Wall clock time and date at job start Tue Mar 31 2020 05:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.47201 * 2 1 4 4 C 1.50708 * 109.46847 * 120.00109 * 2 1 3 5 5 O 1.21276 * 119.99776 * 38.08736 * 4 2 1 6 6 N 1.34773 * 119.99484 * 218.09037 * 4 2 1 7 7 C 1.47020 * 125.65263 * 5.02781 * 6 4 2 8 8 C 1.54327 * 107.27315 * 181.02526 * 7 6 4 9 9 C 1.55150 * 102.93903 * 22.19715 * 8 7 6 10 10 H 1.08998 * 111.04306 * 82.58605 * 9 8 7 11 11 N 1.46505 * 111.00251 * 206.42277 * 9 8 7 12 12 C 1.46504 * 119.99903 * 52.19436 * 11 9 8 13 13 C 1.36934 * 120.00178 * 232.19686 * 11 9 8 14 14 H 1.08004 * 119.99602 * 334.30844 * 13 11 9 15 15 C 1.38809 * 119.99997 * 154.31116 * 13 11 9 16 16 N 1.31617 * 120.00013 * 326.40998 * 15 13 11 17 17 Si 1.86799 * 119.99866 * 146.41811 * 15 13 11 18 18 H 1.48502 * 109.47015 * 179.97438 * 17 15 13 19 19 H 1.48497 * 109.47363 * 299.99353 * 17 15 13 20 20 H 1.48505 * 109.47518 * 59.99743 * 17 15 13 21 21 C 1.47426 * 125.64671 * 184.99521 * 6 4 2 22 22 C 1.52995 * 109.47082 * 239.99947 * 2 1 3 23 23 C 1.53000 * 109.47106 * 300.00088 * 22 2 1 24 24 C 1.53007 * 109.47137 * 59.99918 * 22 2 1 25 25 C 1.52997 * 109.47370 * 180.02562 * 22 2 1 26 26 H 1.08997 * 109.46999 * 61.93594 * 1 2 3 27 27 H 1.09003 * 109.47107 * 181.93762 * 1 2 3 28 28 H 1.08999 * 109.46923 * 301.93900 * 1 2 3 29 29 H 1.09002 * 109.88306 * 300.44434 * 7 6 4 30 30 H 1.08999 * 109.88035 * 61.45089 * 7 6 4 31 31 H 1.08996 * 110.72190 * 263.83268 * 8 7 6 32 32 H 1.09000 * 110.71326 * 140.55627 * 8 7 6 33 33 H 1.08997 * 109.46898 * 272.90481 * 12 11 9 34 34 H 1.09005 * 109.46864 * 32.90903 * 12 11 9 35 35 H 1.08998 * 109.46701 * 152.90250 * 12 11 9 36 36 H 0.96997 * 120.00013 * 359.62660 * 16 15 13 37 37 H 1.08994 * 110.37033 * 37.05866 * 21 6 4 38 38 H 1.09007 * 110.36182 * 274.74502 * 21 6 4 39 39 H 1.09004 * 109.47614 * 60.00058 * 23 22 2 40 40 H 1.09000 * 109.47226 * 179.97438 * 23 22 2 41 41 H 1.08995 * 109.47304 * 300.00134 * 23 22 2 42 42 H 1.08993 * 109.46942 * 60.00186 * 24 22 2 43 43 H 1.09001 * 109.46743 * 179.97438 * 24 22 2 44 44 H 1.08994 * 109.47099 * 300.00142 * 24 22 2 45 45 H 1.09002 * 109.47306 * 59.99927 * 25 22 2 46 46 H 1.09000 * 109.47268 * 179.97438 * 25 22 2 47 47 H 1.09002 * 109.46881 * 300.00034 * 25 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2305 5 8 1.4551 -1.6952 1.6403 6 7 3.1231 -0.2514 1.8756 7 6 3.8536 0.9828 1.5524 8 6 5.0391 1.0844 2.5353 9 6 5.2403 -0.3853 2.9899 10 1 5.8359 -0.9410 2.2656 11 7 5.8485 -0.4445 4.3214 12 6 5.2567 0.3071 5.4310 13 6 6.9700 -1.2022 4.5288 14 1 7.1743 -2.0501 3.8918 15 6 7.8444 -0.8805 5.5578 16 7 8.0305 0.3783 5.8940 17 14 8.7571 -2.2343 6.4653 18 1 9.6229 -1.6326 7.5111 19 1 7.7776 -3.1519 7.1007 20 1 9.5971 -2.9947 5.5053 21 6 3.7808 -0.9035 3.0226 22 6 2.0400 -0.7212 -1.2492 23 6 1.5300 -2.1637 -1.2492 24 6 1.5300 0.0000 -2.4985 25 6 3.5700 -0.7218 -1.2489 26 1 -0.3633 0.4835 -0.9068 27 1 -0.3633 -1.0271 0.0347 28 1 -0.3633 0.5437 0.8721 29 1 4.2241 0.9369 0.5282 30 1 3.1963 1.8443 1.6704 31 1 4.7833 1.7189 3.3837 32 1 5.9293 1.4566 2.0284 33 1 5.6616 1.3190 5.4413 34 1 4.1748 0.3498 5.3048 35 1 5.4933 -0.1886 6.3725 36 1 7.5607 1.0816 5.4191 37 1 3.7601 -1.9870 2.9062 38 1 3.2955 -0.6119 3.9541 39 1 0.4400 -2.1638 -1.2492 40 1 1.8930 -2.6775 -2.1394 41 1 1.8933 -2.6776 -0.3592 42 1 1.8933 1.0276 -2.4985 43 1 1.8937 -0.5136 -3.3884 44 1 0.4401 0.0000 -2.4985 45 1 3.9330 -1.2359 -0.3590 46 1 3.9333 -1.2361 -2.1387 47 1 3.9337 0.3057 -1.2487 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971795587.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:18 Heat of formation + Delta-G solvation = -28.099928 kcal Electronic energy + Delta-G solvation = -24002.100591 eV Core-core repulsion = 20799.047972 eV Total energy + Delta-G solvation = -3203.052619 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.47582 -38.11603 -36.72794 -35.04697 -31.76453 -31.06441 -29.76362 -28.41194 -27.42889 -27.13998 -26.13452 -24.69037 -22.95362 -22.19639 -19.99587 -19.40604 -17.93006 -17.56015 -17.05809 -16.28034 -15.31300 -15.14480 -14.44899 -14.10274 -14.03768 -13.80105 -13.49502 -13.37231 -13.31492 -12.91560 -12.65972 -12.44049 -12.28002 -12.15753 -12.05629 -11.85550 -11.78695 -11.37429 -11.35560 -11.03906 -10.97192 -10.83965 -10.70010 -10.64870 -10.60769 -10.49679 -10.15933 -10.02917 -9.57304 -9.44198 -8.40933 -8.24804 -6.96999 -6.22412 -3.25805 2.80762 3.20886 3.47771 3.52891 3.69977 4.45061 4.52099 4.57828 4.61538 4.92185 4.93678 5.16277 5.20548 5.21175 5.25018 5.29029 5.37947 5.48373 5.50192 5.59350 5.62670 5.68975 5.71677 5.75355 5.79684 5.82617 5.85059 5.93722 5.98365 6.01991 6.14247 6.21283 6.25857 6.28356 6.36934 6.43328 6.54666 6.56280 6.76817 6.84609 7.03274 7.79599 7.98009 8.39232 8.51555 9.03618 9.79139 10.18859 11.10926 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030586 B = 0.003938 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.228615 B = 7107.933678 C = 7176.416880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.098 4.098 3 H 0.085 0.915 4 C 0.533 3.467 5 O -0.545 6.545 6 N -0.612 5.612 7 C 0.099 3.901 8 C -0.153 4.153 9 C 0.175 3.825 10 H 0.079 0.921 11 N -0.586 5.586 12 C 0.132 3.868 13 C -0.373 4.373 14 H 0.058 0.942 15 C -0.014 4.014 16 N -0.900 5.900 17 Si 1.062 2.938 18 H -0.286 1.286 19 H -0.292 1.292 20 H -0.292 1.292 21 C 0.087 3.913 22 C -0.054 4.054 23 C -0.147 4.147 24 C -0.140 4.140 25 C -0.150 4.150 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.012 0.988 34 H 0.019 0.981 35 H 0.050 0.950 36 H 0.270 0.730 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.051 0.949 41 H 0.066 0.934 42 H 0.055 0.945 43 H 0.057 0.943 44 H 0.059 0.941 45 H 0.061 0.939 46 H 0.058 0.942 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.100 2.531 -14.813 19.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.120 4.120 3 H 0.103 0.897 4 C 0.322 3.678 5 O -0.422 6.422 6 N -0.346 5.346 7 C -0.024 4.024 8 C -0.193 4.193 9 C 0.064 3.936 10 H 0.097 0.903 11 N -0.307 5.307 12 C -0.013 4.013 13 C -0.502 4.502 14 H 0.076 0.924 15 C -0.218 4.218 16 N -0.538 5.538 17 Si 0.891 3.109 18 H -0.212 1.212 19 H -0.219 1.219 20 H -0.219 1.219 21 C -0.038 4.038 22 C -0.055 4.055 23 C -0.204 4.204 24 C -0.198 4.198 25 C -0.207 4.207 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.030 0.970 34 H 0.037 0.963 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.077 0.923 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.333 1.668 -13.360 17.599 hybrid contribution -1.020 0.520 -1.209 1.665 sum -12.353 2.188 -14.569 19.226 Atomic orbital electron populations 1.21791 0.92887 1.03367 1.01701 1.21360 0.97756 0.99967 0.92871 0.89687 1.20190 0.78955 0.84508 0.84152 1.90659 1.56706 1.27257 1.67608 1.48537 1.28074 1.24901 1.33100 1.22138 0.94065 0.86495 0.99709 1.23213 0.96317 1.01326 0.98476 1.21447 0.90718 0.92480 0.88927 0.90311 1.43837 1.29118 1.55640 1.02074 1.20951 0.93694 0.95203 0.91446 1.19858 1.02326 1.08230 1.19750 0.92396 1.25818 0.96692 1.00083 0.99198 1.70827 1.37214 0.99282 1.46448 0.83566 0.75797 0.74956 0.76562 1.21166 1.21950 1.21860 1.22916 0.95143 0.97937 0.87790 1.20409 0.95753 0.96046 0.93286 1.21991 1.01332 0.94826 1.02233 1.21919 1.01246 1.00056 0.96533 1.22051 0.94181 1.01987 1.02469 0.91678 0.91026 0.92722 0.91446 0.92264 0.90840 0.90550 0.97044 0.96271 0.93129 0.91909 0.91114 0.91755 0.92261 0.92986 0.91478 0.92584 0.92391 0.92159 0.92042 0.92333 0.92320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 8.22 37.16 0.31 -1.17 16 2 C -0.10 -1.14 1.85 -91.77 -0.17 -1.31 16 3 H 0.08 0.88 6.91 -51.93 -0.36 0.52 16 4 C 0.53 8.32 5.13 -10.98 -0.06 8.27 16 5 O -0.54 -10.34 15.02 5.56 0.08 -10.26 16 6 N -0.61 -9.67 2.87 -170.52 -0.49 -10.16 16 7 C 0.10 1.34 5.78 -3.06 -0.02 1.32 16 8 C -0.15 -2.52 6.50 -24.90 -0.16 -2.68 16 9 C 0.17 3.47 3.54 -65.78 -0.23 3.24 16 10 H 0.08 1.63 7.96 -51.93 -0.41 1.22 16 11 N -0.59 -14.12 2.80 -171.03 -0.48 -14.60 16 12 C 0.13 3.04 7.78 59.85 0.47 3.50 16 13 C -0.37 -10.18 9.35 -15.06 -0.14 -10.32 16 14 H 0.06 1.60 8.01 -52.48 -0.42 1.18 16 15 C -0.01 -0.37 4.51 -17.43 -0.08 -0.45 16 16 N -0.90 -26.30 12.99 55.49 0.72 -25.58 16 17 Si 1.06 24.93 30.03 -169.99 -5.10 19.82 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 21 C 0.09 1.62 6.47 -2.53 -0.02 1.60 16 22 C -0.05 -0.57 0.57 -154.51 -0.09 -0.65 16 23 C -0.15 -1.68 7.68 37.16 0.29 -1.39 16 24 C -0.14 -1.13 8.13 37.16 0.30 -0.83 16 25 C -0.15 -1.62 7.20 37.16 0.27 -1.35 16 26 H 0.06 0.53 6.33 -51.93 -0.33 0.20 16 27 H 0.07 0.84 6.19 -51.93 -0.32 0.52 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.79 5.70 -51.93 -0.30 0.50 16 30 H 0.06 0.70 8.01 -51.93 -0.42 0.29 16 31 H 0.07 1.27 6.94 -51.93 -0.36 0.91 16 32 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.01 0.27 6.81 -51.93 -0.35 -0.08 16 34 H 0.02 0.39 6.38 -51.93 -0.33 0.06 16 35 H 0.05 1.26 7.45 -51.93 -0.39 0.87 16 36 H 0.27 7.90 6.59 -40.82 -0.27 7.63 16 37 H 0.07 1.42 8.09 -51.93 -0.42 1.00 16 38 H 0.06 1.27 6.34 -51.93 -0.33 0.94 16 39 H 0.06 0.64 6.47 -51.93 -0.34 0.31 16 40 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.96 6.34 -51.93 -0.33 0.63 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.45 6.39 -51.93 -0.33 0.11 16 45 H 0.06 0.81 6.89 -51.93 -0.36 0.45 16 46 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.06 0.57 6.76 -51.93 -0.35 0.22 16 LS Contribution 347.15 15.07 5.23 5.23 Total: -1.00 -30.53 347.15 -7.42 -37.94 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -8.04 Total: -0.17 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: 0.66 Total: -2.23 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: -0.25 Total: -50.35 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.08 Total: -10.26 kcal Atomic # 14 Polarization: 24.93 SS G_CDS: -5.10 Total: 19.82 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.53 -7.42 -37.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971795587.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.845 kcal (2) G-P(sol) polarization free energy of solvation -30.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds