Wall clock time and date at job start Tue Mar 31 2020 05:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 108.93824 * 2 1 4 4 C 1.50802 * 108.95732 * 118.74923 * 2 1 3 5 5 N 1.47898 * 108.49581 * 213.22486 * 4 2 1 6 6 C 1.46902 * 110.99988 * 153.77922 * 5 4 2 7 7 C 1.52999 * 109.46872 * 291.68280 * 6 5 4 8 8 H 1.09003 * 109.47513 * 59.55114 * 7 6 5 9 9 O 1.42899 * 109.46945 * 299.54797 * 7 6 5 10 10 C 1.50704 * 109.46997 * 179.54828 * 7 6 5 11 11 H 1.08000 * 120.00011 * 359.97438 * 10 7 6 12 12 C 1.37881 * 119.99928 * 179.97438 * 10 7 6 13 13 N 1.31512 * 120.00141 * 0.02562 * 12 10 7 14 14 Si 1.86797 * 119.99995 * 180.02562 * 12 10 7 15 15 H 1.48496 * 109.47101 * 90.00183 * 14 12 10 16 16 H 1.48498 * 109.47234 * 210.00483 * 14 12 10 17 17 H 1.48506 * 109.46988 * 330.00342 * 14 12 10 18 18 C 1.40013 * 114.07145 * 280.06764 * 5 4 2 19 19 C 1.54200 * 112.07936 * 61.80930 * 18 5 4 20 20 N 1.44570 * 108.95711 * 281.12923 * 19 18 5 21 21 C 1.46905 * 110.99884 * 220.41092 * 20 19 18 22 22 C 1.53781 * 113.61208 * 153.54443 * 21 20 19 23 23 C 1.53787 * 87.08116 * 220.01857 * 22 21 20 24 24 C 1.53778 * 113.61564 * 56.04834 * 21 20 19 25 25 C 1.48180 * 113.78862 * 94.08626 * 20 19 18 26 26 H 1.09003 * 109.47019 * 301.25025 * 1 2 3 27 27 H 1.08997 * 109.46881 * 61.24735 * 1 2 3 28 28 H 1.08995 * 109.46894 * 181.24909 * 1 2 3 29 29 H 1.09001 * 109.62872 * 93.51890 * 4 2 1 30 30 H 1.09003 * 109.79471 * 333.02792 * 4 2 1 31 31 H 1.09003 * 109.47233 * 51.67969 * 6 5 4 32 32 H 1.08999 * 109.47620 * 171.67748 * 6 5 4 33 33 H 0.96704 * 114.00332 * 299.99864 * 9 7 6 34 34 H 0.96991 * 120.00369 * 179.97438 * 13 12 10 35 35 H 1.09004 * 108.96166 * 301.13795 * 18 5 4 36 36 H 1.09006 * 108.89071 * 182.43360 * 18 5 4 37 37 H 1.09005 * 109.57513 * 41.00898 * 19 18 5 38 38 H 1.09006 * 109.57550 * 161.25583 * 19 18 5 39 39 H 1.08997 * 112.84792 * 284.85025 * 21 20 19 40 40 H 1.09001 * 113.61915 * 334.56853 * 22 21 20 41 41 H 1.09007 * 113.61443 * 105.47275 * 22 21 20 42 42 H 1.08998 * 113.61309 * 270.88560 * 23 22 21 43 43 H 1.08992 * 113.68665 * 139.99418 * 23 22 21 44 44 H 1.08998 * 113.61561 * 254.52999 * 24 21 20 45 45 H 1.09006 * 113.61236 * 25.34745 * 24 21 20 46 46 H 1.09004 * 108.90085 * 197.67605 * 25 20 19 47 47 H 1.08995 * 108.70887 * 79.21006 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8838 1.0310 0.0000 4 6 2.0200 -0.6860 1.2504 5 7 3.2821 -0.0423 1.6749 6 6 3.4875 -0.1899 3.1220 7 6 2.4434 0.6391 3.8725 8 1 1.4446 0.2951 3.6037 9 8 2.5842 2.0163 3.5182 10 6 2.6472 0.4789 5.3571 11 1 3.4417 -0.1515 5.7281 12 6 1.8193 1.1372 6.2416 13 7 0.8515 1.9045 5.7898 14 14 2.0724 0.9392 8.0817 15 1 3.0097 1.9835 8.5677 16 1 0.7689 1.0809 8.7788 17 1 2.6399 -0.4043 8.3616 18 6 4.4089 -0.4694 0.9620 19 6 4.3023 -0.1420 -0.5410 20 7 3.4462 -1.1194 -1.1750 21 6 3.9776 -1.5125 -2.4870 22 6 3.5521 -2.9235 -2.9262 23 6 4.9812 -3.1010 -3.4659 24 6 5.4177 -2.0489 -2.4328 25 6 2.0293 -0.6973 -1.2755 26 1 -0.3633 0.5331 0.8786 27 1 -0.3633 0.4943 -0.9009 28 1 -0.3633 -1.0274 0.0224 29 1 2.1985 -1.7411 1.0432 30 1 1.2754 -0.5889 2.0406 31 1 3.3853 -1.2394 3.3983 32 1 4.4861 0.1593 3.3847 33 1 3.4508 2.3901 3.7292 34 1 0.2689 2.3672 6.4120 35 1 4.5169 -1.5473 1.0829 36 1 5.2919 0.0226 1.3699 37 1 3.8770 0.8535 -0.6687 38 1 5.2934 -0.1765 -0.9935 39 1 3.8238 -0.7508 -3.2514 40 1 3.3140 -3.5866 -2.0945 41 1 2.7882 -2.9270 -3.7038 42 1 5.1015 -2.7746 -4.4989 43 1 5.3983 -4.0913 -3.2836 44 1 6.1599 -1.3464 -2.8118 45 1 5.6901 -2.4715 -1.4656 46 1 1.4116 -1.5758 -1.4620 47 1 1.9279 -0.0105 -2.1157 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930558612.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:40 Heat of formation + Delta-G solvation = -18.399029 kcal Electronic energy + Delta-G solvation = -23789.042944 eV Core-core repulsion = 20586.410987 eV Total energy + Delta-G solvation = -3202.631957 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.92219 -38.21615 -35.83947 -34.19094 -33.54721 -32.01042 -29.30412 -27.51118 -26.31314 -25.89302 -25.28932 -24.14718 -22.77157 -20.65713 -19.99169 -19.53935 -19.16582 -16.98808 -16.32093 -15.78697 -15.50229 -15.17396 -14.60670 -14.47584 -14.40953 -13.77376 -13.50564 -13.25095 -12.97014 -12.67770 -12.51374 -12.42864 -12.16911 -12.10899 -11.69116 -11.47171 -11.22699 -11.07703 -10.95719 -10.87376 -10.86362 -10.73092 -10.45634 -10.31998 -10.26208 -10.20311 -10.03155 -9.94280 -8.89466 -8.50998 -8.12330 -7.98750 -7.36172 -5.95120 -4.13033 3.30383 3.37347 3.40010 3.91700 4.39133 4.44108 4.56088 4.61487 4.72162 4.80485 5.10045 5.21642 5.30984 5.32451 5.41955 5.52422 5.53433 5.59723 5.67198 5.70343 5.73048 5.79221 5.81480 5.94627 5.98788 6.02430 6.13553 6.14042 6.17687 6.23539 6.28957 6.36292 6.45770 6.48829 6.59818 6.71891 6.76481 6.91808 7.25229 7.35732 7.76053 7.85205 7.90571 8.18607 8.28104 8.91358 9.52828 9.69894 11.08825 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030176 B = 0.003858 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.667688 B = 7255.503469 C = 7724.306475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.090 4.090 3 H 0.081 0.919 4 C 0.079 3.921 5 N -0.545 5.545 6 C 0.037 3.963 7 C 0.238 3.762 8 H 0.054 0.946 9 O -0.554 6.554 10 C -0.574 4.574 11 H 0.053 0.947 12 C 0.080 3.920 13 N -0.858 5.858 14 Si 0.887 3.113 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.274 1.274 18 C 0.083 3.917 19 C 0.063 3.937 20 N -0.542 5.542 21 C 0.059 3.941 22 C -0.126 4.126 23 C -0.143 4.143 24 C -0.130 4.130 25 C 0.073 3.927 26 H 0.065 0.935 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.036 0.964 30 H 0.079 0.921 31 H 0.025 0.975 32 H 0.059 0.941 33 H 0.340 0.660 34 H 0.259 0.741 35 H 0.018 0.982 36 H 0.062 0.938 37 H 0.050 0.950 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.088 0.912 41 H 0.060 0.940 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.062 0.938 45 H 0.089 0.911 46 H 0.067 0.933 47 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.529 -7.196 -17.371 19.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 H 0.099 0.901 4 C -0.049 4.049 5 N -0.268 5.268 6 C -0.089 4.089 7 C 0.180 3.820 8 H 0.072 0.928 9 O -0.355 6.355 10 C -0.612 4.612 11 H 0.071 0.929 12 C -0.126 4.126 13 N -0.494 5.494 14 Si 0.714 3.286 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.048 4.048 19 C -0.066 4.066 20 N -0.266 5.266 21 C -0.049 4.049 22 C -0.164 4.164 23 C -0.181 4.181 24 C -0.168 4.168 25 C -0.054 4.054 26 H 0.084 0.916 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.097 0.903 31 H 0.043 0.957 32 H 0.077 0.923 33 H 0.183 0.817 34 H 0.069 0.931 35 H 0.036 0.964 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.107 0.893 41 H 0.079 0.921 42 H 0.095 0.905 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.108 0.892 46 H 0.085 0.915 47 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 4.713 -7.087 -17.356 19.330 hybrid contribution 0.783 -0.188 0.930 1.230 sum 5.496 -7.275 -16.425 18.786 Atomic orbital electron populations 1.21819 0.94860 1.01444 1.01951 1.21001 0.95288 1.00937 0.93662 0.90054 1.21744 0.91834 0.95133 0.96144 1.59115 1.02175 1.60374 1.05143 1.22993 1.01561 0.99057 0.85333 1.19320 0.92978 0.79031 0.90632 0.92842 1.86559 1.36269 1.27107 1.85556 1.21693 1.16698 1.30701 0.92135 0.92850 1.25013 0.94571 0.94454 0.98554 1.70079 1.17064 1.28103 1.34181 0.86708 0.77548 0.78511 0.85790 1.20573 1.21176 1.19917 1.20900 0.93555 0.97419 0.92879 1.21935 0.95963 0.94004 0.94660 1.60940 1.02074 1.43491 1.20114 1.23145 0.95707 0.95841 0.90198 1.22950 0.96252 0.96815 1.00408 1.22716 0.97270 0.99523 0.98559 1.22999 0.95551 0.98225 1.00044 1.22443 0.87997 0.98242 0.96763 0.91567 0.93298 0.93043 0.94552 0.90295 0.95681 0.92280 0.81687 0.93092 0.96428 0.91938 0.93171 0.91500 0.92277 0.89293 0.92082 0.90530 0.91292 0.91899 0.89202 0.91502 0.95575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 8.81 37.16 0.33 -1.65 16 2 C -0.09 -1.37 2.25 -91.35 -0.21 -1.57 16 3 H 0.08 1.41 7.23 -51.93 -0.38 1.04 16 4 C 0.08 1.39 4.66 -4.38 -0.02 1.37 16 5 N -0.54 -10.07 3.92 -239.76 -0.94 -11.01 16 6 C 0.04 0.79 4.53 -3.82 -0.02 0.77 16 7 C 0.24 6.07 2.79 -27.88 -0.08 5.99 16 8 H 0.05 1.50 6.35 -51.93 -0.33 1.17 16 9 O -0.55 -14.53 12.60 -35.23 -0.44 -14.97 16 10 C -0.57 -15.87 8.76 -34.44 -0.30 -16.17 16 11 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 12 C 0.08 2.26 5.40 -17.82 -0.10 2.16 16 13 N -0.86 -25.53 12.84 55.43 0.71 -24.81 16 14 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 18 C 0.08 1.32 5.03 -6.75 -0.03 1.29 16 19 C 0.06 0.86 5.22 -4.45 -0.02 0.84 16 20 N -0.54 -6.98 3.92 -225.25 -0.88 -7.86 16 21 C 0.06 0.63 3.18 -66.90 -0.21 0.42 16 22 C -0.13 -1.20 7.75 -25.92 -0.20 -1.41 16 23 C -0.14 -1.18 8.08 -25.92 -0.21 -1.39 16 24 C -0.13 -1.23 6.19 -25.92 -0.16 -1.39 16 25 C 0.07 0.95 4.76 -2.75 -0.01 0.94 16 26 H 0.07 1.04 8.09 -51.93 -0.42 0.62 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.04 0.64 7.57 -51.93 -0.39 0.24 16 30 H 0.08 1.58 5.57 -51.93 -0.29 1.29 16 31 H 0.02 0.54 8.10 -51.93 -0.42 0.11 16 32 H 0.06 1.21 7.72 -51.93 -0.40 0.81 16 33 H 0.34 8.09 9.04 45.56 0.41 8.51 16 34 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.02 0.29 8.07 -51.93 -0.42 -0.12 16 36 H 0.06 0.97 7.75 -51.93 -0.40 0.56 16 37 H 0.05 0.75 6.93 -51.93 -0.36 0.39 16 38 H 0.07 0.80 6.43 -51.93 -0.33 0.47 16 39 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 40 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 42 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.07 0.84 7.97 -51.93 -0.41 0.43 16 47 H 0.03 0.33 7.99 -51.93 -0.41 -0.09 16 LS Contribution 355.66 15.07 5.36 5.36 Total: -1.00 -29.62 355.66 -10.37 -39.99 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -7.90 Total: 6.84 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: -1.25 Total: -9.81 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: -1.11 Total: -43.69 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.44 Total: -14.97 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.62 -10.37 -39.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930558612.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.586 kcal (2) G-P(sol) polarization free energy of solvation -29.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds