Wall clock time and date at job start Tue Mar 31 2020 05:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 108.93824 * 2 1 4 4 C 1.50802 * 108.95732 * 118.74923 * 2 1 3 5 5 N 1.47898 * 108.49581 * 213.22486 * 4 2 1 6 6 C 1.46902 * 110.99988 * 153.77922 * 5 4 2 7 7 C 1.52999 * 109.46872 * 291.68280 * 6 5 4 8 8 H 1.09003 * 109.47513 * 59.55114 * 7 6 5 9 9 O 1.42899 * 109.46945 * 299.54797 * 7 6 5 10 10 C 1.50704 * 109.46997 * 179.54828 * 7 6 5 11 11 H 1.08000 * 120.00011 * 359.97438 * 10 7 6 12 12 C 1.37881 * 119.99928 * 179.97438 * 10 7 6 13 13 N 1.31512 * 120.00141 * 0.02562 * 12 10 7 14 14 Si 1.86797 * 119.99995 * 180.02562 * 12 10 7 15 15 H 1.48496 * 109.47101 * 90.00183 * 14 12 10 16 16 H 1.48498 * 109.47234 * 210.00483 * 14 12 10 17 17 H 1.48506 * 109.46988 * 330.00342 * 14 12 10 18 18 C 1.40013 * 114.07145 * 280.06764 * 5 4 2 19 19 C 1.54200 * 112.07936 * 61.80930 * 18 5 4 20 20 N 1.44570 * 108.95711 * 281.12923 * 19 18 5 21 21 C 1.46905 * 110.99884 * 220.41092 * 20 19 18 22 22 C 1.53781 * 113.61208 * 153.54443 * 21 20 19 23 23 C 1.53787 * 87.08116 * 220.01857 * 22 21 20 24 24 C 1.53778 * 113.61564 * 56.04834 * 21 20 19 25 25 C 1.48180 * 113.78862 * 94.08626 * 20 19 18 26 26 H 1.09003 * 109.47019 * 301.25025 * 1 2 3 27 27 H 1.08997 * 109.46881 * 61.24735 * 1 2 3 28 28 H 1.08995 * 109.46894 * 181.24909 * 1 2 3 29 29 H 1.09001 * 109.62872 * 93.51890 * 4 2 1 30 30 H 1.09003 * 109.79471 * 333.02792 * 4 2 1 31 31 H 1.09003 * 109.47233 * 51.67969 * 6 5 4 32 32 H 1.08999 * 109.47620 * 171.67748 * 6 5 4 33 33 H 0.96704 * 114.00332 * 299.99864 * 9 7 6 34 34 H 0.96991 * 120.00369 * 179.97438 * 13 12 10 35 35 H 1.09004 * 108.96166 * 301.13795 * 18 5 4 36 36 H 1.09006 * 108.89071 * 182.43360 * 18 5 4 37 37 H 1.09005 * 109.57513 * 41.00898 * 19 18 5 38 38 H 1.09006 * 109.57550 * 161.25583 * 19 18 5 39 39 H 1.08997 * 112.84792 * 284.85025 * 21 20 19 40 40 H 1.09001 * 113.61915 * 334.56853 * 22 21 20 41 41 H 1.09007 * 113.61443 * 105.47275 * 22 21 20 42 42 H 1.08998 * 113.61309 * 270.88560 * 23 22 21 43 43 H 1.08992 * 113.68665 * 139.99418 * 23 22 21 44 44 H 1.08998 * 113.61561 * 254.52999 * 24 21 20 45 45 H 1.09006 * 113.61236 * 25.34745 * 24 21 20 46 46 H 1.09004 * 108.90085 * 197.67605 * 25 20 19 47 47 H 1.08995 * 108.70887 * 79.21006 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8838 1.0310 0.0000 4 6 2.0200 -0.6860 1.2504 5 7 3.2821 -0.0423 1.6749 6 6 3.4875 -0.1899 3.1220 7 6 2.4434 0.6391 3.8725 8 1 1.4446 0.2951 3.6037 9 8 2.5842 2.0163 3.5182 10 6 2.6472 0.4789 5.3571 11 1 3.4417 -0.1515 5.7281 12 6 1.8193 1.1372 6.2416 13 7 0.8515 1.9045 5.7898 14 14 2.0724 0.9392 8.0817 15 1 3.0097 1.9835 8.5677 16 1 0.7689 1.0809 8.7788 17 1 2.6399 -0.4043 8.3616 18 6 4.4089 -0.4694 0.9620 19 6 4.3023 -0.1420 -0.5410 20 7 3.4462 -1.1194 -1.1750 21 6 3.9776 -1.5125 -2.4870 22 6 3.5521 -2.9235 -2.9262 23 6 4.9812 -3.1010 -3.4659 24 6 5.4177 -2.0489 -2.4328 25 6 2.0293 -0.6973 -1.2755 26 1 -0.3633 0.5331 0.8786 27 1 -0.3633 0.4943 -0.9009 28 1 -0.3633 -1.0274 0.0224 29 1 2.1985 -1.7411 1.0432 30 1 1.2754 -0.5889 2.0406 31 1 3.3853 -1.2394 3.3983 32 1 4.4861 0.1593 3.3847 33 1 3.4508 2.3901 3.7292 34 1 0.2689 2.3672 6.4120 35 1 4.5169 -1.5473 1.0829 36 1 5.2919 0.0226 1.3699 37 1 3.8770 0.8535 -0.6687 38 1 5.2934 -0.1765 -0.9935 39 1 3.8238 -0.7508 -3.2514 40 1 3.3140 -3.5866 -2.0945 41 1 2.7882 -2.9270 -3.7038 42 1 5.1015 -2.7746 -4.4989 43 1 5.3983 -4.0913 -3.2836 44 1 6.1599 -1.3464 -2.8118 45 1 5.6901 -2.4715 -1.4656 46 1 1.4116 -1.5758 -1.4620 47 1 1.9279 -0.0105 -2.1157 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930558612.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:40 Heat of formation + Delta-G solvation = -38.792958 kcal Electronic energy + Delta-G solvation = -23789.927291 eV Core-core repulsion = 20586.410987 eV Total energy + Delta-G solvation = -3203.516304 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.00875 -39.38629 -37.53261 -35.71974 -34.68827 -34.18558 -30.92502 -29.03556 -27.50573 -27.23033 -26.26188 -25.61069 -23.90543 -22.30441 -21.52682 -20.57820 -20.14351 -19.03104 -17.37075 -16.95057 -16.68477 -16.62955 -16.50177 -15.97288 -15.79953 -15.37476 -15.17696 -14.53861 -14.27164 -14.06653 -13.69546 -13.49606 -13.27401 -13.24205 -13.07150 -12.94491 -12.82850 -12.62996 -12.55375 -12.37442 -12.16471 -12.05499 -11.80238 -11.73014 -11.56270 -11.36280 -11.13122 -11.03966 -10.92658 -10.66370 -10.06442 -9.10459 -8.91168 -8.10953 -6.36986 1.40972 1.41256 1.52211 2.39675 2.91979 3.12067 3.16209 3.63636 3.82585 3.90135 3.98530 4.03478 4.07259 4.13911 4.29095 4.31986 4.41571 4.48466 4.52816 4.61437 4.65459 4.72277 4.72940 4.81934 4.85138 4.90478 4.92194 4.96608 4.98232 5.05178 5.06315 5.11048 5.14240 5.25439 5.35056 5.36837 5.45328 5.56099 5.63727 5.81220 6.06982 6.20925 6.32823 6.38488 6.72859 6.77148 7.37121 7.66060 8.93206 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030176 B = 0.003858 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.667688 B = 7255.503469 C = 7724.306475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.083 4.083 3 H 0.058 0.942 4 C 0.085 3.915 5 N -0.550 5.550 6 C 0.055 3.945 7 C 0.242 3.758 8 H 0.019 0.981 9 O -0.568 6.568 10 C -0.590 4.590 11 H 0.057 0.943 12 C 0.027 3.973 13 N -0.898 5.898 14 Si 0.959 3.041 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.266 1.266 18 C 0.082 3.918 19 C 0.074 3.926 20 N -0.551 5.551 21 C 0.054 3.946 22 C -0.125 4.125 23 C -0.132 4.132 24 C -0.130 4.130 25 C 0.081 3.919 26 H 0.038 0.962 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.038 0.962 30 H 0.046 0.954 31 H 0.019 0.981 32 H 0.067 0.933 33 H 0.350 0.650 34 H 0.261 0.739 35 H 0.013 0.987 36 H 0.068 0.932 37 H 0.036 0.964 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.091 0.909 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.078 0.922 46 H 0.076 0.924 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.752 -8.051 -18.595 21.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.103 4.103 3 H 0.076 0.924 4 C -0.042 4.042 5 N -0.274 5.274 6 C -0.073 4.073 7 C 0.184 3.816 8 H 0.037 0.963 9 O -0.371 6.371 10 C -0.628 4.628 11 H 0.075 0.925 12 C -0.176 4.176 13 N -0.535 5.535 14 Si 0.784 3.216 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.190 1.190 18 C -0.049 4.049 19 C -0.054 4.054 20 N -0.276 5.276 21 C -0.054 4.054 22 C -0.163 4.163 23 C -0.170 4.170 24 C -0.167 4.167 25 C -0.046 4.046 26 H 0.057 0.943 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.037 0.963 32 H 0.085 0.915 33 H 0.194 0.806 34 H 0.069 0.931 35 H 0.031 0.969 36 H 0.086 0.914 37 H 0.054 0.946 38 H 0.106 0.894 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.109 0.891 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.096 0.904 46 H 0.095 0.905 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 5.953 -7.956 -18.597 21.085 hybrid contribution 0.399 0.073 1.274 1.337 sum 6.352 -7.883 -17.323 20.064 Atomic orbital electron populations 1.21759 0.93915 1.02143 1.01717 1.20903 0.96120 0.99507 0.93730 0.92358 1.21674 0.90795 0.95508 0.96242 1.59111 1.03421 1.60987 1.03837 1.22617 1.00207 0.97628 0.86851 1.19146 0.92633 0.79291 0.90574 0.96287 1.86506 1.37220 1.27752 1.85642 1.22074 1.16695 1.30559 0.93453 0.92505 1.25879 0.94128 0.94010 1.03545 1.70223 1.18116 1.29242 1.35929 0.85573 0.77564 0.78844 0.79657 1.19739 1.20889 1.19030 1.20992 0.92483 0.97057 0.94319 1.21782 0.97193 0.93346 0.93126 1.60926 1.01853 1.43025 1.21784 1.23295 0.96646 0.96447 0.89014 1.22921 0.97464 0.95672 1.00264 1.22696 0.95919 0.99498 0.98909 1.22979 0.94999 0.98749 1.00003 1.22326 0.88407 0.98559 0.95350 0.94307 0.91081 0.91760 0.94352 0.93505 0.96302 0.91487 0.80594 0.93057 0.96872 0.91402 0.94587 0.89398 0.91700 0.90581 0.91186 0.89081 0.90732 0.90874 0.90364 0.90539 0.94500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.83 8.81 71.98 0.63 -3.19 16 2 C -0.08 -2.55 2.25 -11.27 -0.03 -2.58 16 3 H 0.06 2.06 7.23 -2.39 -0.02 2.05 16 4 C 0.08 3.08 4.66 85.40 0.40 3.48 16 5 N -0.55 -20.67 3.92 -912.45 -3.58 -24.25 16 6 C 0.05 2.34 4.53 86.30 0.39 2.73 16 7 C 0.24 12.73 2.79 29.85 0.08 12.81 16 8 H 0.02 1.15 6.35 -2.39 -0.02 1.13 16 9 O -0.57 -30.72 12.60 -148.98 -1.88 -32.60 16 10 C -0.59 -33.10 8.76 25.60 0.22 -32.87 16 11 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 12 C 0.03 1.52 5.40 84.66 0.46 1.98 16 13 N -0.90 -54.59 12.84 21.45 0.28 -54.31 16 14 Si 0.96 43.94 29.54 68.60 2.03 45.97 16 15 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 16 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 17 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 18 C 0.08 2.54 5.03 87.95 0.44 2.98 16 19 C 0.07 1.93 5.22 87.15 0.46 2.38 16 20 N -0.55 -13.32 3.92 -866.56 -3.40 -16.71 16 21 C 0.05 1.01 3.18 45.44 0.14 1.16 16 22 C -0.13 -2.09 7.75 31.12 0.24 -1.84 16 23 C -0.13 -1.80 8.08 31.12 0.25 -1.55 16 24 C -0.13 -2.12 6.19 31.12 0.19 -1.93 16 25 C 0.08 1.99 4.76 86.29 0.41 2.40 16 26 H 0.04 1.27 8.09 -2.39 -0.02 1.26 16 27 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.04 1.36 7.57 -2.39 -0.02 1.34 16 30 H 0.05 1.99 5.57 -2.39 -0.01 1.98 16 31 H 0.02 0.82 8.10 -2.39 -0.02 0.80 16 32 H 0.07 2.75 7.72 -2.39 -0.02 2.73 16 33 H 0.35 16.98 9.04 -74.05 -0.67 16.31 16 34 H 0.26 14.97 8.31 -92.71 -0.77 14.19 16 35 H 0.01 0.43 8.07 -2.39 -0.02 0.41 16 36 H 0.07 2.03 7.75 -2.38 -0.02 2.01 16 37 H 0.04 1.05 6.93 -2.38 -0.02 1.03 16 38 H 0.09 1.92 6.43 -2.38 -0.02 1.90 16 39 H 0.07 1.19 8.08 -2.39 -0.02 1.17 16 40 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 42 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 46 H 0.08 1.76 7.97 -2.39 -0.02 1.74 16 47 H 0.04 0.85 7.99 -2.39 -0.02 0.83 16 Total: -1.00 -64.31 355.66 -1.99 -66.30 By element: Atomic # 1 Polarization: 29.39 SS G_CDS: 0.26 Total: 29.64 kcal Atomic # 6 Polarization: -18.34 SS G_CDS: 4.30 Total: -14.04 kcal Atomic # 7 Polarization: -88.58 SS G_CDS: -6.70 Total: -95.27 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: -1.88 Total: -32.60 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -64.31 -1.99 -66.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930558612.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.504 kcal (2) G-P(sol) polarization free energy of solvation -64.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds