Wall clock time and date at job start Tue Mar 31 2020 05:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47224 * 2 1 4 4 C 1.50694 * 109.47331 * 239.99452 * 2 1 3 5 5 O 1.21280 * 119.99895 * 253.62456 * 4 2 1 6 6 N 1.34773 * 120.00154 * 73.62359 * 4 2 1 7 7 C 1.48217 * 119.97086 * 356.74139 * 6 4 2 8 8 C 1.47136 * 110.34499 * 102.50963 * 7 6 4 9 9 C 1.53797 * 111.84138 * 58.29770 * 8 7 6 10 10 N 1.43462 * 107.95982 * 281.66936 * 9 8 7 11 11 C 1.36942 * 118.93956 * 273.60808 * 10 9 8 12 12 H 1.08001 * 119.99695 * 36.24874 * 11 10 9 13 13 C 1.38807 * 119.99998 * 216.25243 * 11 10 9 14 14 N 1.31618 * 120.00380 * 24.13078 * 13 11 10 15 15 Si 1.86800 * 119.99694 * 204.13746 * 13 11 10 16 16 H 1.48504 * 109.47373 * 269.99544 * 15 13 11 17 17 H 1.48504 * 109.47390 * 150.00199 * 15 13 11 18 18 H 1.48497 * 109.47499 * 29.99602 * 15 13 11 19 19 C 1.48860 * 122.12274 * 93.88952 * 10 9 8 20 20 C 1.43622 * 119.97221 * 176.75990 * 6 4 2 21 21 C 1.53005 * 109.47031 * 119.99366 * 2 1 3 22 22 C 1.52998 * 109.47300 * 180.02562 * 21 2 1 23 23 C 1.53005 * 109.46977 * 300.00187 * 21 2 1 24 24 C 1.52999 * 109.47145 * 59.99876 * 21 2 1 25 25 H 1.08998 * 109.46647 * 184.38743 * 1 2 3 26 26 H 1.08994 * 109.46916 * 304.39098 * 1 2 3 27 27 H 1.09001 * 109.46635 * 64.38911 * 1 2 3 28 28 H 1.09004 * 109.31906 * 342.24259 * 7 6 4 29 29 H 1.08996 * 109.17882 * 222.69329 * 7 6 4 30 30 H 1.09004 * 109.00316 * 297.69347 * 8 7 6 31 31 H 1.08999 * 109.01120 * 178.91015 * 8 7 6 32 32 H 1.08999 * 109.76457 * 162.04918 * 9 8 7 33 33 H 1.09003 * 109.80438 * 41.30569 * 9 8 7 34 34 H 0.97006 * 119.99691 * 5.92127 * 14 13 11 35 35 H 1.08993 * 109.48122 * 80.34743 * 19 10 9 36 36 H 1.08999 * 109.47809 * 200.38118 * 19 10 9 37 37 H 1.09001 * 108.87704 * 31.42149 * 20 6 4 38 38 H 1.08991 * 108.87608 * 149.96529 * 20 6 4 39 39 H 1.09007 * 109.46997 * 60.00013 * 22 21 2 40 40 H 1.08993 * 109.46877 * 179.97438 * 22 21 2 41 41 H 1.08994 * 109.47001 * 300.00410 * 22 21 2 42 42 H 1.09000 * 109.46924 * 59.99965 * 23 21 2 43 43 H 1.09001 * 109.46969 * 179.97438 * 23 21 2 44 44 H 1.08995 * 109.46802 * 299.99730 * 23 21 2 45 45 H 1.09010 * 109.46804 * 60.00101 * 24 21 2 46 46 H 1.08997 * 109.47212 * 179.97438 * 24 21 2 47 47 H 1.09000 * 109.47435 * 300.00450 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 2.5137 -1.8197 -1.1360 6 7 1.9468 -0.1133 -2.4355 7 6 1.2933 1.2110 -2.5609 8 6 2.3058 2.2716 -2.6826 9 6 3.2271 2.0470 -3.8934 10 7 4.1882 1.0431 -3.5378 11 6 5.3393 1.4238 -2.9011 12 1 5.3171 2.2278 -2.1803 13 6 6.5345 0.7763 -3.1821 14 7 6.6952 0.1623 -4.3351 15 14 7.9150 0.7763 -1.9236 16 1 8.7889 1.9559 -2.1474 17 1 8.7151 -0.4666 -2.0665 18 1 7.3386 0.8396 -0.5565 19 6 3.9775 -0.3983 -3.8441 20 6 2.4886 -0.7611 -3.5973 21 6 2.0400 -0.7211 1.2494 22 6 3.5700 -0.7206 1.2498 23 6 1.5300 0.0003 2.4985 24 6 1.5300 -2.1636 1.2495 25 1 -0.3632 -1.0247 0.0786 26 1 -0.3633 0.5804 0.8480 27 1 -0.3632 0.4442 -0.9267 28 1 0.6812 1.3962 -1.6781 29 1 0.6587 1.2147 -3.4470 30 1 2.9101 2.2912 -1.7756 31 1 1.8025 3.2321 -2.7928 32 1 3.7397 2.9758 -4.1439 33 1 2.6394 1.7087 -4.7469 34 1 6.0139 0.2341 -5.0219 35 1 4.2337 -0.5898 -4.8861 36 1 4.6114 -1.0040 -3.1965 37 1 2.4048 -1.8404 -3.4705 38 1 1.9080 -0.4628 -4.4702 39 1 3.9330 0.3072 1.2499 40 1 3.9332 -1.2339 2.1400 41 1 3.9337 -1.2342 0.3599 42 1 0.4400 0.0002 2.4985 43 1 1.8929 -0.5137 3.3886 44 1 1.8933 1.0279 2.4984 45 1 1.8934 -2.6776 0.3595 46 1 1.8937 -2.6775 2.1393 47 1 0.4400 -2.1636 1.2495 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981457555.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:00 Heat of formation + Delta-G solvation = -17.592103 kcal Electronic energy + Delta-G solvation = -25172.162360 eV Core-core repulsion = 21969.565394 eV Total energy + Delta-G solvation = -3202.596966 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.43307 -37.82497 -36.22844 -34.60406 -32.35951 -31.57955 -30.38018 -27.72466 -27.08901 -26.87928 -25.33900 -24.39059 -23.41196 -21.91513 -19.90073 -19.11195 -17.97294 -17.25033 -16.66485 -15.85724 -15.17822 -14.75536 -14.33877 -14.09304 -13.99395 -13.75531 -13.65657 -13.41005 -13.22873 -12.65179 -12.59271 -12.27006 -12.10093 -11.87272 -11.81912 -11.57574 -11.44543 -11.14856 -11.01946 -10.84862 -10.73832 -10.64463 -10.40542 -10.32261 -10.27825 -10.21804 -10.17416 -9.97922 -9.29247 -8.83638 -8.27677 -8.04125 -6.76630 -5.98077 -3.29980 3.12001 3.50188 3.53264 3.57343 3.71430 4.63316 4.69091 4.79088 4.97205 5.10443 5.25668 5.32331 5.38138 5.46536 5.46634 5.53065 5.60539 5.75092 5.77406 5.78349 5.85808 5.89871 5.93169 6.04960 6.06692 6.11217 6.12471 6.14036 6.27022 6.33046 6.33422 6.37245 6.41138 6.49875 6.74775 6.77148 6.82183 6.85713 6.95188 7.12895 7.29025 7.93069 8.16263 8.64473 8.76446 9.22923 9.88155 10.32807 11.23172 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016287 B = 0.007305 C = 0.006046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.768716 B = 3832.117755 C = 4630.075868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.100 4.100 3 H 0.090 0.910 4 C 0.526 3.474 5 O -0.538 6.538 6 N -0.584 5.584 7 C 0.114 3.886 8 C -0.172 4.172 9 C 0.164 3.836 10 N -0.591 5.591 11 C -0.356 4.356 12 H 0.046 0.954 13 C -0.013 4.013 14 N -0.910 5.910 15 Si 1.059 2.941 16 H -0.294 1.294 17 H -0.286 1.286 18 H -0.292 1.292 19 C 0.143 3.857 20 C 0.097 3.903 21 C -0.045 4.045 22 C -0.148 4.148 23 C -0.142 4.142 24 C -0.161 4.161 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.046 0.954 33 H 0.029 0.971 34 H 0.268 0.732 35 H 0.031 0.969 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.056 0.944 39 H 0.049 0.951 40 H 0.048 0.952 41 H 0.076 0.924 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.052 0.948 45 H 0.099 0.901 46 H 0.043 0.957 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.387 1.201 7.737 16.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.121 4.121 3 H 0.108 0.892 4 C 0.315 3.685 5 O -0.416 6.416 6 N -0.315 5.315 7 C -0.008 4.008 8 C -0.213 4.213 9 C 0.036 3.964 10 N -0.313 5.313 11 C -0.485 4.485 12 H 0.064 0.936 13 C -0.217 4.217 14 N -0.548 5.548 15 Si 0.889 3.111 16 H -0.222 1.222 17 H -0.212 1.212 18 H -0.218 1.218 19 C 0.017 3.983 20 C -0.028 4.028 21 C -0.045 4.045 22 C -0.205 4.205 23 C -0.199 4.199 24 C -0.218 4.218 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.098 0.902 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.047 0.953 34 H 0.079 0.921 35 H 0.049 0.951 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.095 0.905 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.117 0.883 46 H 0.062 0.938 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -12.612 0.011 8.077 14.976 hybrid contribution -1.434 0.942 -0.307 1.743 sum -14.046 0.953 7.770 16.080 Atomic orbital electron populations 1.22028 0.93683 1.02881 1.02244 1.21317 0.96752 1.00634 0.93413 0.89160 1.20378 0.78047 0.85885 0.84208 1.90491 1.45819 1.20211 1.85080 1.47353 1.57022 1.19551 1.07609 1.20952 0.94977 0.83035 1.01823 1.21885 0.98834 0.96672 1.03883 1.20274 0.90730 0.93070 0.92336 1.43630 1.19215 0.99807 1.68686 1.19757 0.86598 1.22259 1.19919 0.93603 1.25871 0.98213 0.98342 0.99230 1.70764 1.35771 1.45028 1.03253 0.83640 0.75743 0.76382 0.75323 1.22170 1.21160 1.21800 1.22092 0.91963 0.85962 0.98331 1.21761 0.96894 0.97509 0.86612 1.20256 0.96182 0.95631 0.92471 1.21968 0.93914 1.01726 1.02875 1.21943 1.00638 1.00117 0.97181 1.22340 0.99671 0.95760 1.04002 0.91707 0.91557 0.91920 0.90248 0.91908 0.91417 0.92618 0.93525 0.95279 0.92089 0.95085 0.91782 0.90894 0.92550 0.93221 0.93272 0.90523 0.92708 0.92724 0.92868 0.88302 0.93839 0.93764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.04 37.16 0.30 -1.39 16 2 C -0.10 -1.43 1.25 -91.77 -0.11 -1.55 16 3 H 0.09 1.33 7.53 -51.93 -0.39 0.94 16 4 C 0.53 9.45 6.23 -10.99 -0.07 9.38 16 5 O -0.54 -11.17 11.11 5.56 0.06 -11.11 16 6 N -0.58 -10.22 2.46 -176.44 -0.43 -10.66 16 7 C 0.11 1.64 5.01 -5.91 -0.03 1.62 16 8 C -0.17 -2.83 5.64 -29.13 -0.16 -3.00 16 9 C 0.16 3.30 5.63 -5.24 -0.03 3.27 16 10 N -0.59 -14.34 2.25 -171.78 -0.39 -14.73 16 11 C -0.36 -9.86 9.01 -15.06 -0.14 -9.99 16 12 H 0.05 1.30 7.94 -52.49 -0.42 0.88 16 13 C -0.01 -0.37 4.71 -17.43 -0.08 -0.45 16 14 N -0.91 -27.48 12.93 55.49 0.72 -26.77 16 15 Si 1.06 26.08 29.98 -169.99 -5.10 20.98 16 16 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 17 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 C 0.14 3.34 5.23 -1.56 -0.01 3.33 16 20 C 0.10 1.84 5.29 -4.39 -0.02 1.82 16 21 C -0.04 -0.64 0.54 -154.50 -0.08 -0.72 16 22 C -0.15 -2.47 8.18 37.16 0.30 -2.16 16 23 C -0.14 -1.62 8.12 37.16 0.30 -1.31 16 24 C -0.16 -2.29 7.83 37.16 0.29 -2.00 16 25 H 0.06 0.74 6.20 -51.93 -0.32 0.42 16 26 H 0.07 0.62 6.67 -51.93 -0.35 0.27 16 27 H 0.06 0.65 5.72 -51.93 -0.30 0.35 16 28 H 0.08 0.96 4.13 -51.93 -0.21 0.75 16 29 H 0.06 0.80 8.05 -51.93 -0.42 0.38 16 30 H 0.07 1.30 7.91 -51.93 -0.41 0.89 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.99 8.02 -51.93 -0.42 0.57 16 33 H 0.03 0.54 7.59 -51.93 -0.39 0.15 16 34 H 0.27 8.12 6.63 -40.82 -0.27 7.85 16 35 H 0.03 0.76 7.16 -51.93 -0.37 0.39 16 36 H 0.06 1.75 7.49 -51.93 -0.39 1.36 16 37 H 0.07 1.40 7.32 -51.93 -0.38 1.02 16 38 H 0.06 0.94 7.72 -51.93 -0.40 0.54 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.08 1.55 6.03 -51.93 -0.31 1.24 16 42 H 0.05 0.55 6.53 -51.93 -0.34 0.21 16 43 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.10 1.69 5.07 -51.92 -0.26 1.43 16 46 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.04 0.55 6.33 -51.93 -0.33 0.22 16 LS Contribution 339.64 15.07 5.12 5.12 Total: -1.00 -31.17 339.64 -7.58 -38.75 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -8.01 Total: 1.55 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: 0.46 Total: -3.15 kcal Atomic # 7 Polarization: -52.05 SS G_CDS: -0.10 Total: -52.15 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.06 Total: -11.11 kcal Atomic # 14 Polarization: 26.08 SS G_CDS: -5.10 Total: 20.98 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.17 -7.58 -38.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981457555.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.156 kcal (2) G-P(sol) polarization free energy of solvation -31.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds