Wall clock time and date at job start Tue Mar 31 2020 05:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47067 * 2 1 4 4 C 1.50698 * 109.47245 * 119.99601 * 2 1 3 5 5 O 1.21280 * 120.00278 * 113.86730 * 4 2 1 6 6 N 1.34782 * 120.00134 * 293.86705 * 4 2 1 7 7 C 1.48215 * 119.96859 * 6.29594 * 6 4 2 8 8 C 1.47141 * 110.34208 * 102.46762 * 7 6 4 9 9 C 1.53799 * 111.83723 * 58.29643 * 8 7 6 10 10 N 1.43456 * 107.96468 * 281.66548 * 9 8 7 11 11 C 1.36943 * 118.94050 * 273.61300 * 10 9 8 12 12 H 1.07996 * 119.99708 * 24.04070 * 11 10 9 13 13 C 1.38808 * 119.99950 * 204.03226 * 11 10 9 14 14 N 1.31613 * 120.00398 * 205.61634 * 13 11 10 15 15 Si 1.86802 * 119.99997 * 25.61778 * 13 11 10 16 16 H 1.48495 * 109.47455 * 265.75645 * 15 13 11 17 17 H 1.48505 * 109.47463 * 145.75385 * 15 13 11 18 18 H 1.48510 * 109.46964 * 25.75628 * 15 13 11 19 19 C 1.48861 * 122.12173 * 93.88498 * 10 9 8 20 20 C 1.43624 * 119.97049 * 186.27456 * 6 4 2 21 21 C 1.52995 * 109.47613 * 239.99635 * 2 1 3 22 22 C 1.53005 * 109.47009 * 300.00229 * 21 2 1 23 23 C 1.52999 * 109.46992 * 59.99753 * 21 2 1 24 24 C 1.52996 * 109.47344 * 179.97438 * 21 2 1 25 25 H 1.09006 * 109.46724 * 186.49846 * 1 2 3 26 26 H 1.08994 * 109.47520 * 306.48971 * 1 2 3 27 27 H 1.08998 * 109.47134 * 66.49869 * 1 2 3 28 28 H 1.08999 * 109.32506 * 342.20651 * 7 6 4 29 29 H 1.08993 * 109.18344 * 222.64588 * 7 6 4 30 30 H 1.08998 * 109.00938 * 297.69480 * 8 7 6 31 31 H 1.08992 * 109.00867 * 178.90243 * 8 7 6 32 32 H 1.09003 * 109.75965 * 162.04950 * 9 8 7 33 33 H 1.08999 * 109.80721 * 41.31209 * 9 8 7 34 34 H 0.97003 * 119.99959 * 5.10344 * 14 13 11 35 35 H 1.09009 * 109.47445 * 80.35168 * 19 10 9 36 36 H 1.08990 * 109.48550 * 200.38449 * 19 10 9 37 37 H 1.09002 * 108.87543 * 31.46958 * 20 6 4 38 38 H 1.08999 * 108.87141 * 149.90155 * 20 6 4 39 39 H 1.09001 * 109.47099 * 59.99720 * 22 21 2 40 40 H 1.09000 * 109.46492 * 179.97438 * 22 21 2 41 41 H 1.08996 * 109.46547 * 299.99208 * 22 21 2 42 42 H 1.09000 * 109.47133 * 60.00021 * 23 21 2 43 43 H 1.08997 * 109.47270 * 180.02562 * 23 21 2 44 44 H 1.09001 * 109.47358 * 300.00428 * 23 21 2 45 45 H 1.08990 * 109.47217 * 60.00196 * 24 21 2 46 46 H 1.09002 * 109.47034 * 180.02562 * 24 21 2 47 47 H 1.09000 * 109.47003 * 300.00115 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.6352 -1.7572 1.1228 6 7 1.8117 -0.1822 2.4508 7 6 0.9573 1.0204 2.5936 8 6 -0.3785 0.6437 3.0824 9 6 -0.3079 -0.0885 4.4330 10 7 0.0833 -1.4455 4.1808 11 6 -0.8826 -2.3689 3.8816 12 1 -1.8244 -2.0484 3.4614 13 6 -0.6511 -3.7170 4.1181 14 7 -1.2912 -4.6278 3.4161 15 14 0.5690 -4.2384 5.4330 16 1 1.8986 -4.4663 4.8122 17 1 0.1003 -5.4935 6.0736 18 1 0.6782 -3.1700 6.4587 19 6 1.5048 -1.8834 4.2397 20 6 2.4045 -0.7856 3.6115 21 6 2.0401 -0.7213 -1.2491 22 6 1.5301 -2.1638 -1.2491 23 6 1.5301 -0.0001 -2.4984 24 6 3.5701 -0.7207 -1.2494 25 1 -0.3633 -1.0211 0.1163 26 1 -0.3634 0.6111 0.8261 27 1 -0.3633 0.4098 -0.9424 28 1 0.8617 1.5120 1.6255 29 1 1.4204 1.7066 3.3025 30 1 -0.8538 -0.0084 2.3496 31 1 -0.9812 1.5443 3.1979 32 1 -1.2861 -0.0702 4.9136 33 1 0.4278 0.3937 5.0766 34 1 -1.8683 -4.3590 2.6843 35 1 1.7930 -2.0435 5.2788 36 1 1.6224 -2.8126 3.6825 37 1 3.3588 -1.2303 3.3293 38 1 2.5852 -0.0119 4.3577 39 1 0.4401 -2.1638 -1.2491 40 1 1.8932 -2.6775 -2.1392 41 1 1.8935 -2.6775 -0.3591 42 1 1.8934 1.0275 -2.4985 43 1 1.8931 -0.5142 -3.3883 44 1 0.4401 -0.0001 -2.4985 45 1 3.9337 -1.2342 -0.3595 46 1 3.9334 -1.2342 -2.1396 47 1 3.9330 0.3071 -1.2496 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981457556.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:02 Heat of formation + Delta-G solvation = -6.201547 kcal Electronic energy + Delta-G solvation = -25311.906983 eV Core-core repulsion = 22109.803948 eV Total energy + Delta-G solvation = -3202.103034 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.50527 -37.88117 -36.28510 -34.61490 -32.50908 -31.74534 -30.54760 -27.89314 -27.13973 -26.88558 -25.81765 -24.19790 -22.85746 -22.35884 -19.86981 -19.33762 -17.76365 -17.30591 -16.78399 -16.10683 -15.19373 -14.76889 -14.46354 -14.41102 -14.05467 -13.89546 -13.62017 -13.42303 -13.09331 -12.99623 -12.48099 -12.29168 -11.98165 -11.95803 -11.76642 -11.61279 -11.45641 -11.34011 -10.98544 -10.95335 -10.83293 -10.70315 -10.55749 -10.33487 -10.26408 -10.14427 -9.88048 -9.69543 -9.15686 -8.87020 -8.41885 -8.07844 -6.90966 -6.25922 -3.20490 3.08453 3.49509 3.51648 3.59065 3.73494 4.68665 4.69199 4.78936 4.96868 5.01405 5.13347 5.28683 5.43877 5.47615 5.50979 5.52941 5.55124 5.64560 5.72492 5.73978 5.87790 5.89381 5.92253 5.96761 6.00842 6.05058 6.12611 6.16634 6.23732 6.24872 6.30558 6.32562 6.40717 6.50186 6.52314 6.66503 6.70356 6.78812 6.89021 6.95972 7.20224 7.88608 8.09973 8.52737 8.74032 9.09855 9.75268 10.21645 11.18699 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019017 B = 0.006917 C = 0.006342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.984162 B = 4047.034084 C = 4414.006700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.095 4.095 3 H 0.085 0.915 4 C 0.523 3.477 5 O -0.531 6.531 6 N -0.587 5.587 7 C 0.119 3.881 8 C -0.180 4.180 9 C 0.163 3.837 10 N -0.596 5.596 11 C -0.349 4.349 12 H 0.065 0.935 13 C -0.007 4.007 14 N -0.914 5.914 15 Si 1.049 2.951 16 H -0.294 1.294 17 H -0.301 1.301 18 H -0.288 1.288 19 C 0.109 3.891 20 C 0.104 3.896 21 C -0.046 4.046 22 C -0.157 4.157 23 C -0.142 4.142 24 C -0.149 4.149 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.033 0.967 34 H 0.263 0.737 35 H 0.033 0.967 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.048 0.952 40 H 0.043 0.957 41 H 0.093 0.907 42 H 0.050 0.950 43 H 0.054 0.946 44 H 0.058 0.942 45 H 0.078 0.922 46 H 0.049 0.951 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.498 14.319 -6.464 17.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.116 4.116 3 H 0.103 0.897 4 C 0.311 3.689 5 O -0.408 6.408 6 N -0.319 5.319 7 C -0.003 4.003 8 C -0.221 4.221 9 C 0.035 3.965 10 N -0.319 5.319 11 C -0.478 4.478 12 H 0.083 0.917 13 C -0.208 4.208 14 N -0.552 5.552 15 Si 0.881 3.119 16 H -0.222 1.222 17 H -0.230 1.230 18 H -0.215 1.215 19 C -0.017 4.017 20 C -0.021 4.021 21 C -0.046 4.046 22 C -0.214 4.214 23 C -0.199 4.199 24 C -0.206 4.206 25 H 0.087 0.913 26 H 0.093 0.907 27 H 0.081 0.919 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.052 0.948 34 H 0.073 0.927 35 H 0.050 0.950 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.112 0.888 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.097 0.903 46 H 0.068 0.932 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 7.445 12.460 -5.725 15.603 hybrid contribution -0.790 1.429 -0.765 1.803 sum 6.655 13.889 -6.490 16.712 Atomic orbital electron populations 1.22267 0.93029 1.04014 1.02555 1.21267 0.97655 0.99540 0.93183 0.89731 1.20452 0.79179 0.84924 0.84323 1.90539 1.42218 1.22175 1.85897 1.47348 1.49386 1.29089 1.06061 1.20856 0.91766 0.86423 1.01256 1.22055 0.96241 1.00710 1.03051 1.20263 0.98170 0.85685 0.92377 1.43914 1.01249 1.05263 1.81467 1.20118 0.98012 0.88545 1.41087 0.91747 1.26036 1.01555 0.91574 1.01674 1.70853 1.30309 1.34871 1.19215 0.84065 0.75660 0.74804 0.77409 1.22233 1.22951 1.21459 1.22538 0.84393 0.97387 0.97417 1.21622 0.96722 0.96625 0.87167 1.20263 0.95688 0.96078 0.92595 1.22212 1.00473 0.95133 1.03572 1.21960 1.01171 0.99672 0.97136 1.22029 0.94595 1.00789 1.03151 0.91288 0.90735 0.91883 0.90511 0.91907 0.90321 0.92467 0.93200 0.94835 0.92717 0.94992 0.90592 0.90854 0.92081 0.93256 0.93810 0.88823 0.93100 0.92732 0.92343 0.90276 0.93229 0.93901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 7.51 37.16 0.28 -2.00 16 2 C -0.10 -1.35 1.27 -91.78 -0.12 -1.47 16 3 H 0.08 1.03 7.44 -51.93 -0.39 0.64 16 4 C 0.52 9.36 6.38 -10.98 -0.07 9.29 16 5 O -0.53 -11.22 11.02 5.56 0.06 -11.16 16 6 N -0.59 -10.01 2.46 -176.43 -0.43 -10.44 16 7 C 0.12 1.64 5.02 -5.91 -0.03 1.61 16 8 C -0.18 -2.84 4.95 -29.13 -0.14 -2.98 16 9 C 0.16 3.10 5.63 -5.24 -0.03 3.08 16 10 N -0.60 -13.97 2.33 -171.79 -0.40 -14.37 16 11 C -0.35 -9.75 9.53 -15.06 -0.14 -9.89 16 12 H 0.06 1.92 8.06 -52.49 -0.42 1.50 16 13 C -0.01 -0.19 5.08 -17.43 -0.09 -0.28 16 14 N -0.91 -28.90 13.70 55.49 0.76 -28.14 16 15 Si 1.05 27.06 24.48 -169.99 -4.16 22.90 16 16 H -0.29 -7.40 6.76 56.52 0.38 -7.02 16 17 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 18 H -0.29 -7.00 6.61 56.52 0.37 -6.63 16 19 C 0.11 2.42 4.57 -1.57 -0.01 2.42 16 20 C 0.10 1.88 5.21 -4.39 -0.02 1.85 16 21 C -0.05 -0.64 0.54 -154.51 -0.08 -0.72 16 22 C -0.16 -2.57 7.83 37.16 0.29 -2.28 16 23 C -0.14 -1.59 8.13 37.16 0.30 -1.29 16 24 C -0.15 -2.03 8.18 37.16 0.30 -1.72 16 25 H 0.07 1.20 6.79 -51.93 -0.35 0.85 16 26 H 0.07 1.01 3.45 -51.93 -0.18 0.84 16 27 H 0.06 0.74 6.10 -51.93 -0.32 0.43 16 28 H 0.08 0.90 4.82 -51.93 -0.25 0.65 16 29 H 0.06 0.75 8.05 -51.93 -0.42 0.33 16 30 H 0.08 1.47 5.98 -51.93 -0.31 1.16 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.98 8.02 -51.93 -0.42 0.57 16 33 H 0.03 0.57 7.59 -51.93 -0.39 0.18 16 34 H 0.26 8.27 8.73 -40.82 -0.36 7.91 16 35 H 0.03 0.70 5.98 -51.92 -0.31 0.39 16 36 H 0.08 1.97 5.60 -51.93 -0.29 1.68 16 37 H 0.07 1.32 7.47 -51.93 -0.39 0.93 16 38 H 0.06 0.93 7.73 -51.93 -0.40 0.53 16 39 H 0.05 0.81 6.58 -51.93 -0.34 0.47 16 40 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.09 1.88 5.29 -51.93 -0.27 1.61 16 42 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.64 6.29 -51.93 -0.33 0.31 16 45 H 0.08 1.28 5.74 -51.93 -0.30 0.99 16 46 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 328.86 15.07 4.96 4.96 Total: -1.00 -32.19 328.86 -6.59 -38.78 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -7.82 Total: 1.87 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: 0.44 Total: -4.40 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: -0.07 Total: -52.95 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.06 Total: -11.16 kcal Atomic # 14 Polarization: 27.06 SS G_CDS: -4.16 Total: 22.90 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.19 -6.59 -38.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981457556.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.577 kcal (2) G-P(sol) polarization free energy of solvation -32.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds