99493 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47281 * 90.00077 * 22 20 18 24 24 H 1.48506 * 109.46889 * 210.00155 * 22 20 18 25 25 H 1.48501 * 109.47002 * 329.99871 * 22 20 18 26 26 H 1.09002 * 109.47190 * 59.99356 * 1 2 3 27 27 H 1.08998 * 109.46966 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47084 * 299.99473 * 1 2 3 29 29 H 1.08993 * 109.47537 * 54.99462 * 4 2 1 30 30 H 1.09000 * 109.46876 * 294.99514 * 4 2 1 31 31 H 1.09000 * 110.96838 * 333.70921 * 7 5 4 32 32 H 1.09000 * 110.96325 * 97.42965 * 7 5 4 33 33 H 1.09000 * 110.48926 * 266.12016 * 8 7 5 34 34 H 1.09001 * 110.48194 * 143.48372 * 8 7 5 35 35 H 0.97006 * 124.34522 * 179.61209 * 11 9 8 36 36 H 1.00893 * 111.00260 * 38.95280 * 12 2 1 37 37 H 1.08998 * 109.47044 * 300.00233 * 13 12 2 38 38 H 1.09007 * 109.46595 * 60.00109 * 13 12 2 39 39 H 1.08997 * 109.46653 * 59.99831 * 15 14 13 40 40 H 1.08991 * 109.47298 * 180.02562 * 15 14 13 41 41 H 1.09004 * 109.46637 * 300.00188 * 15 14 13 42 42 H 1.08998 * 109.47276 * 59.99279 * 16 14 13 43 43 H 1.09004 * 109.47509 * 179.97438 * 16 14 13 44 44 H 1.09004 * 109.46675 * 299.99785 * 16 14 13 45 45 H 1.09004 * 109.47319 * 299.99799 * 17 14 13 46 46 H 1.08994 * 109.47509 * 60.00284 * 17 14 13 47 47 H 0.97004 * 120.00110 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5648 -0.6131 -1.3138 6 1 3.8703 0.4326 -1.2771 7 6 4.0941 -1.2818 -2.6019 8 6 5.4267 -1.8957 -2.1137 9 6 5.2255 -2.0840 -0.6262 10 8 5.9157 -2.7830 0.0852 11 7 4.1740 -1.3593 -0.2065 12 7 2.0196 -0.6926 1.1994 13 6 2.0825 0.2224 2.3469 14 6 2.5950 -0.5334 3.5743 15 6 1.6452 -1.6892 3.8951 16 6 3.9922 -1.0865 3.2861 17 6 2.6599 0.4194 4.7697 18 6 3.1653 -0.3248 5.9786 19 1 3.4149 -1.3728 5.9021 20 6 3.3092 0.3319 7.1823 21 7 3.7498 -0.3178 8.2374 22 14 2.8782 2.1448 7.3144 23 1 1.4488 2.2876 7.6908 24 1 3.7292 2.7816 8.3515 25 1 3.1140 2.8062 6.0059 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.6053 -0.2616 -2.1370 30 1 1.7517 -1.7714 -1.2058 31 1 3.4108 -2.0573 -2.9479 32 1 4.2680 -0.5413 -3.3826 33 1 6.2539 -1.2117 -2.3032 34 1 5.6050 -2.8552 -2.5990 35 1 3.8587 -1.3327 0.7104 36 1 1.4496 -1.4980 1.4099 37 1 2.7589 1.0460 2.1182 38 1 1.0870 0.6161 2.5525 39 1 1.5986 -2.3681 3.0436 40 1 2.0101 -2.2274 4.7698 41 1 0.6499 -1.2952 4.1004 42 1 4.6689 -0.2631 3.0576 43 1 4.3576 -1.6246 4.1607 44 1 3.9455 -1.7654 2.4346 45 1 3.3365 1.2431 4.5415 46 1 1.6645 0.8131 4.9750 47 1 3.8507 0.1443 9.0844 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926426625.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:04 Heat of formation + Delta-G solvation = -59.030027 kcal Electronic energy + Delta-G solvation = -23707.888345 eV Core-core repulsion = 20503.494496 eV Total energy + Delta-G solvation = -3204.393849 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.29156 -38.31564 -36.74232 -35.34010 -32.45416 -31.15603 -30.85026 -28.93123 -27.54206 -26.44326 -25.46269 -24.64324 -22.09971 -21.32661 -20.91618 -20.15795 -17.94138 -17.14284 -16.79112 -16.44491 -15.47200 -15.12894 -14.78153 -14.34708 -14.13381 -13.61291 -13.52124 -13.42396 -13.39430 -13.15739 -12.85641 -12.58106 -12.53789 -12.31385 -12.16874 -11.88947 -11.72817 -11.22855 -11.14227 -11.11840 -10.92628 -10.86949 -10.81346 -10.53140 -10.36706 -9.86486 -9.69326 -9.63066 -9.32457 -8.91927 -8.82180 -8.49567 -8.32144 -5.99259 -3.95754 2.82872 3.31241 3.39437 3.42117 3.68616 4.22949 4.25982 4.40845 4.48044 4.48284 4.85866 4.94295 4.99566 5.20555 5.25755 5.32933 5.33035 5.43557 5.49070 5.52129 5.56422 5.61411 5.68937 5.74066 5.78001 5.82015 5.94518 6.03923 6.12732 6.18494 6.34258 6.49939 6.64469 6.75831 7.00520 7.09229 7.12439 7.19654 7.21269 7.29264 7.40363 7.47941 7.55779 7.84927 8.59962 8.64153 9.06913 9.63399 11.13859 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019940 B = 0.004469 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.865149 B = 6264.083033 C = 7062.703922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.077 3.923 3 H 0.079 0.921 4 C -0.117 4.117 5 C 0.137 3.863 6 H 0.074 0.926 7 C -0.131 4.131 8 C -0.160 4.160 9 C 0.506 3.494 10 O -0.543 6.543 11 N -0.710 5.710 12 N -0.686 5.686 13 C 0.064 3.936 14 C -0.050 4.050 15 C -0.131 4.131 16 C -0.119 4.119 17 C -0.003 4.003 18 C -0.508 4.508 19 H 0.078 0.922 20 C 0.065 3.935 21 N -0.904 5.904 22 Si 0.876 3.124 23 H -0.279 1.279 24 H -0.289 1.289 25 H -0.267 1.267 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.430 0.570 36 H 0.345 0.655 37 H 0.067 0.933 38 H 0.029 0.971 39 H 0.035 0.965 40 H 0.071 0.929 41 H 0.040 0.960 42 H 0.040 0.960 43 H 0.065 0.935 44 H 0.040 0.960 45 H 0.014 0.986 46 H 0.008 0.992 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.420 1.306 -24.181 24.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.034 4.034 3 H 0.097 0.903 4 C -0.156 4.156 5 C 0.031 3.969 6 H 0.092 0.908 7 C -0.169 4.169 8 C -0.201 4.201 9 C 0.291 3.709 10 O -0.421 6.421 11 N -0.376 5.376 12 N -0.319 5.319 13 C -0.064 4.064 14 C -0.051 4.051 15 C -0.189 4.189 16 C -0.176 4.176 17 C -0.041 4.041 18 C -0.546 4.546 19 H 0.096 0.904 20 C -0.135 4.135 21 N -0.544 5.544 22 Si 0.703 3.297 23 H -0.206 1.206 24 H -0.215 1.215 25 H -0.192 1.192 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.117 0.883 34 H 0.113 0.887 35 H 0.283 0.717 36 H 0.165 0.835 37 H 0.085 0.915 38 H 0.048 0.952 39 H 0.054 0.946 40 H 0.090 0.910 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.084 0.916 44 H 0.059 0.941 45 H 0.033 0.967 46 H 0.026 0.974 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.336 1.052 -23.838 24.252 hybrid contribution -1.393 1.264 0.784 2.038 sum -5.729 2.316 -23.054 23.868 Atomic orbital electron populations 1.22459 0.97062 1.02157 1.02241 1.21652 0.92742 0.98236 0.90734 0.90289 1.21979 0.94382 1.01781 0.97427 1.21523 0.93121 0.95957 0.86336 0.90778 1.22702 0.96373 1.00724 0.97103 1.22376 0.99172 1.03554 0.94954 1.20882 0.80521 0.79180 0.90355 1.90756 1.48990 1.40417 1.61951 1.47185 1.30869 1.45754 1.13769 1.60436 1.56379 1.10595 1.04443 1.22226 0.99189 0.94961 0.90068 1.20458 0.95386 0.95893 0.93344 1.21790 0.98430 0.97726 1.00907 1.21669 0.95509 0.99858 1.00575 1.19610 0.96024 0.94874 0.93557 1.21133 1.42926 0.98325 0.92234 0.90386 1.25014 0.94940 0.97682 0.95898 1.69909 1.47159 1.36444 1.00866 0.86851 0.78365 0.86518 0.77920 1.20552 1.21543 1.19194 0.92245 0.92443 0.92387 0.90424 0.91041 0.90149 0.89680 0.88333 0.88659 0.71719 0.83475 0.91459 0.95248 0.94649 0.91027 0.94048 0.94083 0.91621 0.94110 0.96732 0.97378 0.92879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.49 9.16 37.16 0.34 -1.15 16 2 C 0.08 0.70 2.59 -67.71 -0.18 0.52 16 3 H 0.08 0.75 7.80 -51.92 -0.40 0.34 16 4 C -0.12 -0.88 4.59 -26.73 -0.12 -1.00 16 5 C 0.14 1.19 3.50 -67.01 -0.23 0.96 16 6 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 7 C -0.13 -0.88 6.69 -25.10 -0.17 -1.04 16 8 C -0.16 -1.47 6.86 -26.74 -0.18 -1.66 16 9 C 0.51 7.30 8.43 -10.86 -0.09 7.21 16 10 O -0.54 -10.55 18.03 5.56 0.10 -10.45 16 11 N -0.71 -9.09 5.65 -52.76 -0.30 -9.39 16 12 N -0.69 -8.09 2.69 -106.72 -0.29 -8.37 16 13 C 0.06 0.95 4.45 -3.83 -0.02 0.93 16 14 C -0.05 -0.94 0.60 -154.51 -0.09 -1.03 16 15 C -0.13 -2.34 7.89 37.16 0.29 -2.05 16 16 C -0.12 -2.31 7.80 37.16 0.29 -2.02 16 17 C 0.00 -0.07 3.11 -27.88 -0.09 -0.15 16 18 C -0.51 -14.03 8.20 -34.44 -0.28 -14.31 16 19 H 0.08 2.32 5.92 -52.49 -0.31 2.00 16 20 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 21 N -0.90 -27.90 13.96 55.43 0.77 -27.13 16 22 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 25 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 28 H 0.06 0.55 7.45 -51.93 -0.39 0.16 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.48 7.91 -51.93 -0.41 0.07 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.43 6.19 3.74 -40.82 -0.15 6.04 16 36 H 0.34 4.08 6.51 -39.30 -0.26 3.83 16 37 H 0.07 1.02 8.05 -51.93 -0.42 0.60 16 38 H 0.03 0.43 7.44 -51.93 -0.39 0.04 16 39 H 0.03 0.53 6.57 -51.93 -0.34 0.19 16 40 H 0.07 1.48 6.62 -51.93 -0.34 1.14 16 41 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.06 1.46 6.62 -51.93 -0.34 1.11 16 44 H 0.04 0.73 5.67 -51.93 -0.29 0.44 16 45 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 46 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 47 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 352.68 15.07 5.31 5.31 Total: -1.00 -32.53 352.68 -7.91 -40.44 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -8.21 Total: 5.52 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: -0.63 Total: -13.02 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: 0.19 Total: -44.89 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.10 Total: -10.45 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.53 -7.91 -40.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926426625.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.590 kcal (2) G-P(sol) polarization free energy of solvation -32.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds