Wall clock time and date at job start Tue Mar 31 2020 05:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09011 * 109.46918 * 2 1 4 4 C 1.50705 * 109.46879 * 119.99258 * 2 1 3 5 5 O 1.21286 * 119.99393 * 112.60734 * 4 2 1 6 6 N 1.34775 * 120.00323 * 292.60551 * 4 2 1 7 7 C 1.47019 * 125.64890 * 175.14748 * 6 4 2 8 8 C 1.54322 * 107.27333 * 178.90496 * 7 6 4 9 9 C 1.55163 * 103.10100 * 337.71603 * 8 7 6 10 10 H 1.09000 * 111.00646 * 277.51642 * 9 8 7 11 11 N 1.46496 * 111.00487 * 153.66076 * 9 8 7 12 12 C 1.46503 * 120.00364 * 301.45968 * 11 9 8 13 13 C 1.36942 * 120.00020 * 121.45701 * 11 9 8 14 14 H 1.08000 * 119.99994 * 18.51230 * 13 11 9 15 15 C 1.38810 * 120.00256 * 198.52047 * 13 11 9 16 16 N 1.31623 * 120.00070 * 6.01689 * 15 13 11 17 17 Si 1.86802 * 119.99975 * 186.01881 * 15 13 11 18 18 H 1.48493 * 109.47014 * 89.99921 * 17 15 13 19 19 H 1.48498 * 109.46621 * 209.99695 * 17 15 13 20 20 H 1.48500 * 109.47085 * 329.99687 * 17 15 13 21 21 C 1.47426 * 125.64552 * 355.10103 * 6 4 2 22 22 C 1.52994 * 109.47769 * 239.99667 * 2 1 3 23 23 C 1.52996 * 109.47043 * 300.00258 * 22 2 1 24 24 C 1.53004 * 109.46814 * 59.99522 * 22 2 1 25 25 C 1.52995 * 109.47562 * 179.97438 * 22 2 1 26 26 H 1.09000 * 109.46916 * 178.34962 * 1 2 3 27 27 H 1.09002 * 109.47634 * 298.35128 * 1 2 3 28 28 H 1.09001 * 109.47194 * 58.35594 * 1 2 3 29 29 H 1.09002 * 109.88103 * 59.48856 * 7 6 4 30 30 H 1.09001 * 110.01020 * 298.39777 * 7 6 4 31 31 H 1.08996 * 110.71960 * 96.16779 * 8 7 6 32 32 H 1.08996 * 110.72454 * 219.27057 * 8 7 6 33 33 H 1.09003 * 109.47242 * 94.93215 * 12 11 9 34 34 H 1.08998 * 109.46843 * 214.93390 * 12 11 9 35 35 H 1.08997 * 109.47104 * 334.93578 * 12 11 9 36 36 H 0.96997 * 120.00336 * 180.02562 * 16 15 13 37 37 H 1.08992 * 110.37083 * 323.00856 * 21 6 4 38 38 H 1.09008 * 110.36028 * 85.22216 * 21 6 4 39 39 H 1.09007 * 109.47515 * 59.99267 * 23 22 2 40 40 H 1.09001 * 109.47410 * 179.97438 * 23 22 2 41 41 H 1.08998 * 109.47303 * 299.99815 * 23 22 2 42 42 H 1.09003 * 109.47073 * 60.00933 * 24 22 2 43 43 H 1.09008 * 109.47026 * 180.02562 * 24 22 2 44 44 H 1.08998 * 109.47652 * 300.00230 * 24 22 2 45 45 H 1.09008 * 109.46874 * 59.99975 * 25 22 2 46 46 H 1.09001 * 109.47326 * 179.97438 * 25 22 2 47 47 H 1.08997 * 109.47176 * 300.00389 * 25 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.6151 -1.7686 1.1244 6 7 1.8339 -0.1695 2.4490 7 6 2.1791 -0.7985 3.7322 8 6 1.7973 0.1969 4.8480 9 6 1.7823 1.5623 4.1111 10 1 2.7883 1.9742 4.0311 11 7 0.8814 2.5076 4.7752 12 6 -0.5363 2.1765 4.9393 13 6 1.3644 3.7007 5.2427 14 1 2.3054 4.0833 4.8758 15 6 0.6447 4.4182 6.1882 16 7 -0.4400 3.8987 6.7229 17 14 1.2157 6.1211 6.7017 18 1 0.5928 7.1392 5.8182 19 1 0.8141 6.3743 8.1087 20 1 2.6939 6.2032 6.5863 21 6 1.2357 1.1513 2.7158 22 6 2.0401 -0.7213 -1.2491 23 6 1.5302 -2.1637 -1.2491 24 6 1.5301 -0.0001 -2.4984 25 6 3.5701 -0.7207 -1.2494 26 1 -0.3633 -1.0272 -0.0296 27 1 -0.3634 0.4880 0.9044 28 1 -0.3634 0.5392 -0.8749 29 1 3.2491 -1.0035 3.7686 30 1 1.6198 -1.7259 3.8554 31 1 0.8113 -0.0348 5.2506 32 1 2.5461 0.1945 5.6399 33 1 -0.6947 1.7346 5.9230 34 1 -1.1340 3.0834 4.8478 35 1 -0.8348 1.4653 4.1691 36 1 -0.9432 4.4003 7.3834 37 1 1.5498 1.8699 1.9589 38 1 0.1484 1.0773 2.7395 39 1 0.4401 -2.1638 -1.2491 40 1 1.8932 -2.6775 -2.1392 41 1 1.8934 -2.6775 -0.3591 42 1 1.8934 1.0276 -2.4985 43 1 1.8931 -0.5143 -3.3884 44 1 0.4401 -0.0002 -2.4985 45 1 3.9337 -1.2342 -0.3593 46 1 3.9335 -1.2350 -2.1391 47 1 3.9330 0.3071 -1.2496 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971795588.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:20 Heat of formation + Delta-G solvation = -15.486109 kcal Electronic energy + Delta-G solvation = -23893.214846 eV Core-core repulsion = 20690.709203 eV Total energy + Delta-G solvation = -3202.505643 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.43295 -38.14827 -36.42521 -34.79190 -32.07852 -31.08806 -29.46346 -27.78270 -27.34024 -27.18096 -26.14549 -24.69856 -23.26436 -22.10393 -19.68706 -19.35750 -18.13559 -17.07786 -16.90379 -15.82633 -15.46818 -14.89264 -14.81333 -14.21710 -14.05811 -13.60179 -13.46761 -13.26380 -13.00359 -12.86980 -12.53307 -12.30802 -12.08511 -12.05567 -11.85739 -11.78218 -11.53241 -11.24043 -11.13899 -10.95264 -10.90733 -10.83603 -10.57742 -10.50739 -10.42726 -10.40487 -10.24550 -9.92799 -9.89814 -9.17199 -8.62131 -8.29144 -6.91506 -5.78898 -3.24961 2.84246 3.24358 3.33762 3.40480 3.41486 4.39517 4.56407 4.66388 4.79554 5.06395 5.16313 5.23598 5.30471 5.34366 5.41281 5.44547 5.49781 5.61131 5.61369 5.70583 5.73372 5.76486 5.84664 5.86252 5.91743 5.95274 5.96289 6.04020 6.14172 6.16700 6.18410 6.30529 6.37536 6.50254 6.54857 6.60484 6.68063 6.75099 6.83985 7.40749 7.64981 7.78300 7.83807 8.29798 8.43146 9.15812 9.77014 10.23095 11.24809 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026948 B = 0.003991 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.788936 B = 7014.853524 C = 7314.543726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.097 4.097 3 H 0.092 0.908 4 C 0.533 3.467 5 O -0.544 6.544 6 N -0.611 5.611 7 C 0.111 3.889 8 C -0.153 4.153 9 C 0.174 3.826 10 H 0.078 0.922 11 N -0.589 5.589 12 C 0.163 3.837 13 C -0.257 4.257 14 H 0.072 0.928 15 C 0.002 3.998 16 N -0.911 5.911 17 Si 0.909 3.091 18 H -0.287 1.287 19 H -0.290 1.290 20 H -0.280 1.280 21 C 0.076 3.924 22 C -0.046 4.046 23 C -0.158 4.158 24 C -0.143 4.143 25 C -0.150 4.150 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.025 0.975 34 H 0.058 0.942 35 H -0.004 1.004 36 H 0.253 0.747 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.047 0.953 40 H 0.045 0.955 41 H 0.091 0.909 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.077 0.923 46 H 0.050 0.950 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.245 -7.961 -13.545 15.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.118 4.118 3 H 0.110 0.890 4 C 0.322 3.678 5 O -0.424 6.424 6 N -0.344 5.344 7 C -0.012 4.012 8 C -0.193 4.193 9 C 0.063 3.937 10 H 0.096 0.904 11 N -0.309 5.309 12 C 0.019 3.981 13 C -0.386 4.386 14 H 0.090 0.910 15 C -0.195 4.195 16 N -0.557 5.557 17 Si 0.739 3.261 18 H -0.214 1.214 19 H -0.217 1.217 20 H -0.205 1.205 21 C -0.049 4.049 22 C -0.047 4.047 23 C -0.215 4.215 24 C -0.201 4.201 25 C -0.207 4.207 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.044 0.956 34 H 0.077 0.923 35 H 0.014 0.986 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.110 0.890 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.095 0.905 46 H 0.069 0.931 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.423 -8.433 -13.508 16.108 hybrid contribution 0.158 1.024 0.430 1.122 sum 2.581 -7.409 -13.079 15.252 Atomic orbital electron populations 1.21907 0.93017 1.02781 1.02968 1.21304 0.97558 1.00369 0.92585 0.89014 1.20268 0.78892 0.85253 0.83384 1.90520 1.42715 1.23427 1.85690 1.48516 1.60875 1.19656 1.05355 1.21899 0.99970 0.96370 0.82957 1.23249 1.02471 0.96678 0.96918 1.21450 0.94399 0.88921 0.88896 0.90422 1.43874 1.04278 1.16431 1.66368 1.20909 0.83579 0.97911 0.95720 1.19290 1.05922 0.95637 1.17744 0.90999 1.24983 0.98006 0.99270 0.97275 1.70099 1.18213 1.36872 1.30501 0.86179 0.78201 0.83992 0.77698 1.21445 1.21658 1.20505 1.23193 0.98631 0.82606 1.00478 1.20269 0.95887 0.95772 0.92739 1.22253 1.00155 0.95536 1.03565 1.21957 1.01128 1.00064 0.96905 1.22030 0.94415 1.01273 1.02995 0.91933 0.91646 0.91348 0.92047 0.92334 0.90698 0.90676 0.95619 0.92344 0.98589 0.93669 0.91253 0.90873 0.93380 0.93622 0.89030 0.92754 0.92673 0.92362 0.90466 0.93125 0.93490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.39 37.16 0.31 -1.37 16 2 C -0.10 -1.20 1.47 -91.77 -0.14 -1.34 16 3 H 0.09 1.11 7.43 -51.92 -0.39 0.72 16 4 C 0.53 8.11 6.49 -10.98 -0.07 8.04 16 5 O -0.54 -9.36 11.76 5.55 0.07 -9.29 16 6 N -0.61 -9.52 3.33 -170.21 -0.57 -10.08 16 7 C 0.11 1.72 6.87 -3.07 -0.02 1.70 16 8 C -0.15 -2.60 6.52 -24.89 -0.16 -2.76 16 9 C 0.17 3.30 3.57 -65.52 -0.23 3.06 16 10 H 0.08 1.49 7.92 -51.93 -0.41 1.08 16 11 N -0.59 -13.72 2.98 -170.73 -0.51 -14.23 16 12 C 0.16 3.77 7.80 59.85 0.47 4.24 16 13 C -0.26 -6.66 9.71 -15.06 -0.15 -6.81 16 14 H 0.07 1.82 7.78 -52.49 -0.41 1.41 16 15 C 0.00 0.06 5.26 -17.43 -0.09 -0.03 16 16 N -0.91 -25.40 10.11 55.49 0.56 -24.84 16 17 Si 0.91 21.08 29.56 -169.99 -5.02 16.06 16 18 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 C 0.08 1.22 5.21 -2.27 -0.01 1.21 16 22 C -0.05 -0.53 0.54 -154.51 -0.08 -0.61 16 23 C -0.16 -1.89 7.83 37.16 0.29 -1.60 16 24 C -0.14 -1.35 8.12 37.16 0.30 -1.05 16 25 C -0.15 -1.80 8.18 37.15 0.30 -1.49 16 26 H 0.06 0.71 6.34 -51.93 -0.33 0.38 16 27 H 0.06 0.79 5.98 -51.93 -0.31 0.48 16 28 H 0.07 0.65 6.52 -51.93 -0.34 0.32 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.07 1.36 7.28 -51.93 -0.38 0.98 16 32 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.03 0.65 7.54 -51.93 -0.39 0.25 16 34 H 0.06 1.49 6.79 -51.93 -0.35 1.14 16 35 H 0.00 -0.09 6.05 -51.93 -0.31 -0.40 16 36 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 37 H 0.07 1.06 7.29 -51.93 -0.38 0.68 16 38 H 0.07 1.22 5.05 -51.92 -0.26 0.95 16 39 H 0.05 0.53 6.39 -51.92 -0.33 0.20 16 40 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.09 1.32 5.25 -51.93 -0.27 1.05 16 42 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 44 H 0.06 0.51 6.47 -51.93 -0.34 0.18 16 45 H 0.08 1.10 5.79 -51.92 -0.30 0.80 16 46 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 344.31 15.07 5.19 5.19 Total: -1.00 -28.07 344.31 -7.58 -35.66 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -8.02 Total: 0.36 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: 0.72 Total: 1.19 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: -0.51 Total: -49.15 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.07 Total: -9.29 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.07 -7.58 -35.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971795588.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.172 kcal (2) G-P(sol) polarization free energy of solvation -28.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds