Wall clock time and date at job start Tue Mar 31 2020 05:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46924 * 2 1 4 4 C 1.53000 * 109.47163 * 119.99577 * 2 1 3 5 5 H 1.09001 * 109.47049 * 300.00477 * 4 2 1 6 6 C 1.52996 * 109.47042 * 60.00044 * 4 2 1 7 7 C 1.50696 * 109.47193 * 180.02562 * 4 2 1 8 8 O 1.21278 * 120.00089 * 328.96613 * 7 4 2 9 9 N 1.34778 * 119.99979 * 148.96538 * 7 4 2 10 10 C 1.46926 * 120.63160 * 4.91742 * 9 7 4 11 11 C 1.53625 * 108.54069 * 126.36712 * 10 9 7 12 12 C 1.53043 * 109.24379 * 54.85677 * 11 10 9 13 13 N 1.46500 * 109.44766 * 178.49122 * 12 11 10 14 14 C 1.46502 * 119.99684 * 60.06420 * 13 12 11 15 15 C 1.36932 * 120.00419 * 240.06097 * 13 12 11 16 16 H 1.08004 * 119.99663 * 22.81092 * 15 13 12 17 17 C 1.38810 * 120.00398 * 202.81774 * 15 13 12 18 18 N 1.31617 * 119.99890 * 11.82991 * 17 15 13 19 19 Si 1.86799 * 120.00134 * 191.83931 * 17 15 13 20 20 H 1.48498 * 109.47255 * 359.97438 * 19 17 15 21 21 H 1.48507 * 109.47146 * 119.99735 * 19 17 15 22 22 H 1.48499 * 109.47189 * 239.99294 * 19 17 15 23 23 C 1.53037 * 109.53725 * 298.50837 * 12 11 10 24 24 C 1.46927 * 120.62980 * 185.19206 * 9 7 4 25 25 H 1.09001 * 109.47527 * 300.00239 * 1 2 3 26 26 H 1.08997 * 109.47224 * 60.00568 * 1 2 3 27 27 H 1.09004 * 109.46637 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47541 * 240.00275 * 2 1 3 29 29 H 1.09001 * 109.47213 * 59.99569 * 3 2 1 30 30 H 1.08992 * 109.47099 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47091 * 299.99917 * 3 2 1 32 32 H 1.08996 * 109.47598 * 293.94676 * 6 4 2 33 33 H 1.09003 * 109.47341 * 173.93738 * 6 4 2 34 34 H 1.09006 * 109.46943 * 53.94634 * 6 4 2 35 35 H 1.08997 * 109.58364 * 246.20143 * 10 9 7 36 36 H 1.08997 * 109.58326 * 6.62708 * 10 9 7 37 37 H 1.08995 * 109.63756 * 294.86366 * 11 10 9 38 38 H 1.09000 * 109.42792 * 174.72521 * 11 10 9 39 39 H 1.08997 * 109.45604 * 58.53215 * 12 11 10 40 40 H 1.09004 * 109.47175 * 93.92783 * 14 13 12 41 41 H 1.08998 * 109.46938 * 213.92574 * 14 13 12 42 42 H 1.08993 * 109.47426 * 333.92816 * 14 13 12 43 43 H 0.97006 * 120.00399 * 180.02562 * 18 17 15 44 44 H 1.09003 * 109.49928 * 301.41161 * 23 12 11 45 45 H 1.09001 * 109.52064 * 181.33418 * 23 12 11 46 46 H 1.09004 * 109.59047 * 353.37887 * 24 9 7 47 47 H 1.09004 * 109.58674 * 113.65442 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6766 -0.2073 2.1392 6 6 1.5300 -2.1636 1.2494 7 6 3.5470 -0.7206 1.2496 8 8 4.1536 -0.7393 0.1996 9 7 4.2206 -0.6994 2.4168 10 6 3.5038 -0.7850 3.6965 11 6 4.1041 -1.9371 4.5165 12 6 5.6134 -1.7247 4.6549 13 7 6.1852 -2.8019 5.4667 14 6 6.0632 -4.1941 5.0271 15 6 6.8335 -2.5075 6.6363 16 1 6.6236 -1.5820 7.1520 17 6 7.7608 -3.3984 7.1592 18 7 8.1904 -4.4053 6.4285 19 14 8.3986 -3.1684 8.8998 20 1 7.7642 -1.9700 9.5051 21 1 8.0672 -4.3674 9.7109 22 1 9.8718 -2.9848 8.8669 23 6 6.2607 -1.7328 3.2681 24 6 5.6852 -0.5841 2.4338 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 0.4455 -2.1656 1.3577 33 1 1.9793 -2.7078 2.0801 34 1 1.8022 -2.6453 0.3101 35 1 3.6159 0.1523 4.2414 36 1 2.4472 -0.9783 3.5112 37 1 3.9148 -2.8840 4.0110 38 1 3.6470 -1.9545 5.5058 39 1 5.8024 -0.7663 5.1383 40 1 6.9527 -4.4765 4.4638 41 1 5.9633 -4.8424 5.8976 42 1 5.1830 -4.2991 4.3929 43 1 8.8382 -5.0282 6.7940 44 1 6.0511 -2.6817 2.7743 45 1 7.3385 -1.6052 3.3685 46 1 6.0685 -0.6447 1.4151 47 1 5.9716 0.3704 2.8756 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985684321.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:21 Heat of formation + Delta-G solvation = -30.957096 kcal Electronic energy + Delta-G solvation = -23753.431206 eV Core-core repulsion = 20550.254690 eV Total energy + Delta-G solvation = -3203.176516 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.36010 -37.81975 -36.14770 -35.03049 -32.28182 -31.31816 -30.30139 -29.60788 -27.45374 -26.00215 -25.21540 -24.06638 -22.83702 -22.13391 -20.69170 -19.33332 -18.27028 -17.22032 -16.73804 -15.93242 -15.18799 -15.01447 -14.68785 -14.26598 -13.96710 -13.79785 -13.66301 -13.48563 -13.18445 -12.69624 -12.53629 -12.35786 -12.30100 -12.26169 -12.10716 -11.68187 -11.59911 -11.45284 -11.11199 -10.92643 -10.85605 -10.83205 -10.79454 -10.62441 -10.37844 -10.20478 -10.09748 -9.84700 -9.61747 -9.40348 -8.56079 -8.39149 -6.74416 -5.71694 -3.18004 2.78026 3.17421 3.36978 3.44154 3.46012 4.45514 4.48426 4.54246 4.75055 4.97661 5.07685 5.22506 5.24436 5.29994 5.37810 5.39500 5.44501 5.48201 5.51529 5.64486 5.65813 5.68846 5.70832 5.77583 5.80984 5.90970 5.95040 6.02697 6.09915 6.18056 6.19937 6.24412 6.29418 6.40733 6.55786 6.66325 6.81334 6.99918 7.03302 7.40431 7.61260 7.74697 7.81349 8.35063 8.40678 9.24523 9.88146 10.37703 11.33048 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.037114 B = 0.003649 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.241398 B = 7672.418390 C = 7756.114298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.080 4.080 3 C -0.150 4.150 4 C -0.108 4.108 5 H 0.090 0.910 6 C -0.143 4.143 7 C 0.521 3.479 8 O -0.549 6.549 9 N -0.606 5.606 10 C 0.107 3.893 11 C -0.146 4.146 12 C 0.180 3.820 13 N -0.597 5.597 14 C 0.165 3.835 15 C -0.254 4.254 16 H 0.068 0.932 17 C 0.001 3.999 18 N -0.907 5.907 19 Si 0.904 3.096 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.291 1.291 23 C -0.143 4.143 24 C 0.113 3.887 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.081 0.919 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.026 0.974 41 H 0.042 0.958 42 H -0.003 1.003 43 H 0.251 0.749 44 H 0.058 0.942 45 H 0.074 0.926 46 H 0.084 0.916 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.947 8.386 -9.475 19.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.098 4.098 3 C -0.207 4.207 4 C -0.129 4.129 5 H 0.108 0.892 6 C -0.201 4.201 7 C 0.309 3.691 8 O -0.427 6.427 9 N -0.339 5.339 10 C -0.016 4.016 11 C -0.187 4.187 12 C 0.071 3.929 13 N -0.318 5.318 14 C 0.021 3.979 15 C -0.384 4.384 16 H 0.086 0.914 17 C -0.197 4.197 18 N -0.552 5.552 19 Si 0.734 3.266 20 H -0.204 1.204 21 H -0.217 1.217 22 H -0.218 1.218 23 C -0.184 4.184 24 C -0.010 4.010 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.099 0.901 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.045 0.955 41 H 0.060 0.940 42 H 0.015 0.985 43 H 0.062 0.938 44 H 0.077 0.923 45 H 0.092 0.908 46 H 0.102 0.898 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.480 8.223 -9.948 19.397 hybrid contribution 0.542 -0.058 1.098 1.226 sum -13.938 8.165 -8.849 18.419 Atomic orbital electron populations 1.21894 0.94904 1.01927 1.01752 1.20971 0.95286 0.96222 0.97357 1.21877 1.01922 0.95583 1.01343 1.21428 0.92178 0.98790 1.00496 0.89153 1.21785 1.01383 0.93913 1.03008 1.20568 0.89833 0.75443 0.83279 1.90647 1.70317 1.50564 1.31157 1.48205 1.07691 1.72090 1.05950 1.21943 0.96018 0.99686 0.83962 1.22548 0.99345 0.97316 0.99454 1.20276 0.89835 0.92816 0.89970 1.43965 1.64336 1.00739 1.22763 1.20724 0.95102 0.84887 0.97229 1.19268 1.16192 1.05315 0.97599 0.91403 1.25030 0.97256 0.98772 0.98653 1.70082 1.33018 1.17131 1.34999 0.86197 0.78396 0.77426 0.84590 1.20357 1.21689 1.21782 1.22481 1.01058 0.97365 0.97466 1.21677 0.78702 0.98921 1.01697 0.92698 0.92577 0.92285 0.90098 0.93027 0.92090 0.92672 0.91315 0.91941 0.91872 0.91510 0.90219 0.91943 0.90848 0.91987 0.95525 0.93958 0.98504 0.93848 0.92299 0.90754 0.89770 0.91909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 8.84 37.16 0.33 -0.81 16 2 C -0.08 -0.81 2.17 -90.62 -0.20 -1.00 16 3 C -0.15 -1.53 8.92 37.16 0.33 -1.20 16 4 C -0.11 -1.17 1.48 -91.78 -0.14 -1.30 16 5 H 0.09 0.85 6.38 -51.93 -0.33 0.51 16 6 C -0.14 -1.42 8.44 37.16 0.31 -1.11 16 7 C 0.52 7.56 5.79 -10.99 -0.06 7.49 16 8 O -0.55 -9.78 14.85 5.56 0.08 -9.69 16 9 N -0.61 -8.73 2.97 -172.50 -0.51 -9.24 16 10 C 0.11 1.35 6.18 -3.49 -0.02 1.33 16 11 C -0.15 -2.33 5.34 -26.38 -0.14 -2.47 16 12 C 0.18 3.50 2.55 -67.89 -0.17 3.32 16 13 N -0.60 -14.55 2.81 -173.44 -0.49 -15.04 16 14 C 0.17 4.05 8.03 59.85 0.48 4.53 16 15 C -0.25 -6.85 9.59 -15.06 -0.14 -6.99 16 16 H 0.07 1.78 7.82 -52.48 -0.41 1.37 16 17 C 0.00 0.03 5.12 -17.43 -0.09 -0.06 16 18 N -0.91 -26.38 10.64 55.49 0.59 -25.79 16 19 Si 0.90 21.66 29.57 -169.99 -5.03 16.64 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 C -0.14 -2.64 5.34 -26.61 -0.14 -2.78 16 24 C 0.11 1.76 6.44 -3.71 -0.02 1.74 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.42 6.57 -51.93 -0.34 0.08 16 28 H 0.08 0.95 7.85 -51.93 -0.41 0.54 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.76 6.68 -51.93 -0.35 0.42 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.53 6.77 -51.93 -0.35 0.18 16 33 H 0.06 0.66 7.87 -51.93 -0.41 0.26 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.82 5.25 -51.93 -0.27 0.55 16 37 H 0.06 1.05 6.72 -51.93 -0.35 0.70 16 38 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.06 1.22 7.86 -51.93 -0.41 0.81 16 40 H 0.03 0.71 7.42 -51.93 -0.39 0.33 16 41 H 0.04 1.12 7.21 -51.93 -0.37 0.74 16 42 H 0.00 -0.08 6.46 -51.93 -0.34 -0.41 16 43 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 44 H 0.06 1.17 7.72 -51.93 -0.40 0.76 16 45 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 46 H 0.08 1.39 7.00 -51.93 -0.36 1.03 16 47 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 353.56 15.07 5.33 5.33 Total: -1.00 -30.71 353.56 -8.13 -38.84 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -8.43 Total: -1.74 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: 0.32 Total: 0.69 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: -0.41 Total: -50.07 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.08 Total: -9.69 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.71 -8.13 -38.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985684321.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.884 kcal (2) G-P(sol) polarization free energy of solvation -30.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds