Wall clock time and date at job start Tue Mar 31 2020 05:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09008 * 109.47055 * 2 1 4 4 C 1.52995 * 109.46958 * 240.00353 * 2 1 3 5 5 C 1.53005 * 109.47072 * 174.99781 * 4 2 1 6 6 H 1.08997 * 110.21387 * 54.30131 * 5 4 2 7 7 C 1.54483 * 110.24750 * 176.22679 * 5 4 2 8 8 C 1.54631 * 101.76351 * 93.58376 * 7 5 4 9 9 C 1.51276 * 104.19396 * 24.79962 * 8 7 5 10 10 O 1.21291 * 124.93980 * 163.75087 * 9 8 7 11 11 N 1.34617 * 110.15220 * 343.76634 * 9 8 7 12 12 N 1.46893 * 109.47466 * 120.00234 * 2 1 3 13 13 C 1.46910 * 110.99767 * 275.00113 * 12 2 1 14 14 C 1.53001 * 109.46736 * 180.02562 * 13 12 2 15 15 C 1.52993 * 109.47423 * 59.99930 * 14 13 12 16 16 C 1.53001 * 109.47283 * 299.99349 * 14 13 12 17 17 C 1.53002 * 109.46852 * 180.02562 * 14 13 12 18 18 C 1.50703 * 109.47207 * 179.97438 * 17 14 13 19 19 H 1.07994 * 119.99603 * 359.97438 * 18 17 14 20 20 C 1.37875 * 119.99838 * 180.02562 * 18 17 14 21 21 N 1.31513 * 120.00380 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99848 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47261 * 239.99776 * 22 20 18 25 25 H 1.48500 * 109.47454 * 119.99769 * 22 20 18 26 26 H 1.08993 * 109.47164 * 60.00187 * 1 2 3 27 27 H 1.09001 * 109.46413 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46736 * 300.00061 * 1 2 3 29 29 H 1.08997 * 109.47207 * 294.99307 * 4 2 1 30 30 H 1.08998 * 109.47569 * 54.99764 * 4 2 1 31 31 H 1.08997 * 110.97182 * 211.70185 * 7 5 4 32 32 H 1.09008 * 110.96612 * 335.43134 * 7 5 4 33 33 H 1.08997 * 110.48175 * 143.48022 * 8 7 5 34 34 H 1.09002 * 110.48662 * 265.98850 * 8 7 5 35 35 H 0.96999 * 124.46621 * 179.54025 * 11 9 8 36 36 H 1.00897 * 111.00417 * 38.94928 * 12 2 1 37 37 H 1.08999 * 109.47206 * 60.00167 * 13 12 2 38 38 H 1.08998 * 109.47077 * 299.99763 * 13 12 2 39 39 H 1.09000 * 109.47074 * 179.97438 * 15 14 13 40 40 H 1.08995 * 109.47527 * 300.00033 * 15 14 13 41 41 H 1.08998 * 109.47142 * 59.99789 * 15 14 13 42 42 H 1.08993 * 109.47330 * 300.00719 * 16 14 13 43 43 H 1.09008 * 109.46541 * 60.00618 * 16 14 13 44 44 H 1.09004 * 109.47445 * 180.02562 * 16 14 13 45 45 H 1.09005 * 109.47493 * 59.99815 * 17 14 13 46 46 H 1.08998 * 109.47006 * 299.99778 * 17 14 13 47 47 H 0.97001 * 119.99667 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5649 -0.6132 -1.3138 6 1 4.0078 -0.9779 -0.3870 7 6 4.1072 -1.4155 -2.5174 8 6 4.1823 -0.3273 -3.6135 9 6 4.3122 0.9676 -2.8423 10 8 4.6760 2.0239 -3.3146 11 7 3.9657 0.7778 -1.5554 12 7 2.0198 -0.6925 1.1993 13 6 2.0826 0.2226 2.3469 14 6 2.5964 -0.5329 3.5741 15 6 3.9937 -1.0850 3.2850 16 6 1.6475 -1.6893 3.8954 17 6 2.6612 0.4200 4.7694 18 6 3.1668 -0.3242 5.9783 19 1 3.4164 -1.3721 5.9018 20 6 3.3095 0.3325 7.1822 21 7 3.0050 1.6085 7.2754 22 14 3.9368 -0.5899 8.6806 23 1 4.2066 -2.0036 8.3146 24 1 2.9125 -0.5440 9.7548 25 1 5.1896 0.0445 9.1638 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.7517 -1.7714 -1.2056 30 1 1.6054 -0.2617 -2.1370 31 1 5.0957 -1.8212 -2.3022 32 1 3.4153 -2.2086 -2.8010 33 1 5.0556 -0.4835 -4.2467 34 1 3.2723 -0.3268 -4.2135 35 1 3.9792 1.4695 -0.8756 36 1 1.4497 -1.4979 1.4100 37 1 1.0872 0.6163 2.5526 38 1 2.7589 1.0462 2.1182 39 1 4.3599 -1.6228 4.1595 40 1 3.9472 -1.7639 2.4336 41 1 4.6697 -0.2611 3.0561 42 1 0.6521 -1.2959 4.1013 43 1 1.6009 -2.3683 3.0439 44 1 2.0133 -2.2273 4.7700 45 1 1.6655 0.8130 4.9752 46 1 3.3370 1.2441 4.5408 47 1 2.6796 2.0875 6.4972 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926426628.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:11 Heat of formation + Delta-G solvation = -71.183551 kcal Electronic energy + Delta-G solvation = -23168.847786 eV Core-core repulsion = 19963.926921 eV Total energy + Delta-G solvation = -3204.920866 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.53890 -38.30893 -36.92729 -35.40371 -32.67940 -31.46143 -30.53961 -28.83713 -26.57949 -26.41380 -25.54255 -24.85137 -22.53473 -21.42724 -21.14580 -20.16251 -18.26038 -17.50542 -16.44498 -16.27832 -15.67713 -15.13967 -14.92054 -14.45798 -14.02872 -13.81149 -13.71915 -13.61474 -13.29422 -13.23198 -12.84200 -12.76982 -12.40597 -12.12791 -12.09881 -11.88719 -11.58062 -11.26458 -11.10265 -11.01746 -10.95940 -10.90498 -10.79806 -10.57956 -10.14319 -10.03163 -9.98184 -9.83621 -9.31680 -9.20569 -8.41948 -8.29229 -8.19747 -6.31252 -3.99349 2.48352 3.29021 3.44378 3.48149 3.60613 4.12524 4.27448 4.28542 4.54015 4.57506 4.70812 4.92917 5.01062 5.18688 5.29451 5.34813 5.38704 5.43400 5.50780 5.53871 5.60377 5.63631 5.69157 5.74303 5.81936 5.88908 5.98165 6.03638 6.16389 6.21078 6.37086 6.51801 6.65686 6.71200 6.72032 6.96235 7.06688 7.08304 7.15218 7.26112 7.39498 7.52236 7.60176 8.15141 8.27731 8.51812 8.93462 9.71508 11.08717 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024174 B = 0.003445 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.981051 B = 8126.521035 C = 8448.443047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.079 3.921 3 H 0.073 0.927 4 C -0.115 4.115 5 C 0.134 3.866 6 H 0.107 0.893 7 C -0.130 4.130 8 C -0.156 4.156 9 C 0.516 3.484 10 O -0.545 6.545 11 N -0.721 5.721 12 N -0.680 5.680 13 C 0.070 3.930 14 C -0.051 4.051 15 C -0.114 4.114 16 C -0.127 4.127 17 C 0.020 3.980 18 C -0.587 4.587 19 H 0.054 0.946 20 C 0.012 3.988 21 N -0.918 5.918 22 Si 1.070 2.930 23 H -0.290 1.290 24 H -0.289 1.289 25 H -0.288 1.288 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.410 0.590 36 H 0.340 0.660 37 H 0.022 0.978 38 H 0.063 0.937 39 H 0.055 0.945 40 H 0.043 0.957 41 H 0.037 0.963 42 H 0.038 0.962 43 H 0.034 0.966 44 H 0.065 0.935 45 H 0.002 0.998 46 H 0.004 0.996 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.612 -8.467 -19.484 21.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.031 4.031 3 H 0.091 0.909 4 C -0.154 4.154 5 C 0.029 3.971 6 H 0.125 0.875 7 C -0.168 4.168 8 C -0.197 4.197 9 C 0.302 3.698 10 O -0.423 6.423 11 N -0.376 5.376 12 N -0.311 5.311 13 C -0.059 4.059 14 C -0.051 4.051 15 C -0.172 4.172 16 C -0.185 4.185 17 C -0.017 4.017 18 C -0.626 4.626 19 H 0.072 0.928 20 C -0.192 4.192 21 N -0.555 5.555 22 Si 0.899 3.101 23 H -0.216 1.216 24 H -0.215 1.215 25 H -0.215 1.215 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.108 0.892 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.249 0.751 36 H 0.159 0.841 37 H 0.041 0.959 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.053 0.947 44 H 0.084 0.916 45 H 0.020 0.980 46 H 0.023 0.977 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.378 -7.765 -18.378 19.999 hybrid contribution -1.517 0.329 -0.977 1.835 sum -2.896 -7.436 -19.356 20.937 Atomic orbital electron populations 1.22484 0.97462 1.01998 1.02109 1.21547 0.92406 0.98112 0.91057 0.90853 1.22002 0.94728 1.01480 0.97219 1.21698 0.94972 0.80646 0.99799 0.87463 1.22683 1.02803 0.97378 0.93922 1.22319 1.04950 0.93557 0.98843 1.20998 0.75638 0.89998 0.83134 1.90750 1.47918 1.30497 1.73087 1.46415 1.67323 1.12931 1.10953 1.60697 1.56646 1.09976 1.03801 1.22128 0.98657 0.94909 0.90222 1.20475 0.95113 0.95905 0.93643 1.21582 0.95695 0.99795 1.00098 1.21753 0.98514 0.97784 1.00417 1.19252 0.95728 0.94198 0.92552 1.22068 1.47229 0.97807 0.95479 0.92824 1.25780 0.95600 0.96559 1.01224 1.70720 1.42061 1.08979 1.33736 0.83527 0.76596 0.74631 0.75315 1.21554 1.21547 1.21483 0.92483 0.92468 0.92516 0.90527 0.91782 0.89943 0.89234 0.88353 0.88098 0.75107 0.84056 0.95934 0.91896 0.92593 0.93767 0.94379 0.94298 0.94666 0.91628 0.97984 0.97731 0.92165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.73 9.16 37.16 0.34 -1.39 16 2 C 0.08 0.79 2.55 -67.72 -0.17 0.61 16 3 H 0.07 0.82 7.20 -51.92 -0.37 0.44 16 4 C -0.12 -0.90 4.49 -26.73 -0.12 -1.02 16 5 C 0.13 1.11 3.42 -67.01 -0.23 0.88 16 6 H 0.11 1.04 7.65 -51.93 -0.40 0.64 16 7 C -0.13 -0.83 6.70 -25.10 -0.17 -0.99 16 8 C -0.16 -1.20 6.86 -26.74 -0.18 -1.38 16 9 C 0.52 6.08 8.44 -10.77 -0.09 5.99 16 10 O -0.54 -8.90 18.03 5.55 0.10 -8.80 16 11 N -0.72 -7.39 5.49 -52.71 -0.29 -7.67 16 12 N -0.68 -8.01 4.85 -106.72 -0.52 -8.53 16 13 C 0.07 1.08 4.45 -3.82 -0.02 1.07 16 14 C -0.05 -0.95 0.60 -154.51 -0.09 -1.05 16 15 C -0.11 -2.08 8.07 37.15 0.30 -1.78 16 16 C -0.13 -2.25 7.89 37.16 0.29 -1.95 16 17 C 0.02 0.49 3.35 -27.88 -0.09 0.40 16 18 C -0.59 -15.92 7.65 -34.44 -0.26 -16.18 16 19 H 0.05 1.43 5.68 -52.49 -0.30 1.13 16 20 C 0.01 0.33 5.46 -17.82 -0.10 0.23 16 21 N -0.92 -27.97 13.65 55.43 0.76 -27.22 16 22 Si 1.07 25.23 29.90 -169.99 -5.08 20.15 16 23 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 28 H 0.06 0.62 7.45 -51.93 -0.39 0.23 16 29 H 0.08 0.53 8.12 -51.93 -0.42 0.11 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.42 7.88 -51.92 -0.41 0.01 16 33 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.41 4.39 8.70 -40.82 -0.36 4.04 16 36 H 0.34 3.95 6.51 -39.29 -0.26 3.69 16 37 H 0.02 0.37 7.44 -51.93 -0.39 -0.02 16 38 H 0.06 1.02 8.05 -51.93 -0.42 0.61 16 39 H 0.06 1.13 6.62 -51.93 -0.34 0.78 16 40 H 0.04 0.69 7.60 -51.93 -0.39 0.30 16 41 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.03 0.51 6.57 -51.92 -0.34 0.17 16 44 H 0.06 1.29 6.61 -51.93 -0.34 0.95 16 45 H 0.00 0.05 8.01 -51.93 -0.42 -0.37 16 46 H 0.00 0.12 8.01 -51.93 -0.42 -0.30 16 47 H 0.27 8.15 7.22 -40.82 -0.29 7.86 16 LS Contribution 362.77 15.07 5.47 5.47 Total: -1.00 -31.66 362.77 -8.59 -40.25 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -8.43 Total: 2.92 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: -0.60 Total: -16.57 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: -0.05 Total: -43.42 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.10 Total: -8.80 kcal Atomic # 14 Polarization: 25.23 SS G_CDS: -5.08 Total: 20.15 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.66 -8.59 -40.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926426628.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.929 kcal (2) G-P(sol) polarization free energy of solvation -31.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds