Wall clock time and date at job start Tue Mar 31 2020 05:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.46824 * 2 1 4 4 C 1.50690 * 109.46912 * 239.99952 * 2 1 3 5 5 O 1.21284 * 119.99933 * 254.55408 * 4 2 1 6 6 N 1.34783 * 120.00432 * 74.27555 * 4 2 1 7 7 C 1.47421 * 125.64821 * 175.22998 * 6 4 2 8 8 C 1.54912 * 104.82936 * 204.09412 * 7 6 4 9 9 C 1.55151 * 101.58401 * 322.99526 * 8 7 6 10 10 H 1.09004 * 110.72223 * 276.95827 * 9 8 7 11 11 N 1.46502 * 110.72069 * 153.86530 * 9 8 7 12 12 C 1.46508 * 119.99859 * 301.45409 * 11 9 8 13 13 C 1.36930 * 120.00260 * 121.45446 * 11 9 8 14 14 H 1.07997 * 120.00029 * 24.65283 * 13 11 9 15 15 C 1.38813 * 119.99884 * 204.65432 * 13 11 9 16 16 N 1.31614 * 120.00122 * 6.82705 * 15 13 11 17 17 Si 1.86805 * 119.99852 * 186.82431 * 15 13 11 18 18 H 1.48502 * 109.46810 * 60.00213 * 17 15 13 19 19 H 1.48501 * 109.47027 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47430 * 300.00232 * 17 15 13 21 21 C 1.47022 * 125.64362 * 354.93481 * 6 4 2 22 22 C 1.53000 * 109.46721 * 119.99847 * 2 1 3 23 23 C 1.53007 * 109.46721 * 179.97438 * 22 2 1 24 24 C 1.53000 * 109.47238 * 299.99762 * 22 2 1 25 25 C 1.52997 * 109.47215 * 60.00178 * 22 2 1 26 26 H 1.08996 * 109.46810 * 63.46291 * 1 2 3 27 27 H 1.08997 * 109.47321 * 183.46596 * 1 2 3 28 28 H 1.09001 * 109.46886 * 303.47419 * 1 2 3 29 29 H 1.08995 * 110.37060 * 322.93530 * 7 6 4 30 30 H 1.09003 * 110.36464 * 85.26348 * 7 6 4 31 31 H 1.09003 * 111.00289 * 81.07212 * 8 7 6 32 32 H 1.09006 * 111.00028 * 204.88020 * 8 7 6 33 33 H 1.08994 * 109.46992 * 95.16451 * 12 11 9 34 34 H 1.08999 * 109.46644 * 215.16788 * 12 11 9 35 35 H 1.08995 * 109.46913 * 335.16940 * 12 11 9 36 36 H 0.97009 * 119.99958 * 179.97438 * 16 15 13 37 37 H 1.09001 * 109.87985 * 298.38671 * 21 6 4 38 38 H 1.09002 * 109.88841 * 59.55245 * 21 6 4 39 39 H 1.09002 * 109.47029 * 59.99651 * 23 22 2 40 40 H 1.08995 * 109.46561 * 179.97438 * 23 22 2 41 41 H 1.09003 * 109.46999 * 300.00139 * 23 22 2 42 42 H 1.08995 * 109.47337 * 60.00070 * 24 22 2 43 43 H 1.09000 * 109.46799 * 180.02562 * 24 22 2 44 44 H 1.08996 * 109.47031 * 300.00207 * 24 22 2 45 45 H 1.08993 * 109.47243 * 59.99518 * 25 22 2 46 46 H 1.09005 * 109.46813 * 179.97438 * 25 22 2 47 47 H 1.09004 * 109.46971 * 299.99568 * 25 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.4982 -1.8264 -1.1386 6 7 1.9587 -0.1078 -2.4338 7 6 2.4993 -0.6424 -3.6968 8 6 2.7251 0.6029 -4.5901 9 6 1.5072 1.4851 -4.2083 10 1 0.6231 1.1868 -4.7719 11 7 1.8051 2.9027 -4.4271 12 6 2.9345 3.5291 -3.7352 13 6 1.0281 3.6423 -5.2781 14 1 0.0089 3.3443 -5.4753 15 6 1.5503 4.7749 -5.8873 16 7 2.8276 5.0637 -5.7549 17 14 0.4403 5.8893 -6.8951 18 1 -0.6478 6.4154 -6.0323 19 1 1.2349 7.0212 -7.4361 20 1 -0.1484 5.1169 -8.0185 21 6 1.3206 1.1886 -2.7052 22 6 2.0400 -0.7212 1.2493 23 6 3.5700 -0.7218 1.2490 24 6 1.5300 0.0001 2.4985 25 6 1.5300 -2.1637 1.2493 26 1 -0.3633 0.4591 -0.9194 27 1 -0.3634 -1.0257 0.0621 28 1 -0.3633 0.5668 0.8572 29 1 3.4433 -1.1570 -3.5178 30 1 1.7805 -1.3173 -4.1616 31 1 3.6619 1.0999 -4.3380 32 1 2.6989 0.3358 -5.6466 33 1 3.8105 3.5154 -4.3836 34 1 2.6819 4.5600 -3.4872 35 1 3.1510 2.9778 -2.8203 36 1 3.1926 5.8551 -6.1810 37 1 0.2588 1.1367 -2.4646 38 1 1.7993 1.9686 -2.1132 39 1 3.9337 0.3058 1.2486 40 1 3.9333 -1.2352 2.1392 41 1 3.9330 -1.2359 0.3590 42 1 0.4400 0.0002 2.4985 43 1 1.8937 -0.5135 3.3885 44 1 1.8934 1.0277 2.4984 45 1 1.8933 -2.6775 0.3594 46 1 1.8937 -2.6776 2.1391 47 1 0.4399 -2.1637 1.2493 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971795586.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:15 Heat of formation + Delta-G solvation = -16.452159 kcal Electronic energy + Delta-G solvation = -23960.625870 eV Core-core repulsion = 20758.078336 eV Total energy + Delta-G solvation = -3202.547534 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.42180 -38.15796 -36.41480 -34.73588 -32.03871 -31.10339 -29.50129 -27.79872 -27.35553 -27.14067 -26.09453 -24.70283 -23.22554 -22.11393 -19.62981 -19.43516 -18.09752 -17.13014 -16.82534 -15.96721 -15.24854 -14.95365 -14.67184 -14.31799 -14.06530 -13.74438 -13.53550 -13.23412 -12.97223 -12.71006 -12.47846 -12.28816 -12.09752 -12.01874 -11.90533 -11.68689 -11.50822 -11.28787 -11.07055 -10.95032 -10.92525 -10.81114 -10.60531 -10.49571 -10.48071 -10.42915 -10.24652 -9.93350 -9.91365 -9.11033 -8.61857 -8.27371 -6.84150 -5.79800 -3.29723 2.85906 3.26419 3.34278 3.40124 3.40421 4.40332 4.57354 4.67993 4.80870 5.08244 5.18771 5.24887 5.30433 5.33839 5.36969 5.45336 5.54136 5.61757 5.62809 5.73983 5.75966 5.76443 5.85531 5.87369 5.92458 5.96168 5.96853 6.06256 6.15048 6.17299 6.21208 6.31814 6.40622 6.48764 6.56058 6.60990 6.72272 6.75631 6.87353 7.32537 7.68278 7.74458 7.85988 8.32176 8.45163 9.15749 9.76696 10.26041 11.24553 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027613 B = 0.004050 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.754182 B = 6911.516866 C = 7196.667763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.097 4.097 3 H 0.091 0.909 4 C 0.534 3.466 5 O -0.545 6.545 6 N -0.611 5.611 7 C 0.107 3.893 8 C -0.151 4.151 9 C 0.173 3.827 10 H 0.078 0.922 11 N -0.587 5.587 12 C 0.162 3.838 13 C -0.262 4.262 14 H 0.069 0.931 15 C 0.007 3.993 16 N -0.907 5.907 17 Si 0.907 3.093 18 H -0.283 1.283 19 H -0.290 1.290 20 H -0.282 1.282 21 C 0.076 3.924 22 C -0.047 4.047 23 C -0.148 4.148 24 C -0.143 4.143 25 C -0.162 4.162 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.032 0.968 34 H 0.044 0.956 35 H -0.002 1.002 36 H 0.254 0.746 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.048 0.952 40 H 0.051 0.949 41 H 0.070 0.930 42 H 0.057 0.943 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.098 0.902 46 H 0.043 0.957 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.415 -9.702 11.892 15.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.119 4.119 3 H 0.109 0.891 4 C 0.324 3.676 5 O -0.424 6.424 6 N -0.344 5.344 7 C -0.016 4.016 8 C -0.191 4.191 9 C 0.062 3.938 10 H 0.096 0.904 11 N -0.308 5.308 12 C 0.018 3.982 13 C -0.391 4.391 14 H 0.087 0.913 15 C -0.192 4.192 16 N -0.551 5.551 17 Si 0.737 3.263 18 H -0.210 1.210 19 H -0.216 1.216 20 H -0.209 1.209 21 C -0.049 4.049 22 C -0.047 4.047 23 C -0.205 4.205 24 C -0.200 4.200 25 C -0.219 4.219 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.050 0.950 34 H 0.063 0.937 35 H 0.016 0.984 36 H 0.064 0.936 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.116 0.884 46 H 0.062 0.938 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.060 -10.110 11.929 15.772 hybrid contribution -0.487 0.865 -0.598 1.160 sum -2.547 -9.244 11.331 14.843 Atomic orbital electron populations 1.21916 0.93097 1.02790 1.02867 1.21299 0.97532 1.00405 0.92633 0.89078 1.20266 0.78240 0.85745 0.83391 1.90494 1.47331 1.19271 1.85339 1.48572 1.56550 1.21893 1.07389 1.22215 0.98478 0.96877 0.83983 1.23382 1.01637 0.95093 0.99003 1.21294 0.95914 0.85790 0.90785 0.90377 1.43852 1.33820 1.02947 1.50211 1.20813 0.90458 0.95438 0.91498 1.19171 0.93407 1.06569 1.19995 0.91312 1.25093 0.95586 0.99959 0.98514 1.70042 1.11078 1.27382 1.46624 0.86301 0.79636 0.80163 0.80188 1.20973 1.21590 1.20865 1.22927 0.96769 0.84033 1.01157 1.20280 0.95786 0.95880 0.92753 1.21980 0.94479 1.01352 1.02687 1.21948 1.01089 1.00100 0.96891 1.22351 1.00149 0.95535 1.03869 0.91746 0.91824 0.91347 0.91315 0.92041 0.90751 0.90474 0.94961 0.93693 0.98356 0.93575 0.91833 0.90892 0.93310 0.92978 0.91076 0.92392 0.92669 0.92733 0.88360 0.93789 0.93456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.40 37.16 0.31 -1.35 16 2 C -0.10 -1.24 1.49 -91.77 -0.14 -1.37 16 3 H 0.09 1.16 7.76 -51.93 -0.40 0.76 16 4 C 0.53 8.24 6.37 -10.99 -0.07 8.17 16 5 O -0.54 -9.45 11.92 5.55 0.07 -9.38 16 6 N -0.61 -9.61 3.33 -170.52 -0.57 -10.18 16 7 C 0.11 1.66 6.89 -2.53 -0.02 1.64 16 8 C -0.15 -2.60 6.65 -24.58 -0.16 -2.76 16 9 C 0.17 3.26 3.43 -66.09 -0.23 3.03 16 10 H 0.08 1.47 7.94 -51.93 -0.41 1.05 16 11 N -0.59 -13.73 2.94 -171.38 -0.50 -14.23 16 12 C 0.16 3.78 7.65 59.85 0.46 4.24 16 13 C -0.26 -6.80 9.61 -15.06 -0.14 -6.94 16 14 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 15 C 0.01 0.19 5.22 -17.43 -0.09 0.10 16 16 N -0.91 -25.41 10.49 55.49 0.58 -24.83 16 17 Si 0.91 21.02 29.56 -169.99 -5.02 15.99 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 C 0.08 1.23 5.62 -3.06 -0.02 1.22 16 22 C -0.05 -0.55 0.54 -154.51 -0.08 -0.63 16 23 C -0.15 -1.82 8.18 37.16 0.30 -1.52 16 24 C -0.14 -1.39 8.12 37.16 0.30 -1.09 16 25 C -0.16 -1.97 7.82 37.16 0.29 -1.67 16 26 H 0.06 0.75 5.72 -51.93 -0.30 0.45 16 27 H 0.06 0.71 6.25 -51.93 -0.32 0.38 16 28 H 0.07 0.65 6.62 -51.93 -0.34 0.31 16 29 H 0.07 1.06 8.09 -51.93 -0.42 0.64 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 1.40 7.28 -51.93 -0.38 1.02 16 32 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 33 H 0.03 0.82 7.33 -51.93 -0.38 0.44 16 34 H 0.04 1.14 7.29 -51.93 -0.38 0.76 16 35 H 0.00 -0.04 6.29 -51.93 -0.33 -0.37 16 36 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 37 H 0.06 0.96 6.16 -51.93 -0.32 0.64 16 38 H 0.07 1.25 5.88 -51.93 -0.31 0.95 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 1.03 6.06 -51.93 -0.31 0.72 16 42 H 0.06 0.52 6.51 -51.93 -0.34 0.18 16 43 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.10 1.44 5.04 -51.93 -0.26 1.18 16 46 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.05 0.53 6.35 -51.93 -0.33 0.20 16 LS Contribution 345.23 15.07 5.20 5.20 Total: -1.00 -28.23 345.23 -7.57 -35.80 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -8.04 Total: 0.56 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: 0.72 Total: 1.07 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: -0.49 Total: -49.24 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.07 Total: -9.38 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.23 -7.57 -35.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971795586.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.349 kcal (2) G-P(sol) polarization free energy of solvation -28.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds