Wall clock time and date at job start Tue Mar 31 2020 05:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46931 * 2 1 4 4 C 1.50694 * 109.47367 * 240.00106 * 2 1 3 5 5 O 1.21283 * 119.99732 * 319.29103 * 4 2 1 6 6 N 1.34774 * 120.00300 * 139.29326 * 4 2 1 7 7 C 1.47016 * 125.65094 * 4.09297 * 6 4 2 8 8 C 1.54319 * 107.27661 * 181.02262 * 7 6 4 9 9 C 1.55161 * 102.93844 * 22.19926 * 8 7 6 10 10 H 1.09004 * 111.03858 * 82.58429 * 9 8 7 11 11 N 1.46499 * 111.00224 * 206.42003 * 9 8 7 12 12 C 1.46499 * 120.00327 * 52.19908 * 11 9 8 13 13 C 1.36944 * 119.99723 * 232.46814 * 11 9 8 14 14 H 1.07995 * 120.00182 * 325.82179 * 13 11 9 15 15 C 1.38811 * 119.99617 * 145.82146 * 13 11 9 16 16 N 1.31622 * 119.99820 * 160.57163 * 15 13 11 17 17 Si 1.86803 * 120.00174 * 340.57881 * 15 13 11 18 18 H 1.48499 * 109.47307 * 91.67355 * 17 15 13 19 19 H 1.48499 * 109.46815 * 211.67335 * 17 15 13 20 20 H 1.48501 * 109.47129 * 331.67025 * 17 15 13 21 21 C 1.47427 * 125.64761 * 184.05790 * 6 4 2 22 22 C 1.52997 * 109.46946 * 119.99504 * 2 1 3 23 23 C 1.53001 * 109.46946 * 180.02562 * 22 2 1 24 24 C 1.52999 * 109.47669 * 300.00139 * 22 2 1 25 25 C 1.52995 * 109.47093 * 60.00574 * 22 2 1 26 26 H 1.09001 * 109.47291 * 63.20966 * 1 2 3 27 27 H 1.08994 * 109.47215 * 183.20948 * 1 2 3 28 28 H 1.09003 * 109.47166 * 303.21483 * 1 2 3 29 29 H 1.08994 * 109.88516 * 300.45243 * 7 6 4 30 30 H 1.09010 * 109.87654 * 61.45417 * 7 6 4 31 31 H 1.08999 * 110.72631 * 263.83402 * 8 7 6 32 32 H 1.09005 * 110.72049 * 140.55802 * 8 7 6 33 33 H 1.09003 * 109.47402 * 87.07218 * 12 11 9 34 34 H 1.08990 * 109.47151 * 207.07800 * 12 11 9 35 35 H 1.09003 * 109.46724 * 327.07646 * 12 11 9 36 36 H 0.97001 * 119.99823 * 180.02562 * 16 15 13 37 37 H 1.09005 * 110.36568 * 37.06802 * 21 6 4 38 38 H 1.08998 * 110.36785 * 274.74466 * 21 6 4 39 39 H 1.09001 * 109.46931 * 60.00496 * 23 22 2 40 40 H 1.09002 * 109.47225 * 180.02562 * 23 22 2 41 41 H 1.08999 * 109.47548 * 300.00131 * 23 22 2 42 42 H 1.08998 * 109.46972 * 59.99893 * 24 22 2 43 43 H 1.08993 * 109.47223 * 179.97438 * 24 22 2 44 44 H 1.09003 * 109.46518 * 300.00326 * 24 22 2 45 45 H 1.09006 * 109.47578 * 59.99354 * 25 22 2 46 46 H 1.08993 * 109.47583 * 179.97438 * 25 22 2 47 47 H 1.09011 * 109.47038 * 299.99427 * 25 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 8 1.4839 -1.7222 -1.6129 6 7 3.0912 -0.2213 -1.9058 7 6 3.8986 0.9411 -1.5082 8 6 4.9784 1.1416 -2.5923 9 6 4.3674 0.4280 -3.8273 10 1 3.6657 1.0794 -4.3482 11 7 5.4171 -0.0413 -4.7351 12 6 6.5161 -0.8628 -4.2219 13 6 5.3739 0.2927 -6.0625 14 1 4.4226 0.3862 -6.5651 15 6 6.5529 0.5109 -6.7619 16 7 6.5585 0.4521 -8.0768 17 14 8.1315 0.8878 -5.8371 18 1 8.8601 -0.3773 -5.5652 19 1 8.9846 1.7836 -6.6587 20 1 7.8048 1.5568 -4.5522 21 6 3.6320 -0.7640 -3.1654 22 6 2.0400 -0.7211 1.2493 23 6 3.5700 -0.7206 1.2496 24 6 1.5300 0.0001 2.4985 25 6 1.5301 -2.1636 1.2493 26 1 -0.3634 0.4632 -0.9174 27 1 -0.3633 -1.0260 0.0575 28 1 -0.3634 0.5629 0.8598 29 1 3.2671 1.8272 -1.4456 30 1 4.3695 0.7528 -0.5432 31 1 5.9144 0.6675 -2.2969 32 1 5.1291 2.2019 -2.7951 33 1 6.2232 -1.9126 -4.2378 34 1 7.3976 -0.7220 -4.8472 35 1 6.7451 -0.5650 -3.1987 36 1 7.3825 0.6042 -8.5656 37 1 2.8226 -1.1135 -3.8063 38 1 4.3313 -1.5744 -2.9600 39 1 3.9329 0.3072 1.2498 40 1 3.9333 -1.2347 2.1394 41 1 3.9337 -1.2342 0.3597 42 1 0.4400 0.0001 2.4985 43 1 1.8929 -0.5139 3.3885 44 1 1.8933 1.0278 2.4984 45 1 1.8934 -2.6775 0.3593 46 1 1.8937 -2.6776 2.1390 47 1 0.4400 -2.1637 1.2493 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971795589.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:23 Heat of formation + Delta-G solvation = -14.324296 kcal Electronic energy + Delta-G solvation = -24004.842279 eV Core-core repulsion = 20802.387016 eV Total energy + Delta-G solvation = -3202.455263 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.50176 -38.19535 -36.74948 -35.02243 -31.87923 -31.17018 -30.14048 -28.72035 -27.46118 -27.24014 -26.25216 -24.85271 -23.10411 -22.41595 -19.99221 -19.45310 -17.93364 -17.11452 -17.03400 -16.32150 -15.78316 -15.16040 -14.73308 -14.53839 -14.09327 -13.89793 -13.45403 -13.35036 -13.13803 -12.87035 -12.70240 -12.51965 -12.36338 -12.22226 -12.20112 -12.04948 -11.95248 -11.70155 -11.49353 -11.37466 -11.07887 -11.02573 -10.80431 -10.68754 -10.55701 -10.53752 -10.14935 -9.91373 -9.54714 -9.44684 -8.62580 -8.35771 -6.97646 -6.03070 -3.46245 2.79955 3.18151 3.25049 3.41047 3.45369 4.43016 4.45239 4.51882 4.58535 4.77160 4.89479 5.09209 5.14937 5.15712 5.21316 5.26520 5.31740 5.40494 5.43907 5.54520 5.56490 5.66726 5.70683 5.71517 5.74797 5.78954 5.80684 5.87995 5.94204 5.98758 6.04793 6.10098 6.20056 6.23788 6.31919 6.34851 6.37196 6.49418 6.60415 6.64814 6.77156 7.76954 7.94901 8.29266 8.38302 8.88129 9.63223 9.99615 11.12299 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033384 B = 0.004129 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.513974 B = 6779.927003 C = 7064.567335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.098 4.098 3 H 0.086 0.914 4 C 0.533 3.467 5 O -0.543 6.543 6 N -0.613 5.613 7 C 0.098 3.902 8 C -0.158 4.158 9 C 0.173 3.827 10 H 0.087 0.913 11 N -0.596 5.596 12 C 0.102 3.898 13 C -0.272 4.272 14 H 0.084 0.916 15 C 0.032 3.968 16 N -0.902 5.902 17 Si 0.894 3.106 18 H -0.286 1.286 19 H -0.304 1.304 20 H -0.271 1.271 21 C 0.088 3.912 22 C -0.055 4.055 23 C -0.150 4.150 24 C -0.140 4.140 25 C -0.148 4.148 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.019 0.981 34 H 0.049 0.951 35 H 0.034 0.966 36 H 0.264 0.736 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.056 0.944 44 H 0.055 0.945 45 H 0.068 0.932 46 H 0.050 0.950 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.423 1.409 21.229 22.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.120 4.120 3 H 0.104 0.896 4 C 0.322 3.678 5 O -0.420 6.420 6 N -0.347 5.347 7 C -0.025 4.025 8 C -0.198 4.198 9 C 0.064 3.936 10 H 0.105 0.895 11 N -0.318 5.318 12 C -0.042 4.042 13 C -0.400 4.400 14 H 0.101 0.899 15 C -0.169 4.169 16 N -0.544 5.544 17 Si 0.726 3.274 18 H -0.215 1.215 19 H -0.233 1.233 20 H -0.196 1.196 21 C -0.036 4.036 22 C -0.055 4.055 23 C -0.207 4.207 24 C -0.198 4.198 25 C -0.205 4.205 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.037 0.963 34 H 0.067 0.933 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.087 0.913 46 H 0.069 0.931 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.669 0.853 20.860 22.241 hybrid contribution 1.146 0.301 0.387 1.247 sum -6.522 1.154 21.246 22.255 Atomic orbital electron populations 1.21779 0.92774 1.03294 1.01837 1.21357 0.97835 0.99962 0.92797 0.89610 1.20190 0.78722 0.84627 0.84254 1.90666 1.57721 1.24885 1.68776 1.48543 1.29808 1.31109 1.25271 1.22159 0.93234 0.88327 0.98773 1.23240 0.97950 1.02332 0.96287 1.21556 0.90960 0.91935 0.89178 0.89451 1.43960 1.25065 1.56909 1.05855 1.21447 0.91780 0.94145 0.96859 1.18851 0.94520 1.43946 0.82719 0.89890 1.25396 0.98148 0.98176 0.95141 1.69830 1.27854 1.50671 1.06005 0.86776 0.83706 0.77189 0.79776 1.21488 1.23277 1.19613 1.22889 0.98200 0.98489 0.84065 1.20412 0.95585 0.96118 0.93411 1.22069 0.94421 1.01912 1.02277 1.21912 1.01330 1.00028 0.96487 1.22009 1.01423 0.94797 1.02238 0.92536 0.91070 0.91757 0.91830 0.91534 0.90642 0.90244 0.96286 0.93332 0.94772 0.92579 0.90786 0.91760 0.92263 0.92359 0.92235 0.92142 0.92452 0.92574 0.91320 0.93085 0.92182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.16 37.16 0.30 -1.13 16 2 C -0.10 -1.08 1.82 -91.78 -0.17 -1.25 16 3 H 0.09 0.84 6.74 -51.93 -0.35 0.49 16 4 C 0.53 8.01 5.12 -10.99 -0.06 7.96 16 5 O -0.54 -10.03 14.99 5.56 0.08 -9.95 16 6 N -0.61 -9.23 3.05 -170.53 -0.52 -9.75 16 7 C 0.10 1.23 5.82 -3.07 -0.02 1.21 16 8 C -0.16 -2.42 6.50 -24.90 -0.16 -2.58 16 9 C 0.17 3.26 3.55 -65.78 -0.23 3.03 16 10 H 0.09 1.70 7.96 -51.93 -0.41 1.29 16 11 N -0.60 -13.69 2.60 -171.03 -0.45 -14.13 16 12 C 0.10 2.17 8.40 59.85 0.50 2.67 16 13 C -0.27 -7.45 9.94 -15.06 -0.15 -7.60 16 14 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 15 C 0.03 0.90 5.36 -17.43 -0.09 0.80 16 16 N -0.90 -27.26 13.97 55.49 0.78 -26.48 16 17 Si 0.89 21.88 24.82 -169.99 -4.22 17.66 16 18 H -0.29 -6.82 6.55 56.52 0.37 -6.45 16 19 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 C 0.09 1.56 6.49 -2.53 -0.02 1.55 16 22 C -0.05 -0.53 0.57 -154.51 -0.09 -0.62 16 23 C -0.15 -1.47 7.01 37.16 0.26 -1.21 16 24 C -0.14 -1.06 8.12 37.16 0.30 -0.76 16 25 C -0.15 -1.61 7.67 37.15 0.28 -1.32 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.80 6.10 -51.93 -0.32 0.48 16 28 H 0.06 0.51 6.61 -51.93 -0.34 0.17 16 29 H 0.06 0.69 7.66 -51.93 -0.40 0.29 16 30 H 0.07 0.72 5.40 -51.92 -0.28 0.44 16 31 H 0.08 1.18 5.94 -51.93 -0.31 0.87 16 32 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.02 0.39 7.99 -51.93 -0.42 -0.02 16 34 H 0.05 1.13 2.59 -51.93 -0.13 0.99 16 35 H 0.03 0.63 5.93 -51.93 -0.31 0.32 16 36 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 37 H 0.07 1.44 8.08 -51.93 -0.42 1.02 16 38 H 0.06 1.19 7.21 -51.93 -0.37 0.81 16 39 H 0.06 0.51 6.86 -51.93 -0.36 0.16 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.71 6.75 -51.93 -0.35 0.36 16 42 H 0.06 0.43 6.50 -51.93 -0.34 0.09 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.07 0.94 6.24 -51.93 -0.32 0.62 16 46 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.06 0.63 6.36 -51.92 -0.33 0.30 16 LS Contribution 340.84 15.07 5.14 5.14 Total: -1.00 -31.01 340.84 -6.41 -37.42 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -7.88 Total: -0.67 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: 0.67 Total: 0.76 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: -0.19 Total: -50.36 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.08 Total: -9.95 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.22 Total: 17.66 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.01 -6.41 -37.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971795589.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.092 kcal (2) G-P(sol) polarization free energy of solvation -31.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds