Wall clock time and date at job start Tue Mar 31 2020 05:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 108.93760 * 2 1 4 4 C 1.53706 * 108.95102 * 241.25743 * 2 1 3 5 5 N 1.48066 * 112.46868 * 197.96158 * 4 2 1 6 6 C 1.46902 * 110.99827 * 192.19858 * 5 4 2 7 7 C 1.52994 * 109.47142 * 311.66693 * 6 5 4 8 8 H 1.09006 * 109.47154 * 60.01666 * 7 6 5 9 9 O 1.42903 * 109.47403 * 300.01800 * 7 6 5 10 10 C 1.50700 * 109.47225 * 180.02562 * 7 6 5 11 11 H 1.08001 * 119.99444 * 0.02562 * 10 7 6 12 12 C 1.37876 * 120.00221 * 179.97438 * 10 7 6 13 13 N 1.31511 * 119.99935 * 0.02562 * 12 10 7 14 14 Si 1.86803 * 119.99905 * 180.02562 * 12 10 7 15 15 H 1.48499 * 109.47118 * 90.00365 * 14 12 10 16 16 H 1.48500 * 109.46784 * 210.00236 * 14 12 10 17 17 H 1.48492 * 109.47199 * 330.00130 * 14 12 10 18 18 C 1.44572 * 113.85507 * 318.31710 * 5 4 2 19 19 C 1.54199 * 108.85070 * 94.22887 * 18 5 4 20 20 N 1.40020 * 112.08824 * 281.18442 * 19 18 5 21 21 C 1.46896 * 111.00147 * 188.09260 * 20 19 18 22 22 C 1.53784 * 113.61410 * 153.54452 * 21 20 19 23 23 C 1.53781 * 87.08007 * 220.02140 * 22 21 20 24 24 C 1.53777 * 87.08324 * 25.42988 * 23 22 21 25 25 C 1.47907 * 114.06259 * 61.80331 * 20 19 18 26 26 H 1.09002 * 109.46869 * 178.74824 * 1 2 3 27 27 H 1.09001 * 109.46777 * 298.74204 * 1 2 3 28 28 H 1.08999 * 109.47588 * 58.74585 * 1 2 3 29 29 H 1.08994 * 108.88274 * 77.19053 * 4 2 1 30 30 H 1.08994 * 108.88275 * 318.73147 * 4 2 1 31 31 H 1.08997 * 109.46891 * 71.66933 * 6 5 4 32 32 H 1.09001 * 109.46596 * 191.66688 * 6 5 4 33 33 H 0.96702 * 113.99444 * 299.99753 * 9 7 6 34 34 H 0.97005 * 120.00331 * 179.97438 * 13 12 10 35 35 H 1.09000 * 109.57701 * 334.41947 * 18 5 4 36 36 H 1.08997 * 109.57455 * 214.04034 * 18 5 4 37 37 H 1.08996 * 108.96345 * 160.50929 * 19 18 5 38 38 H 1.09008 * 108.89063 * 41.80576 * 19 18 5 39 39 H 1.08997 * 112.84991 * 284.84635 * 21 20 19 40 40 H 1.08999 * 113.61171 * 334.56731 * 22 21 20 41 41 H 1.08999 * 113.61390 * 105.46806 * 22 21 20 42 42 H 1.09002 * 113.60910 * 270.88191 * 23 22 21 43 43 H 1.08993 * 113.61715 * 139.98219 * 23 22 21 44 44 H 1.09001 * 113.61528 * 220.02070 * 24 23 22 45 45 H 1.08998 * 113.61816 * 89.11985 * 24 23 22 46 46 H 1.08995 * 109.63548 * 39.78588 * 25 20 19 47 47 H 1.08998 * 109.63047 * 160.38093 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8837 1.0310 0.0000 4 6 2.0292 -0.6991 -1.2746 5 7 3.4440 -1.1231 -1.1704 6 6 3.9728 -1.5192 -2.4824 7 6 2.9904 -2.4760 -3.1606 8 1 2.0297 -1.9777 -3.2917 9 8 2.8173 -3.6374 -2.3461 10 6 3.5332 -2.8829 -4.5063 11 1 4.4841 -2.4978 -4.8438 12 6 2.8164 -3.7475 -5.3061 13 7 1.6588 -4.2167 -4.8949 14 14 3.4897 -4.2522 -6.9738 15 1 4.3197 -5.4744 -6.8233 16 1 2.3621 -4.5306 -7.8992 17 1 4.3224 -3.1531 -7.5248 18 6 4.3023 -0.1458 -0.5393 19 6 4.4076 -0.4720 0.9641 20 7 3.2809 -0.0430 1.6762 21 6 3.4854 -0.1898 3.1234 22 6 2.6536 0.7918 3.9658 23 6 3.8895 0.9418 4.8683 24 6 4.7330 0.5412 3.6466 25 6 2.0182 -0.6855 1.2513 26 1 -0.3633 -1.0275 -0.0225 27 1 -0.3633 0.4942 0.9011 28 1 -0.3634 0.5332 -0.8785 29 1 1.9275 -0.0135 -2.1158 30 1 1.4106 -1.5770 -1.4608 31 1 4.1046 -0.6332 -3.1035 32 1 4.9335 -2.0174 -2.3515 33 1 3.6332 -4.1315 -2.1873 34 1 1.1543 -4.8247 -5.4577 35 1 3.8782 0.8500 -0.6680 36 1 5.2933 -0.1839 -0.9915 37 1 5.2918 0.0178 1.3718 38 1 4.5132 -1.5503 1.0847 39 1 3.4130 -1.2245 3.4582 40 1 2.3871 1.7056 3.4348 41 1 1.8027 0.3272 4.4641 42 1 3.9269 0.2168 5.6814 43 1 4.0641 1.9642 5.2032 44 1 5.5610 -0.1257 3.8873 45 1 5.0352 1.3865 3.0283 46 1 2.1956 -1.7410 1.0452 47 1 1.2722 -0.5836 2.0394 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930558614.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:43 Heat of formation + Delta-G solvation = -19.553841 kcal Electronic energy + Delta-G solvation = -23795.018458 eV Core-core repulsion = 20592.336424 eV Total energy + Delta-G solvation = -3202.682033 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.99405 -38.10917 -35.92175 -33.98963 -33.79073 -32.05077 -29.21547 -27.53056 -26.40942 -25.82836 -25.20220 -24.13916 -22.75904 -20.56462 -20.49875 -19.43244 -18.78062 -17.01677 -16.43394 -15.70917 -15.51525 -15.02399 -14.65232 -14.59075 -14.37445 -13.69237 -13.46416 -13.37019 -12.84647 -12.65263 -12.57461 -12.37657 -12.25942 -12.03872 -11.71013 -11.43594 -11.24708 -11.07960 -10.94753 -10.90777 -10.81959 -10.76023 -10.65322 -10.27386 -10.21475 -10.17964 -10.08504 -9.96219 -8.88816 -8.54407 -8.03110 -8.00129 -7.45979 -5.98713 -4.16605 3.28281 3.35257 3.37864 4.05675 4.35887 4.50239 4.55596 4.61467 4.76948 4.85278 5.08901 5.28919 5.30102 5.33537 5.44506 5.54120 5.57180 5.61822 5.73239 5.74695 5.76347 5.84178 5.90570 5.96459 5.98740 6.03736 6.07857 6.15155 6.20420 6.29417 6.31372 6.32730 6.39817 6.46564 6.52275 6.61410 6.77117 6.88620 7.36499 7.57647 7.70455 7.80676 7.85938 7.97117 8.23761 8.87190 9.47814 9.64059 11.05373 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032630 B = 0.003800 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.894675 B = 7365.840791 C = 7798.733314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.089 4.089 3 H 0.071 0.929 4 C 0.070 3.930 5 N -0.544 5.544 6 C 0.037 3.963 7 C 0.232 3.768 8 H 0.056 0.944 9 O -0.555 6.555 10 C -0.574 4.574 11 H 0.054 0.946 12 C 0.080 3.920 13 N -0.859 5.859 14 Si 0.888 3.112 15 H -0.279 1.279 16 H -0.286 1.286 17 H -0.274 1.274 18 C 0.063 3.937 19 C 0.077 3.923 20 N -0.541 5.541 21 C 0.060 3.940 22 C -0.126 4.126 23 C -0.143 4.143 24 C -0.132 4.132 25 C 0.077 3.923 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.025 0.975 30 H 0.085 0.915 31 H 0.023 0.977 32 H 0.062 0.938 33 H 0.343 0.657 34 H 0.260 0.740 35 H 0.042 0.958 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.028 0.972 39 H 0.062 0.938 40 H 0.088 0.912 41 H 0.061 0.939 42 H 0.076 0.924 43 H 0.067 0.933 44 H 0.062 0.938 45 H 0.088 0.912 46 H 0.054 0.946 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.513 10.020 16.241 19.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 H 0.089 0.911 4 C -0.057 4.057 5 N -0.268 5.268 6 C -0.091 4.091 7 C 0.174 3.826 8 H 0.073 0.927 9 O -0.357 6.357 10 C -0.612 4.612 11 H 0.072 0.928 12 C -0.126 4.126 13 N -0.494 5.494 14 Si 0.715 3.285 15 H -0.205 1.205 16 H -0.211 1.211 17 H -0.199 1.199 18 C -0.067 4.067 19 C -0.053 4.053 20 N -0.265 5.265 21 C -0.048 4.048 22 C -0.164 4.164 23 C -0.181 4.181 24 C -0.170 4.170 25 C -0.049 4.049 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.043 0.957 30 H 0.103 0.897 31 H 0.041 0.959 32 H 0.080 0.920 33 H 0.186 0.814 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.047 0.953 39 H 0.080 0.920 40 H 0.106 0.894 41 H 0.079 0.921 42 H 0.095 0.905 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.106 0.894 46 H 0.073 0.927 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.688 10.191 16.357 19.346 hybrid contribution 1.100 -0.602 -1.506 1.960 sum 2.788 9.589 14.851 17.896 Atomic orbital electron populations 1.21824 0.94977 1.02082 1.01219 1.20997 0.95191 1.00096 0.94580 0.91071 1.22453 0.89396 0.99083 0.94734 1.60728 1.01416 1.40909 1.23774 1.23058 1.00005 0.98841 0.87149 1.19388 0.93622 0.82563 0.86981 0.92681 1.86536 1.35192 1.41371 1.72601 1.21671 1.06491 1.30074 1.03001 0.92808 1.25016 0.94505 0.95472 0.97626 1.70077 1.12495 1.30420 1.36456 0.86688 0.78672 0.78981 0.84111 1.20533 1.21148 1.19913 1.21880 0.96793 0.94279 0.93711 1.20947 0.92227 0.98242 0.93879 1.59487 1.03596 1.60770 1.02672 1.23073 0.97095 0.97085 0.87542 1.22953 0.96396 1.00136 0.96905 1.22720 0.97287 1.01491 0.96592 1.23001 0.96267 1.00592 0.97119 1.21766 0.89916 0.97345 0.95895 0.92342 0.92924 0.92745 0.95681 0.89673 0.95878 0.91984 0.81393 0.93049 0.93978 0.91733 0.91807 0.95349 0.92031 0.89367 0.92051 0.90501 0.91398 0.91884 0.89385 0.92746 0.91767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.85 37.16 0.33 -1.52 16 2 C -0.09 -1.31 2.25 -91.36 -0.21 -1.51 16 3 H 0.07 1.06 7.23 -51.93 -0.38 0.68 16 4 C 0.07 1.28 3.67 -2.81 -0.01 1.27 16 5 N -0.54 -10.00 3.94 -234.31 -0.92 -10.93 16 6 C 0.04 0.77 4.42 -3.83 -0.02 0.75 16 7 C 0.23 5.88 2.19 -27.89 -0.06 5.82 16 8 H 0.06 1.53 6.55 -51.93 -0.34 1.19 16 9 O -0.56 -14.44 12.48 -35.23 -0.44 -14.88 16 10 C -0.57 -15.84 8.76 -34.44 -0.30 -16.15 16 11 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 12 C 0.08 2.25 5.40 -17.82 -0.10 2.15 16 13 N -0.86 -25.46 12.84 55.43 0.71 -24.75 16 14 Si 0.89 21.28 29.54 -169.99 -5.02 16.25 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 18 C 0.06 0.98 5.45 -4.44 -0.02 0.96 16 19 C 0.08 1.08 4.93 -6.75 -0.03 1.04 16 20 N -0.54 -7.09 4.04 -230.77 -0.93 -8.02 16 21 C 0.06 0.67 3.14 -66.90 -0.21 0.46 16 22 C -0.13 -1.20 7.45 -25.92 -0.19 -1.39 16 23 C -0.14 -1.19 8.08 -25.92 -0.21 -1.39 16 24 C -0.13 -1.25 6.40 -25.92 -0.17 -1.42 16 25 C 0.08 1.09 4.79 -4.37 -0.02 1.07 16 26 H 0.06 0.79 8.11 -51.93 -0.42 0.37 16 27 H 0.05 0.59 8.02 -51.93 -0.42 0.17 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.02 0.47 8.01 -51.93 -0.42 0.06 16 30 H 0.08 1.79 6.66 -51.93 -0.35 1.45 16 31 H 0.02 0.49 8.13 -51.93 -0.42 0.07 16 32 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.34 8.15 9.04 45.56 0.41 8.56 16 34 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.04 0.66 6.93 -51.93 -0.36 0.30 16 36 H 0.06 0.97 7.62 -51.93 -0.40 0.58 16 37 H 0.06 0.79 6.52 -51.93 -0.34 0.45 16 38 H 0.03 0.45 8.06 -51.92 -0.42 0.03 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.09 0.87 7.85 -51.93 -0.41 0.47 16 46 H 0.05 0.91 7.57 -51.93 -0.39 0.52 16 47 H 0.06 0.82 7.08 -51.93 -0.37 0.45 16 LS Contribution 354.52 15.07 5.34 5.34 Total: -1.00 -29.32 354.52 -10.41 -39.74 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -7.93 Total: 7.11 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -1.22 Total: -9.87 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: -1.14 Total: -43.69 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.44 Total: -14.88 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.32 -10.41 -39.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930558614.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.182 kcal (2) G-P(sol) polarization free energy of solvation -29.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds