Wall clock time and date at job start Tue Mar 31 2020 05:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.46901 * 2 1 4 4 C 1.53008 * 109.47287 * 120.00303 * 2 1 3 5 5 C 1.52991 * 109.47143 * 185.00243 * 4 2 1 6 6 H 1.09001 * 110.28676 * 304.47539 * 5 4 2 7 7 C 1.54663 * 110.39971 * 182.47791 * 5 4 2 8 8 C 1.54628 * 101.68539 * 266.73885 * 7 5 4 9 9 C 1.51285 * 104.19604 * 334.98579 * 8 7 5 10 10 O 1.21277 * 124.94201 * 196.27414 * 9 8 7 11 11 N 1.34426 * 110.11504 * 16.24956 * 9 8 7 12 12 N 1.46900 * 109.47274 * 240.00276 * 2 1 3 13 13 C 1.46892 * 111.00228 * 84.99532 * 12 2 1 14 14 C 1.53000 * 109.47510 * 179.97438 * 13 12 2 15 15 C 1.53001 * 109.47349 * 300.00628 * 14 13 12 16 16 C 1.53006 * 109.46598 * 60.00639 * 14 13 12 17 17 C 1.52997 * 109.47373 * 179.97438 * 14 13 12 18 18 C 1.50703 * 109.47325 * 179.97438 * 17 14 13 19 19 H 1.08007 * 119.99549 * 0.02562 * 18 17 14 20 20 C 1.37876 * 120.00471 * 180.02562 * 18 17 14 21 21 N 1.31516 * 119.99550 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00315 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47146 * 90.00194 * 22 20 18 24 24 H 1.48499 * 109.47400 * 210.00127 * 22 20 18 25 25 H 1.48498 * 109.47165 * 330.00401 * 22 20 18 26 26 H 1.08996 * 109.47353 * 299.99730 * 1 2 3 27 27 H 1.08996 * 109.47173 * 60.00026 * 1 2 3 28 28 H 1.09006 * 109.46943 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47047 * 64.99832 * 4 2 1 30 30 H 1.09001 * 109.46323 * 305.00130 * 4 2 1 31 31 H 1.09002 * 111.19063 * 148.56356 * 7 5 4 32 32 H 1.08994 * 110.84984 * 24.76429 * 7 5 4 33 33 H 1.08992 * 110.48523 * 216.30935 * 8 7 5 34 34 H 1.09001 * 110.48504 * 93.66268 * 8 7 5 35 35 H 0.97001 * 124.34628 * 180.40244 * 11 9 8 36 36 H 1.00905 * 110.99563 * 321.04188 * 12 2 1 37 37 H 1.08993 * 109.47594 * 300.00220 * 13 12 2 38 38 H 1.09005 * 109.47196 * 60.00605 * 13 12 2 39 39 H 1.08999 * 109.47131 * 59.99814 * 15 14 13 40 40 H 1.08998 * 109.46833 * 179.97438 * 15 14 13 41 41 H 1.08998 * 109.47018 * 299.99657 * 15 14 13 42 42 H 1.08990 * 109.47539 * 59.99836 * 16 14 13 43 43 H 1.08997 * 109.46790 * 180.02562 * 16 14 13 44 44 H 1.09010 * 109.46755 * 299.99936 * 16 14 13 45 45 H 1.08993 * 109.47739 * 300.00508 * 17 14 13 46 46 H 1.09002 * 109.46703 * 60.01018 * 17 14 13 47 47 H 0.96995 * 119.99735 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6133 1.3137 6 1 4.0100 -0.9977 0.3960 7 6 4.1090 -1.3888 2.5362 8 6 4.1754 -0.2765 3.6084 9 6 4.3058 1.0016 2.8095 10 8 4.6647 2.0688 3.2601 11 7 3.9666 0.7820 1.5274 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2226 -2.3469 14 6 2.5962 -0.5328 -3.5742 15 6 3.9935 -1.0850 -3.2852 16 6 1.6471 -1.6891 -3.8954 17 6 2.6609 0.4202 -4.7694 18 6 3.1676 -0.3237 -5.9781 19 1 3.4180 -1.3716 -5.9015 20 6 3.3115 0.3333 -7.1817 21 7 3.0071 1.6093 -7.2748 22 14 3.9389 -0.5890 -8.6801 23 1 2.7904 -1.1720 -9.4193 24 1 4.6736 0.3487 -9.5668 25 1 4.8514 -1.6769 -8.2455 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.7517 -1.7715 1.2056 30 1 1.6053 -0.2618 2.1369 31 1 5.0997 -1.7964 2.3351 32 1 3.4181 -2.1773 2.8344 33 1 5.0457 -0.4161 4.2494 34 1 3.2613 -0.2638 4.2019 35 1 3.9814 1.4597 0.8336 36 1 1.4495 -1.4979 -1.4100 37 1 1.0871 0.6163 -2.5525 38 1 2.7588 1.0462 -2.1182 39 1 3.9469 -1.7640 -2.4338 40 1 4.3593 -1.6235 -4.1594 41 1 4.6695 -0.2612 -3.0563 42 1 0.6518 -1.2958 -4.1013 43 1 2.0134 -2.2276 -4.7695 44 1 1.6006 -2.3682 -3.0440 45 1 1.6653 0.8132 -4.9752 46 1 3.3368 1.2442 -4.5408 47 1 3.1087 2.0716 -8.1214 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926426627.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:09 Heat of formation + Delta-G solvation = -67.174282 kcal Electronic energy + Delta-G solvation = -23136.968729 eV Core-core repulsion = 19932.221718 eV Total energy + Delta-G solvation = -3204.747011 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.51339 -38.22346 -36.85456 -35.29498 -32.47503 -31.42901 -30.53533 -28.80688 -26.90525 -26.37093 -25.50341 -24.86006 -22.48967 -21.38184 -21.10204 -20.10166 -17.93400 -17.46804 -16.33531 -16.13716 -15.65577 -15.05101 -14.80209 -14.43418 -14.31035 -13.92414 -13.66596 -13.46676 -13.16205 -13.01125 -12.78919 -12.70091 -12.34597 -12.08583 -12.04136 -11.89845 -11.72486 -11.14253 -11.04576 -11.00583 -10.87737 -10.79835 -10.76124 -10.52522 -10.28314 -10.13298 -9.94410 -9.72533 -9.17245 -9.04275 -8.85257 -8.33564 -8.12610 -5.98004 -3.98340 2.52567 3.31707 3.33491 3.38732 3.41174 4.15775 4.30839 4.34057 4.48557 4.59375 4.74640 4.97342 5.05917 5.23426 5.33754 5.37886 5.39577 5.41920 5.55500 5.61052 5.64623 5.72643 5.73369 5.78896 5.91197 5.95769 6.02822 6.09391 6.25845 6.30046 6.46671 6.60657 6.75227 6.76438 6.78845 7.00477 7.17371 7.18570 7.22917 7.35778 7.62654 7.68447 7.82881 8.02069 8.19288 8.46124 9.07143 9.64707 11.13645 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024113 B = 0.003443 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.899639 B = 8130.034889 C = 8456.289656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.079 3.921 3 H 0.074 0.926 4 C -0.115 4.115 5 C 0.135 3.865 6 H 0.108 0.892 7 C -0.130 4.130 8 C -0.157 4.157 9 C 0.516 3.484 10 O -0.546 6.546 11 N -0.720 5.720 12 N -0.680 5.680 13 C 0.070 3.930 14 C -0.058 4.058 15 C -0.115 4.115 16 C -0.128 4.128 17 C 0.034 3.966 18 C -0.507 4.507 19 H 0.059 0.941 20 C 0.055 3.945 21 N -0.897 5.897 22 Si 0.887 3.113 23 H -0.282 1.282 24 H -0.288 1.288 25 H -0.274 1.274 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.410 0.590 36 H 0.339 0.661 37 H 0.023 0.977 38 H 0.063 0.937 39 H 0.042 0.958 40 H 0.053 0.947 41 H 0.038 0.962 42 H 0.039 0.961 43 H 0.063 0.937 44 H 0.033 0.967 45 H 0.011 0.989 46 H 0.014 0.986 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.668 -7.944 19.202 20.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.031 4.031 3 H 0.092 0.908 4 C -0.154 4.154 5 C 0.029 3.971 6 H 0.126 0.874 7 C -0.168 4.168 8 C -0.197 4.197 9 C 0.302 3.698 10 O -0.424 6.424 11 N -0.375 5.375 12 N -0.312 5.312 13 C -0.058 4.058 14 C -0.058 4.058 15 C -0.172 4.172 16 C -0.185 4.185 17 C -0.004 4.004 18 C -0.546 4.546 19 H 0.077 0.923 20 C -0.146 4.146 21 N -0.537 5.537 22 Si 0.716 3.284 23 H -0.208 1.208 24 H -0.214 1.214 25 H -0.199 1.199 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.249 0.751 36 H 0.159 0.841 37 H 0.042 0.958 38 H 0.082 0.918 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.082 0.918 44 H 0.052 0.948 45 H 0.030 0.970 46 H 0.032 0.968 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.810 -7.251 19.564 20.943 hybrid contribution -0.798 0.060 -1.582 1.773 sum -2.608 -7.191 17.982 19.541 Atomic orbital electron populations 1.22483 0.97500 1.01954 1.02111 1.21543 0.92379 0.98136 0.91069 0.90820 1.21992 0.94674 1.01477 0.97273 1.21731 0.94974 0.80601 0.99745 0.87440 1.22713 1.02762 0.97321 0.94010 1.22329 1.04890 0.93679 0.98818 1.20937 0.75678 0.89866 0.83321 1.90746 1.48099 1.29220 1.74285 1.46380 1.67291 1.13066 1.10748 1.60711 1.56585 1.10024 1.03870 1.22117 0.98762 0.94867 0.90090 1.20621 0.94857 0.96108 0.94236 1.21591 0.95907 0.99782 0.99958 1.21762 0.98683 0.97829 1.00265 1.19116 0.96794 0.93672 0.90792 1.21231 1.42878 0.96313 0.94136 0.92313 1.25017 0.95864 0.94824 0.98891 1.69965 1.49210 1.08967 1.25578 0.86669 0.78934 0.79680 0.83166 1.20839 1.21370 1.19905 0.92561 0.92441 0.92517 0.90551 0.91844 0.89935 0.89296 0.88396 0.88141 0.75073 0.84115 0.95849 0.91822 0.93910 0.92749 0.94268 0.94189 0.91796 0.94803 0.97017 0.96762 0.93155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.74 9.16 37.16 0.34 -1.40 16 2 C 0.08 0.79 2.54 -67.71 -0.17 0.62 16 3 H 0.07 0.83 7.14 -51.93 -0.37 0.46 16 4 C -0.12 -0.91 4.50 -26.73 -0.12 -1.03 16 5 C 0.13 1.12 3.42 -66.92 -0.23 0.89 16 6 H 0.11 1.03 7.68 -51.93 -0.40 0.63 16 7 C -0.13 -0.83 6.72 -25.00 -0.17 -1.00 16 8 C -0.16 -1.21 6.85 -26.74 -0.18 -1.39 16 9 C 0.52 6.12 8.43 -10.86 -0.09 6.03 16 10 O -0.55 -8.97 18.03 5.56 0.10 -8.87 16 11 N -0.72 -7.42 5.44 -52.67 -0.29 -7.71 16 12 N -0.68 -8.01 4.87 -106.73 -0.52 -8.53 16 13 C 0.07 1.09 4.44 -3.83 -0.02 1.08 16 14 C -0.06 -1.07 0.60 -154.51 -0.09 -1.17 16 15 C -0.12 -2.07 8.06 37.16 0.30 -1.77 16 16 C -0.13 -2.22 7.89 37.16 0.29 -1.93 16 17 C 0.03 0.83 4.04 -27.88 -0.11 0.71 16 18 C -0.51 -13.60 7.65 -34.44 -0.26 -13.86 16 19 H 0.06 1.53 5.68 -52.48 -0.30 1.23 16 20 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 21 N -0.90 -26.63 13.29 55.43 0.74 -25.90 16 22 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.63 7.45 -51.93 -0.39 0.25 16 28 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.42 7.90 -51.93 -0.41 0.01 16 33 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.41 4.44 8.67 -40.82 -0.35 4.08 16 36 H 0.34 3.93 6.51 -39.29 -0.26 3.67 16 37 H 0.02 0.38 7.44 -51.93 -0.39 0.00 16 38 H 0.06 1.04 8.06 -51.93 -0.42 0.62 16 39 H 0.04 0.66 7.60 -51.93 -0.39 0.27 16 40 H 0.05 1.07 6.62 -51.93 -0.34 0.73 16 41 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 1.23 6.62 -51.93 -0.34 0.89 16 44 H 0.03 0.48 6.57 -51.92 -0.34 0.14 16 45 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 46 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 47 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 364.04 15.07 5.49 5.49 Total: -1.00 -31.02 364.04 -8.61 -39.63 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -8.49 Total: 2.33 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: -0.61 Total: -12.79 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: -0.07 Total: -42.13 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.10 Total: -8.87 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.02 -8.61 -39.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926426627.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.548 kcal (2) G-P(sol) polarization free energy of solvation -31.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds