Wall clock time and date at job start Tue Mar 31 2020 05:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47444 * 2 1 4 4 C 1.53005 * 109.46955 * 120.00463 * 2 1 3 5 5 C 1.52998 * 109.46714 * 294.40161 * 4 2 1 6 6 H 1.08993 * 110.21985 * 58.54087 * 5 4 2 7 7 C 1.54831 * 110.24822 * 180.53105 * 5 4 2 8 8 C 1.54624 * 101.60751 * 93.58531 * 7 5 4 9 9 C 1.51286 * 104.31311 * 24.82286 * 8 7 5 10 10 O 1.21278 * 124.94374 * 163.71927 * 9 8 7 11 11 N 1.34419 * 110.10930 * 343.68306 * 9 8 7 12 12 N 1.46902 * 109.47032 * 240.00050 * 2 1 3 13 13 C 1.46903 * 110.99943 * 86.35297 * 12 2 1 14 14 C 1.53001 * 109.47179 * 179.97438 * 13 12 2 15 15 C 1.52995 * 109.47338 * 300.00471 * 14 13 12 16 16 C 1.53003 * 109.46974 * 60.00198 * 14 13 12 17 17 C 1.52999 * 109.47124 * 180.02562 * 14 13 12 18 18 C 1.50699 * 109.46981 * 180.02562 * 17 14 13 19 19 H 1.08001 * 120.00352 * 359.97438 * 18 17 14 20 20 C 1.37877 * 119.99710 * 179.97438 * 18 17 14 21 21 N 1.31522 * 119.99861 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00316 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47458 * 89.99585 * 22 20 18 24 24 H 1.48504 * 109.47252 * 209.99880 * 22 20 18 25 25 H 1.48502 * 109.46774 * 329.99583 * 22 20 18 26 26 H 1.08997 * 109.47210 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46845 * 300.00248 * 1 2 3 28 28 H 1.09000 * 109.46840 * 59.99742 * 1 2 3 29 29 H 1.09001 * 109.46778 * 174.39917 * 4 2 1 30 30 H 1.08999 * 109.47026 * 54.40147 * 4 2 1 31 31 H 1.09004 * 111.08428 * 335.50219 * 7 5 4 32 32 H 1.09010 * 111.00925 * 211.63477 * 7 5 4 33 33 H 1.09001 * 110.48790 * 266.08039 * 8 7 5 34 34 H 1.09003 * 110.49199 * 143.56565 * 8 7 5 35 35 H 0.97010 * 124.34269 * 179.61699 * 11 9 8 36 36 H 1.00899 * 111.00080 * 210.31297 * 12 2 1 37 37 H 1.08998 * 109.47101 * 300.00138 * 13 12 2 38 38 H 1.09003 * 109.46879 * 60.00242 * 13 12 2 39 39 H 1.09000 * 109.47438 * 59.99487 * 15 14 13 40 40 H 1.08993 * 109.47434 * 180.02562 * 15 14 13 41 41 H 1.09003 * 109.47026 * 299.99850 * 15 14 13 42 42 H 1.08998 * 109.47178 * 59.99846 * 16 14 13 43 43 H 1.09003 * 109.46911 * 180.02562 * 16 14 13 44 44 H 1.09000 * 109.46842 * 299.99925 * 16 14 13 45 45 H 1.08998 * 109.46816 * 300.00024 * 17 14 13 46 46 H 1.08993 * 109.47101 * 60.00013 * 17 14 13 47 47 H 0.97001 * 119.99823 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6481 0.0765 2.4945 6 1 0.5655 0.1937 2.5415 7 6 2.1674 -0.6313 3.7698 8 6 3.5258 0.0749 3.9863 9 6 3.3623 1.4166 3.3067 10 8 4.0840 2.3757 3.4803 11 7 2.3012 1.3907 2.4820 12 7 2.0197 -0.6925 -1.1995 13 6 2.1129 0.2301 -2.3388 14 6 2.6258 -0.5255 -3.5664 15 6 4.0088 -1.1069 -3.2664 16 6 1.6583 -1.6608 -3.9073 17 6 2.7235 0.4355 -4.7528 18 6 3.2280 -0.3090 -5.9620 19 1 3.4566 -1.3621 -5.8913 20 6 3.3978 0.3545 -7.1587 21 7 3.8377 -0.2953 -8.2142 22 14 3.0032 2.1762 -7.2810 23 1 4.2161 2.9685 -6.9547 24 1 2.5602 2.4952 -8.6620 25 1 1.9194 2.5132 -6.3233 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 3.1254 -0.8090 1.2005 30 1 1.5971 -1.7160 1.3007 31 1 2.3058 -1.6987 3.5972 32 1 1.4987 -0.4576 4.6130 33 1 4.3301 -0.4937 3.5195 34 1 3.7216 0.2076 5.0504 35 1 2.0053 2.1439 1.9470 36 1 2.9069 -1.1392 -1.0223 37 1 1.1277 0.6446 -2.5522 38 1 2.8025 1.0387 -2.0961 39 1 3.9396 -1.7915 -2.4210 40 1 4.3743 -1.6449 -4.1410 41 1 4.6980 -0.2982 -3.0235 42 1 0.6730 -1.2467 -4.1210 43 1 2.0240 -2.1995 -4.7816 44 1 1.5892 -2.3454 -3.0619 45 1 1.7383 0.8500 -4.9667 46 1 3.4128 1.2440 -4.5097 47 1 3.9575 0.1715 -9.0560 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926426626.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:07 Heat of formation + Delta-G solvation = -61.149635 kcal Electronic energy + Delta-G solvation = -22921.305015 eV Core-core repulsion = 19716.819253 eV Total energy + Delta-G solvation = -3204.485762 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.76956 -38.28420 -37.11255 -35.32053 -32.44515 -31.66960 -30.90305 -28.55375 -27.52350 -26.43622 -26.09186 -24.72521 -22.29554 -21.42618 -21.12382 -20.09447 -17.89527 -17.74663 -16.81008 -16.33045 -15.84216 -15.56812 -14.82357 -14.54387 -14.16564 -14.05712 -13.82806 -13.62539 -13.37694 -13.06475 -12.90639 -12.63986 -12.49674 -12.27823 -12.19593 -11.88073 -11.78993 -11.44165 -11.18302 -11.07408 -10.93460 -10.87426 -10.71725 -10.49492 -10.32226 -10.14438 -9.81858 -9.67841 -9.46822 -9.25482 -8.90162 -8.49715 -8.20730 -6.00171 -3.96325 2.33242 3.05887 3.32113 3.39889 3.43261 3.88442 4.07174 4.17138 4.46951 4.48262 4.60573 4.80916 4.86174 4.99023 5.15455 5.26954 5.30869 5.32902 5.40622 5.52284 5.55505 5.62425 5.66037 5.70153 5.76213 5.86129 5.94931 6.15795 6.22042 6.24471 6.41897 6.50804 6.57925 6.68411 6.73164 6.78997 7.07120 7.13068 7.18053 7.28785 7.32493 7.45799 7.60478 7.85348 7.97096 8.59585 9.05657 9.63070 11.12945 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024633 B = 0.003327 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.420562 B = 8414.382776 C = 8773.397070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.081 3.919 3 H 0.039 0.961 4 C -0.133 4.133 5 C 0.130 3.870 6 H 0.094 0.906 7 C -0.128 4.128 8 C -0.158 4.158 9 C 0.518 3.482 10 O -0.538 6.538 11 N -0.725 5.725 12 N -0.680 5.680 13 C 0.069 3.931 14 C -0.049 4.049 15 C -0.130 4.130 16 C -0.116 4.116 17 C -0.004 4.004 18 C -0.507 4.507 19 H 0.078 0.922 20 C 0.065 3.935 21 N -0.906 5.906 22 Si 0.875 3.125 23 H -0.279 1.279 24 H -0.289 1.289 25 H -0.267 1.267 26 H 0.063 0.937 27 H 0.049 0.951 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.410 0.590 36 H 0.339 0.661 37 H 0.065 0.935 38 H 0.021 0.979 39 H 0.035 0.965 40 H 0.070 0.930 41 H 0.039 0.961 42 H 0.038 0.962 43 H 0.059 0.941 44 H 0.044 0.956 45 H 0.014 0.986 46 H 0.007 0.993 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.480 -2.272 24.541 25.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.029 4.029 3 H 0.057 0.943 4 C -0.172 4.172 5 C 0.024 3.976 6 H 0.112 0.888 7 C -0.166 4.166 8 C -0.198 4.198 9 C 0.304 3.696 10 O -0.415 6.415 11 N -0.381 5.381 12 N -0.313 5.313 13 C -0.060 4.060 14 C -0.049 4.049 15 C -0.188 4.188 16 C -0.173 4.173 17 C -0.042 4.042 18 C -0.545 4.545 19 H 0.096 0.904 20 C -0.136 4.136 21 N -0.545 5.545 22 Si 0.703 3.297 23 H -0.205 1.205 24 H -0.215 1.215 25 H -0.192 1.192 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.105 0.895 31 H 0.112 0.888 32 H 0.102 0.898 33 H 0.123 0.877 34 H 0.119 0.881 35 H 0.249 0.751 36 H 0.159 0.841 37 H 0.084 0.916 38 H 0.039 0.961 39 H 0.054 0.946 40 H 0.088 0.912 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.078 0.922 44 H 0.063 0.937 45 H 0.032 0.968 46 H 0.025 0.975 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.636 -2.074 24.340 25.313 hybrid contribution 0.472 1.915 -0.394 2.011 sum -6.164 -0.160 23.946 24.727 Atomic orbital electron populations 1.21846 0.94717 1.02380 1.00918 1.21486 0.95969 0.95962 0.89486 0.94293 1.22242 1.01587 0.99916 0.93446 1.21804 0.98073 0.82588 0.95100 0.88840 1.22719 0.95947 1.00800 0.97109 1.22346 0.99545 0.94885 1.03014 1.20942 0.79698 0.89748 0.79188 1.90768 1.46945 1.38737 1.65078 1.46367 1.31188 1.14738 1.45803 1.60612 1.34303 1.32274 1.04076 1.22171 0.99872 0.93202 0.90779 1.20419 0.94761 0.96354 0.93401 1.21779 0.96530 0.99676 1.00786 1.21598 0.97801 0.97510 1.00438 1.19625 0.96263 0.94631 0.93693 1.21135 1.42914 0.97783 0.92648 0.90416 1.25018 0.94901 0.97792 0.95876 1.69912 1.47102 1.36304 1.01214 0.86853 0.79166 0.86515 0.77152 1.20508 1.21526 1.19168 0.91837 0.93163 0.92596 0.91505 0.89496 0.88800 0.89841 0.87750 0.88135 0.75141 0.84111 0.91643 0.96062 0.94610 0.91151 0.94225 0.94287 0.92181 0.93666 0.96764 0.97468 0.92889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.21 37.16 0.34 -0.95 16 2 C 0.08 0.80 2.64 -67.71 -0.18 0.62 16 3 H 0.04 0.43 6.95 -51.93 -0.36 0.06 16 4 C -0.13 -0.96 4.34 -26.73 -0.12 -1.07 16 5 C 0.13 0.77 3.32 -66.83 -0.22 0.54 16 6 H 0.09 0.46 6.57 -51.93 -0.34 0.11 16 7 C -0.13 -0.56 6.72 -24.91 -0.17 -0.73 16 8 C -0.16 -1.02 6.85 -26.74 -0.18 -1.21 16 9 C 0.52 5.44 8.43 -10.86 -0.09 5.35 16 10 O -0.54 -8.26 18.03 5.56 0.10 -8.16 16 11 N -0.73 -5.96 5.35 -52.59 -0.28 -6.24 16 12 N -0.68 -8.61 5.52 -106.72 -0.59 -9.20 16 13 C 0.07 1.09 4.44 -3.82 -0.02 1.07 16 14 C -0.05 -0.93 0.60 -154.51 -0.09 -1.02 16 15 C -0.13 -2.36 7.89 37.15 0.29 -2.07 16 16 C -0.12 -2.18 8.06 37.16 0.30 -1.88 16 17 C 0.00 -0.10 3.11 -27.88 -0.09 -0.19 16 18 C -0.51 -13.98 8.20 -34.44 -0.28 -14.27 16 19 H 0.08 2.28 5.92 -52.49 -0.31 1.97 16 20 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 21 N -0.91 -27.82 13.96 55.43 0.77 -27.05 16 22 Si 0.88 21.89 27.47 -169.99 -4.67 17.22 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.35 6.57 -51.93 -0.34 0.01 16 28 H 0.05 0.60 7.54 -51.93 -0.39 0.21 16 29 H 0.07 0.53 8.01 -51.93 -0.42 0.11 16 30 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.09 0.29 7.90 -51.93 -0.41 -0.12 16 32 H 0.08 0.29 8.14 -51.92 -0.42 -0.14 16 33 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.41 3.35 8.58 -40.82 -0.35 3.00 16 36 H 0.34 4.20 6.29 -39.29 -0.25 3.95 16 37 H 0.07 1.07 7.53 -51.93 -0.39 0.67 16 38 H 0.02 0.35 8.05 -51.93 -0.42 -0.07 16 39 H 0.03 0.54 6.57 -51.93 -0.34 0.20 16 40 H 0.07 1.45 6.62 -51.93 -0.34 1.11 16 41 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.06 1.26 6.62 -51.93 -0.34 0.92 16 44 H 0.04 0.75 7.60 -51.93 -0.39 0.36 16 45 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 46 H 0.01 0.17 7.57 -51.93 -0.39 -0.22 16 47 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 357.76 15.07 5.39 5.39 Total: -1.00 -32.69 357.76 -8.17 -40.86 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -8.29 Total: 1.20 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: -0.60 Total: -14.03 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: -0.10 Total: -42.49 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: 0.10 Total: -8.16 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.69 -8.17 -40.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926426626.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.290 kcal (2) G-P(sol) polarization free energy of solvation -32.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds