Wall clock time and date at job start Tue Mar 31 2020 05:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46924 * 2 1 4 4 C 1.53000 * 109.47163 * 119.99577 * 2 1 3 5 5 H 1.09001 * 109.47049 * 300.00477 * 4 2 1 6 6 C 1.52996 * 109.47042 * 60.00044 * 4 2 1 7 7 C 1.50696 * 109.47193 * 180.02562 * 4 2 1 8 8 O 1.21278 * 120.00089 * 328.96613 * 7 4 2 9 9 N 1.34778 * 119.99979 * 148.96538 * 7 4 2 10 10 C 1.46926 * 120.63160 * 4.91742 * 9 7 4 11 11 C 1.53625 * 108.54069 * 126.36712 * 10 9 7 12 12 C 1.53043 * 109.24379 * 54.85677 * 11 10 9 13 13 N 1.46500 * 109.44766 * 178.49122 * 12 11 10 14 14 C 1.46502 * 119.99684 * 60.06420 * 13 12 11 15 15 C 1.36932 * 120.00419 * 240.06097 * 13 12 11 16 16 H 1.08004 * 119.99663 * 22.81092 * 15 13 12 17 17 C 1.38810 * 120.00398 * 202.81774 * 15 13 12 18 18 N 1.31617 * 119.99890 * 11.82991 * 17 15 13 19 19 Si 1.86799 * 120.00134 * 191.83931 * 17 15 13 20 20 H 1.48498 * 109.47255 * 359.97438 * 19 17 15 21 21 H 1.48507 * 109.47146 * 119.99735 * 19 17 15 22 22 H 1.48499 * 109.47189 * 239.99294 * 19 17 15 23 23 C 1.53037 * 109.53725 * 298.50837 * 12 11 10 24 24 C 1.46927 * 120.62980 * 185.19206 * 9 7 4 25 25 H 1.09001 * 109.47527 * 300.00239 * 1 2 3 26 26 H 1.08997 * 109.47224 * 60.00568 * 1 2 3 27 27 H 1.09004 * 109.46637 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47541 * 240.00275 * 2 1 3 29 29 H 1.09001 * 109.47213 * 59.99569 * 3 2 1 30 30 H 1.08992 * 109.47099 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47091 * 299.99917 * 3 2 1 32 32 H 1.08996 * 109.47598 * 293.94676 * 6 4 2 33 33 H 1.09003 * 109.47341 * 173.93738 * 6 4 2 34 34 H 1.09006 * 109.46943 * 53.94634 * 6 4 2 35 35 H 1.08997 * 109.58364 * 246.20143 * 10 9 7 36 36 H 1.08997 * 109.58326 * 6.62708 * 10 9 7 37 37 H 1.08995 * 109.63756 * 294.86366 * 11 10 9 38 38 H 1.09000 * 109.42792 * 174.72521 * 11 10 9 39 39 H 1.08997 * 109.45604 * 58.53215 * 12 11 10 40 40 H 1.09004 * 109.47175 * 93.92783 * 14 13 12 41 41 H 1.08998 * 109.46938 * 213.92574 * 14 13 12 42 42 H 1.08993 * 109.47426 * 333.92816 * 14 13 12 43 43 H 0.97006 * 120.00399 * 180.02562 * 18 17 15 44 44 H 1.09003 * 109.49928 * 301.41161 * 23 12 11 45 45 H 1.09001 * 109.52064 * 181.33418 * 23 12 11 46 46 H 1.09004 * 109.59047 * 353.37887 * 24 9 7 47 47 H 1.09004 * 109.58674 * 113.65442 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6766 -0.2073 2.1392 6 6 1.5300 -2.1636 1.2494 7 6 3.5470 -0.7206 1.2496 8 8 4.1536 -0.7393 0.1996 9 7 4.2206 -0.6994 2.4168 10 6 3.5038 -0.7850 3.6965 11 6 4.1041 -1.9371 4.5165 12 6 5.6134 -1.7247 4.6549 13 7 6.1852 -2.8019 5.4667 14 6 6.0632 -4.1941 5.0271 15 6 6.8335 -2.5075 6.6363 16 1 6.6236 -1.5820 7.1520 17 6 7.7608 -3.3984 7.1592 18 7 8.1904 -4.4053 6.4285 19 14 8.3986 -3.1684 8.8998 20 1 7.7642 -1.9700 9.5051 21 1 8.0672 -4.3674 9.7109 22 1 9.8718 -2.9848 8.8669 23 6 6.2607 -1.7328 3.2681 24 6 5.6852 -0.5841 2.4338 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 0.4455 -2.1656 1.3577 33 1 1.9793 -2.7078 2.0801 34 1 1.8022 -2.6453 0.3101 35 1 3.6159 0.1523 4.2414 36 1 2.4472 -0.9783 3.5112 37 1 3.9148 -2.8840 4.0110 38 1 3.6470 -1.9545 5.5058 39 1 5.8024 -0.7663 5.1383 40 1 6.9527 -4.4765 4.4638 41 1 5.9633 -4.8424 5.8976 42 1 5.1830 -4.2991 4.3929 43 1 8.8382 -5.0282 6.7940 44 1 6.0511 -2.6817 2.7743 45 1 7.3385 -1.6052 3.3685 46 1 6.0685 -0.6447 1.4151 47 1 5.9716 0.3704 2.8756 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985684321.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:20 Heat of formation + Delta-G solvation = -48.247864 kcal Electronic energy + Delta-G solvation = -23754.180990 eV Core-core repulsion = 20550.254690 eV Total energy + Delta-G solvation = -3203.926299 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.50138 -39.19546 -37.16819 -36.63855 -33.96443 -32.52070 -31.52367 -31.12279 -28.17025 -28.03910 -26.56646 -25.19045 -24.10690 -23.67702 -21.83003 -20.60227 -19.45035 -18.75465 -18.32880 -17.12149 -16.87409 -16.31175 -15.73783 -15.55619 -15.23165 -15.07770 -15.01556 -14.80198 -14.58936 -14.11542 -13.82937 -13.49034 -13.39110 -13.15202 -13.04719 -13.02223 -12.88401 -12.79256 -12.65333 -12.39733 -12.36101 -12.19536 -12.03471 -11.89547 -11.81896 -11.64973 -11.56532 -11.38606 -11.21933 -10.65714 -10.53494 -9.62785 -8.76319 -7.80870 -5.29302 1.46859 1.48063 1.58340 1.65959 2.05200 2.51617 3.32809 3.48669 3.62950 3.74452 3.88713 3.97788 4.11677 4.16838 4.24169 4.34215 4.38810 4.44896 4.56010 4.56896 4.64163 4.72499 4.79380 4.82316 4.84213 4.89876 4.92062 4.94060 5.01088 5.05216 5.06784 5.13206 5.21414 5.25310 5.31866 5.38032 5.46304 5.52605 5.54106 5.61928 5.67953 5.71772 6.34646 6.48801 7.16646 7.21779 7.89548 8.34470 9.22663 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.037114 B = 0.003649 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.241398 B = 7672.418390 C = 7756.114298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.079 4.079 3 C -0.148 4.148 4 C -0.102 4.102 5 H 0.117 0.883 6 C -0.141 4.141 7 C 0.515 3.485 8 O -0.588 6.588 9 N -0.609 5.609 10 C 0.113 3.887 11 C -0.135 4.135 12 C 0.173 3.827 13 N -0.611 5.611 14 C 0.185 3.815 15 C -0.258 4.258 16 H 0.076 0.924 17 C -0.057 4.057 18 N -0.942 5.942 19 Si 0.969 3.031 20 H -0.262 1.262 21 H -0.293 1.293 22 H -0.296 1.296 23 C -0.131 4.131 24 C 0.122 3.878 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.031 0.969 31 H 0.063 0.937 32 H 0.098 0.902 33 H 0.056 0.944 34 H 0.047 0.953 35 H 0.088 0.912 36 H 0.114 0.886 37 H 0.051 0.949 38 H 0.078 0.922 39 H 0.064 0.936 40 H -0.006 1.006 41 H 0.015 0.985 42 H 0.024 0.976 43 H 0.246 0.754 44 H 0.038 0.962 45 H 0.049 0.951 46 H 0.071 0.929 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.846 10.193 -8.728 22.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.098 4.098 3 C -0.205 4.205 4 C -0.123 4.123 5 H 0.135 0.865 6 C -0.199 4.199 7 C 0.306 3.694 8 O -0.469 6.469 9 N -0.341 5.341 10 C -0.009 4.009 11 C -0.175 4.175 12 C 0.067 3.933 13 N -0.334 5.334 14 C 0.040 3.960 15 C -0.388 4.388 16 H 0.094 0.906 17 C -0.252 4.252 18 N -0.590 5.590 19 Si 0.797 3.203 20 H -0.186 1.186 21 H -0.220 1.220 22 H -0.223 1.223 23 C -0.171 4.171 24 C -0.001 4.001 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.050 0.950 31 H 0.082 0.918 32 H 0.116 0.884 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.106 0.894 36 H 0.132 0.868 37 H 0.070 0.930 38 H 0.097 0.903 39 H 0.082 0.918 40 H 0.012 0.988 41 H 0.034 0.966 42 H 0.043 0.957 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.068 0.932 46 H 0.090 0.910 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -17.421 10.066 -9.201 22.124 hybrid contribution 1.449 -0.591 0.794 1.755 sum -15.973 9.475 -8.406 20.386 Atomic orbital electron populations 1.21856 0.92473 1.02782 1.02795 1.20963 0.97171 0.95648 0.96014 1.21858 0.99980 0.96070 1.02614 1.21514 0.88971 0.99839 1.01975 0.86545 1.21805 1.03183 0.92890 1.02006 1.21337 0.91477 0.74141 0.82472 1.90632 1.71469 1.52189 1.32613 1.48308 1.06997 1.71900 1.06922 1.22065 0.97184 0.99123 0.82551 1.22363 0.96306 0.98393 1.00417 1.20532 0.92084 0.91355 0.89375 1.44211 1.64449 1.01632 1.23071 1.20373 0.94747 0.85005 0.95892 1.19658 1.15536 1.05184 0.98469 0.90642 1.25817 0.98094 0.98928 1.02335 1.70262 1.33944 1.18177 1.36581 0.85173 0.77284 0.77591 0.80222 1.18634 1.22039 1.22342 1.22271 0.99723 0.97669 0.97449 1.21450 0.79989 0.98267 1.00396 0.91216 0.92031 0.91532 0.92517 0.91387 0.95024 0.91821 0.88364 0.92530 0.93348 0.89360 0.86846 0.92995 0.90295 0.91801 0.98812 0.96597 0.95729 0.94513 0.94301 0.93197 0.91006 0.90108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 8.84 71.98 0.64 -1.03 16 2 C -0.08 -1.42 2.17 -10.79 -0.02 -1.45 16 3 C -0.15 -2.73 8.92 71.98 0.64 -2.09 16 4 C -0.10 -1.91 1.48 -11.54 -0.02 -1.93 16 5 H 0.12 1.59 6.38 -2.39 -0.02 1.57 16 6 C -0.14 -2.40 8.44 71.98 0.61 -1.79 16 7 C 0.52 14.23 5.79 87.66 0.51 14.74 16 8 O -0.59 -21.09 14.85 -3.02 -0.04 -21.13 16 9 N -0.61 -16.35 2.97 -818.07 -2.43 -18.78 16 10 C 0.11 2.43 6.18 86.51 0.53 2.96 16 11 C -0.13 -3.98 5.34 30.82 0.16 -3.82 16 12 C 0.17 6.61 2.55 45.02 0.11 6.73 16 13 N -0.61 -30.01 2.81 -702.64 -1.97 -31.99 16 14 C 0.18 9.30 8.03 127.77 1.03 10.33 16 15 C -0.26 -13.91 9.59 84.03 0.81 -13.11 16 16 H 0.08 3.88 7.82 -2.91 -0.02 3.86 16 17 C -0.06 -3.20 5.12 84.86 0.43 -2.76 16 18 N -0.94 -56.47 10.64 21.65 0.23 -56.24 16 19 Si 0.97 44.86 29.57 68.60 2.03 46.89 16 20 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 21 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 22 H -0.30 -13.86 7.11 99.48 0.71 -13.16 16 23 C -0.13 -4.88 5.34 30.67 0.16 -4.72 16 24 C 0.12 3.76 6.44 86.36 0.56 4.32 16 25 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.07 0.69 6.57 -2.39 -0.02 0.68 16 28 H 0.06 1.30 7.85 -2.39 -0.02 1.28 16 29 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 30 H 0.03 0.76 6.68 -2.39 -0.02 0.75 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.10 1.11 6.77 -2.39 -0.02 1.09 16 33 H 0.06 1.04 7.87 -2.39 -0.02 1.02 16 34 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 35 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.11 1.75 5.25 -2.39 -0.01 1.73 16 37 H 0.05 1.65 6.72 -2.39 -0.02 1.63 16 38 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.06 2.41 7.86 -2.39 -0.02 2.39 16 40 H -0.01 -0.36 7.42 -2.38 -0.02 -0.38 16 41 H 0.02 0.84 7.21 -2.39 -0.02 0.83 16 42 H 0.02 1.07 6.46 -2.39 -0.02 1.05 16 43 H 0.25 14.35 8.31 -92.70 -0.77 13.57 16 44 H 0.04 1.58 7.72 -2.39 -0.02 1.56 16 45 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 46 H 0.07 2.41 7.00 -2.39 -0.02 2.39 16 47 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 Total: -1.00 -69.06 353.56 4.89 -64.18 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 0.92 Total: 10.67 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: 6.15 Total: 6.39 kcal Atomic # 7 Polarization: -102.83 SS G_CDS: -4.17 Total: -107.00 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -0.04 Total: -21.13 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -69.06 4.89 -64.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985684321.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.928 kcal (2) G-P(sol) polarization free energy of solvation -69.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds