Wall clock time and date at job start Tue Mar 31 2020 05:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 108.93760 * 2 1 4 4 C 1.53706 * 108.95102 * 241.25743 * 2 1 3 5 5 N 1.48066 * 112.46868 * 197.96158 * 4 2 1 6 6 C 1.46902 * 110.99827 * 192.19858 * 5 4 2 7 7 C 1.52994 * 109.47142 * 311.66693 * 6 5 4 8 8 H 1.09006 * 109.47154 * 60.01666 * 7 6 5 9 9 O 1.42903 * 109.47403 * 300.01800 * 7 6 5 10 10 C 1.50700 * 109.47225 * 180.02562 * 7 6 5 11 11 H 1.08001 * 119.99444 * 0.02562 * 10 7 6 12 12 C 1.37876 * 120.00221 * 179.97438 * 10 7 6 13 13 N 1.31511 * 119.99935 * 0.02562 * 12 10 7 14 14 Si 1.86803 * 119.99905 * 180.02562 * 12 10 7 15 15 H 1.48499 * 109.47118 * 90.00365 * 14 12 10 16 16 H 1.48500 * 109.46784 * 210.00236 * 14 12 10 17 17 H 1.48492 * 109.47199 * 330.00130 * 14 12 10 18 18 C 1.44572 * 113.85507 * 318.31710 * 5 4 2 19 19 C 1.54199 * 108.85070 * 94.22887 * 18 5 4 20 20 N 1.40020 * 112.08824 * 281.18442 * 19 18 5 21 21 C 1.46896 * 111.00147 * 188.09260 * 20 19 18 22 22 C 1.53784 * 113.61410 * 153.54452 * 21 20 19 23 23 C 1.53781 * 87.08007 * 220.02140 * 22 21 20 24 24 C 1.53777 * 87.08324 * 25.42988 * 23 22 21 25 25 C 1.47907 * 114.06259 * 61.80331 * 20 19 18 26 26 H 1.09002 * 109.46869 * 178.74824 * 1 2 3 27 27 H 1.09001 * 109.46777 * 298.74204 * 1 2 3 28 28 H 1.08999 * 109.47588 * 58.74585 * 1 2 3 29 29 H 1.08994 * 108.88274 * 77.19053 * 4 2 1 30 30 H 1.08994 * 108.88275 * 318.73147 * 4 2 1 31 31 H 1.08997 * 109.46891 * 71.66933 * 6 5 4 32 32 H 1.09001 * 109.46596 * 191.66688 * 6 5 4 33 33 H 0.96702 * 113.99444 * 299.99753 * 9 7 6 34 34 H 0.97005 * 120.00331 * 179.97438 * 13 12 10 35 35 H 1.09000 * 109.57701 * 334.41947 * 18 5 4 36 36 H 1.08997 * 109.57455 * 214.04034 * 18 5 4 37 37 H 1.08996 * 108.96345 * 160.50929 * 19 18 5 38 38 H 1.09008 * 108.89063 * 41.80576 * 19 18 5 39 39 H 1.08997 * 112.84991 * 284.84635 * 21 20 19 40 40 H 1.08999 * 113.61171 * 334.56731 * 22 21 20 41 41 H 1.08999 * 113.61390 * 105.46806 * 22 21 20 42 42 H 1.09002 * 113.60910 * 270.88191 * 23 22 21 43 43 H 1.08993 * 113.61715 * 139.98219 * 23 22 21 44 44 H 1.09001 * 113.61528 * 220.02070 * 24 23 22 45 45 H 1.08998 * 113.61816 * 89.11985 * 24 23 22 46 46 H 1.08995 * 109.63548 * 39.78588 * 25 20 19 47 47 H 1.08998 * 109.63047 * 160.38093 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8837 1.0310 0.0000 4 6 2.0292 -0.6991 -1.2746 5 7 3.4440 -1.1231 -1.1704 6 6 3.9728 -1.5192 -2.4824 7 6 2.9904 -2.4760 -3.1606 8 1 2.0297 -1.9777 -3.2917 9 8 2.8173 -3.6374 -2.3461 10 6 3.5332 -2.8829 -4.5063 11 1 4.4841 -2.4978 -4.8438 12 6 2.8164 -3.7475 -5.3061 13 7 1.6588 -4.2167 -4.8949 14 14 3.4897 -4.2522 -6.9738 15 1 4.3197 -5.4744 -6.8233 16 1 2.3621 -4.5306 -7.8992 17 1 4.3224 -3.1531 -7.5248 18 6 4.3023 -0.1458 -0.5393 19 6 4.4076 -0.4720 0.9641 20 7 3.2809 -0.0430 1.6762 21 6 3.4854 -0.1898 3.1234 22 6 2.6536 0.7918 3.9658 23 6 3.8895 0.9418 4.8683 24 6 4.7330 0.5412 3.6466 25 6 2.0182 -0.6855 1.2513 26 1 -0.3633 -1.0275 -0.0225 27 1 -0.3633 0.4942 0.9011 28 1 -0.3634 0.5332 -0.8785 29 1 1.9275 -0.0135 -2.1158 30 1 1.4106 -1.5770 -1.4608 31 1 4.1046 -0.6332 -3.1035 32 1 4.9335 -2.0174 -2.3515 33 1 3.6332 -4.1315 -2.1873 34 1 1.1543 -4.8247 -5.4577 35 1 3.8782 0.8500 -0.6680 36 1 5.2933 -0.1839 -0.9915 37 1 5.2918 0.0178 1.3718 38 1 4.5132 -1.5503 1.0847 39 1 3.4130 -1.2245 3.4582 40 1 2.3871 1.7056 3.4348 41 1 1.8027 0.3272 4.4641 42 1 3.9269 0.2168 5.6814 43 1 4.0641 1.9642 5.2032 44 1 5.5610 -0.1257 3.8873 45 1 5.0352 1.3865 3.0283 46 1 2.1956 -1.7410 1.0452 47 1 1.2722 -0.5836 2.0394 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930558614.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:42 Heat of formation + Delta-G solvation = -39.904723 kcal Electronic energy + Delta-G solvation = -23795.900938 eV Core-core repulsion = 20592.336424 eV Total energy + Delta-G solvation = -3203.564514 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.07691 -39.33749 -37.59118 -35.49724 -34.97968 -34.21949 -30.84007 -29.03288 -27.53661 -27.32367 -26.19407 -25.53340 -23.99799 -22.28594 -21.72014 -20.45694 -19.98460 -19.06876 -17.48187 -17.02328 -16.70505 -16.61418 -16.26114 -16.04931 -15.89744 -15.45391 -14.95120 -14.74535 -14.24801 -13.96495 -13.73315 -13.52698 -13.27208 -13.18808 -13.08686 -12.95115 -12.83764 -12.64793 -12.58786 -12.35156 -12.25978 -12.02916 -11.96458 -11.67842 -11.50686 -11.37177 -11.13806 -10.99860 -10.92604 -10.69261 -10.06328 -9.11520 -8.98850 -8.14160 -6.40183 1.39334 1.39578 1.50584 2.37407 2.97684 3.07251 3.12354 3.70205 3.83167 3.86691 4.00695 4.07958 4.11570 4.15503 4.20021 4.28741 4.38101 4.49063 4.53400 4.58463 4.67467 4.73097 4.78805 4.85039 4.87866 4.89185 4.93367 4.98769 5.00501 5.05498 5.10210 5.14231 5.17010 5.20473 5.28569 5.42454 5.45048 5.59268 5.60237 5.75965 6.00552 6.21401 6.30826 6.50951 6.54938 6.73405 7.33601 7.59080 8.90163 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032630 B = 0.003800 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.894675 B = 7365.840791 C = 7798.733314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.079 4.079 3 H 0.077 0.923 4 C 0.078 3.922 5 N -0.548 5.548 6 C 0.053 3.947 7 C 0.236 3.764 8 H 0.022 0.978 9 O -0.569 6.569 10 C -0.590 4.590 11 H 0.058 0.942 12 C 0.026 3.974 13 N -0.898 5.898 14 Si 0.960 3.040 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.265 1.265 18 C 0.062 3.938 19 C 0.087 3.913 20 N -0.540 5.540 21 C 0.049 3.951 22 C -0.122 4.122 23 C -0.133 4.133 24 C -0.129 4.129 25 C 0.085 3.915 26 H 0.046 0.954 27 H 0.079 0.921 28 H 0.053 0.947 29 H 0.011 0.989 30 H 0.047 0.953 31 H 0.021 0.979 32 H 0.068 0.932 33 H 0.351 0.649 34 H 0.261 0.739 35 H 0.045 0.955 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.007 0.993 39 H 0.054 0.946 40 H 0.084 0.916 41 H 0.067 0.933 42 H 0.086 0.914 43 H 0.079 0.921 44 H 0.067 0.933 45 H 0.086 0.914 46 H 0.023 0.977 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.633 11.244 17.392 21.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.098 4.098 3 H 0.095 0.905 4 C -0.050 4.050 5 N -0.273 5.273 6 C -0.075 4.075 7 C 0.178 3.822 8 H 0.039 0.961 9 O -0.372 6.372 10 C -0.628 4.628 11 H 0.076 0.924 12 C -0.176 4.176 13 N -0.535 5.535 14 Si 0.785 3.215 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.190 1.190 18 C -0.066 4.066 19 C -0.043 4.043 20 N -0.263 5.263 21 C -0.059 4.059 22 C -0.160 4.160 23 C -0.170 4.170 24 C -0.167 4.167 25 C -0.042 4.042 26 H 0.065 0.935 27 H 0.097 0.903 28 H 0.072 0.928 29 H 0.029 0.971 30 H 0.065 0.935 31 H 0.039 0.961 32 H 0.086 0.914 33 H 0.195 0.805 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.091 0.909 37 H 0.104 0.896 38 H 0.025 0.975 39 H 0.072 0.928 40 H 0.103 0.897 41 H 0.085 0.915 42 H 0.104 0.896 43 H 0.098 0.902 44 H 0.086 0.914 45 H 0.105 0.895 46 H 0.041 0.959 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.826 11.429 17.528 21.115 hybrid contribution 0.741 -0.983 -1.824 2.201 sum 3.567 10.447 15.703 19.195 Atomic orbital electron populations 1.21803 0.93619 1.01721 1.02555 1.20923 0.96284 0.99643 0.92978 0.90488 1.22344 0.88929 0.97317 0.96399 1.60694 1.01890 1.42479 1.22213 1.22709 0.98876 0.97701 0.88183 1.19208 0.92975 0.82988 0.87037 0.96056 1.86492 1.36054 1.42021 1.72651 1.22063 1.06630 1.30064 1.04089 0.92424 1.25893 0.94662 0.95447 1.01630 1.70221 1.13932 1.31241 1.38128 0.85551 0.78036 0.78825 0.79103 1.19738 1.20862 1.18980 1.21981 0.96480 0.93500 0.94668 1.20842 0.93510 0.97130 0.92844 1.59555 1.02795 1.59997 1.03984 1.23247 0.99146 0.97356 0.86124 1.22930 0.97018 0.99330 0.96724 1.22692 0.95725 1.02454 0.96164 1.22993 0.95841 1.00291 0.97548 1.21659 0.91098 0.95384 0.96087 0.93501 0.90256 0.92774 0.97082 0.93458 0.96110 0.91368 0.80458 0.93018 0.93686 0.90883 0.89565 0.97482 0.92771 0.89701 0.91471 0.89590 0.90243 0.91416 0.89516 0.95882 0.89923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 8.85 71.98 0.64 -2.90 16 2 C -0.08 -2.30 2.25 -11.27 -0.03 -2.32 16 3 H 0.08 2.19 7.23 -2.39 -0.02 2.17 16 4 C 0.08 2.93 3.67 86.32 0.32 3.24 16 5 N -0.55 -20.56 3.94 -895.23 -3.52 -24.08 16 6 C 0.05 2.27 4.42 86.30 0.38 2.65 16 7 C 0.24 12.37 2.19 29.85 0.07 12.44 16 8 H 0.02 1.27 6.55 -2.38 -0.02 1.25 16 9 O -0.57 -30.72 12.48 -148.98 -1.86 -32.58 16 10 C -0.59 -33.08 8.76 25.60 0.22 -32.86 16 11 H 0.06 3.12 7.74 -2.91 -0.02 3.09 16 12 C 0.03 1.49 5.40 84.66 0.46 1.94 16 13 N -0.90 -54.52 12.84 21.45 0.28 -54.24 16 14 Si 0.96 43.89 29.54 68.60 2.03 45.92 16 15 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 16 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 17 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 18 C 0.06 1.90 5.45 87.15 0.47 2.37 16 19 C 0.09 2.33 4.93 87.95 0.43 2.76 16 20 N -0.54 -13.38 4.04 -884.03 -3.58 -16.95 16 21 C 0.05 0.99 3.14 45.44 0.14 1.13 16 22 C -0.12 -2.01 7.45 31.12 0.23 -1.78 16 23 C -0.13 -1.80 8.08 31.12 0.25 -1.54 16 24 C -0.13 -2.12 6.40 31.12 0.20 -1.92 16 25 C 0.08 2.34 4.79 85.39 0.41 2.75 16 26 H 0.05 1.29 8.11 -2.39 -0.02 1.27 16 27 H 0.08 1.60 8.02 -2.39 -0.02 1.59 16 28 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.01 0.43 8.01 -2.39 -0.02 0.42 16 30 H 0.05 2.13 6.66 -2.39 -0.02 2.12 16 31 H 0.02 0.89 8.13 -2.39 -0.02 0.87 16 32 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 33 H 0.35 17.19 9.04 -74.06 -0.67 16.52 16 34 H 0.26 14.97 8.31 -92.70 -0.77 14.20 16 35 H 0.04 1.36 6.93 -2.39 -0.02 1.34 16 36 H 0.07 2.10 7.62 -2.39 -0.02 2.08 16 37 H 0.09 1.95 6.52 -2.39 -0.02 1.93 16 38 H 0.01 0.22 8.06 -2.38 -0.02 0.20 16 39 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.09 1.47 7.85 -2.39 -0.02 1.46 16 46 H 0.02 0.78 7.57 -2.39 -0.02 0.77 16 47 H 0.08 1.98 7.08 -2.39 -0.02 1.96 16 Total: -1.00 -64.07 354.52 -2.20 -66.27 By element: Atomic # 1 Polarization: 29.44 SS G_CDS: 0.25 Total: 29.70 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: 4.20 Total: -14.02 kcal Atomic # 7 Polarization: -88.46 SS G_CDS: -6.82 Total: -95.28 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: -1.86 Total: -32.58 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -64.07 -2.20 -66.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930558614.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.368 kcal (2) G-P(sol) polarization free energy of solvation -64.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds