Wall clock time and date at job start Tue Mar 31 2020 05:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47325 * 2 1 4 4 C 1.52999 * 109.47275 * 120.00054 * 2 1 3 5 5 H 1.09004 * 109.47144 * 299.99849 * 4 2 1 6 6 C 1.53004 * 109.46988 * 59.99739 * 4 2 1 7 7 C 1.50702 * 109.47117 * 179.97438 * 4 2 1 8 8 O 1.21282 * 119.99870 * 323.52435 * 7 4 2 9 9 N 1.34770 * 119.99736 * 143.25478 * 7 4 2 10 10 C 1.47023 * 125.65239 * 355.10357 * 9 7 4 11 11 C 1.54324 * 107.27279 * 181.02683 * 10 9 7 12 12 H 1.09003 * 110.71303 * 263.82639 * 11 10 9 13 13 N 1.46503 * 110.72252 * 140.55743 * 11 10 9 14 14 C 1.36936 * 119.99940 * 86.44753 * 13 11 10 15 15 H 1.07993 * 120.00213 * 0.02562 * 14 13 11 16 16 C 1.38813 * 119.99439 * 180.02562 * 14 13 11 17 17 N 1.31622 * 119.99825 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 120.00470 * 359.97438 * 16 14 13 19 19 H 1.48507 * 109.46758 * 90.00054 * 18 16 14 20 20 H 1.48492 * 109.47069 * 210.00045 * 18 16 14 21 21 H 1.48503 * 109.47023 * 330.00364 * 18 16 14 22 22 C 1.55157 * 102.94626 * 22.18872 * 11 10 9 23 23 C 1.52999 * 111.00190 * 82.57110 * 22 11 10 24 24 C 1.52993 * 111.00435 * 206.38980 * 22 11 10 25 25 C 1.47431 * 125.64698 * 174.79822 * 9 7 4 26 26 H 1.09003 * 109.47380 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47215 * 300.00407 * 1 2 3 28 28 H 1.09000 * 109.47373 * 59.99931 * 1 2 3 29 29 H 1.09004 * 109.46911 * 240.00046 * 2 1 3 30 30 H 1.08999 * 109.47125 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46765 * 299.99594 * 3 2 1 32 32 H 1.08995 * 109.47045 * 59.99564 * 3 2 1 33 33 H 1.08998 * 109.47248 * 294.54733 * 6 4 2 34 34 H 1.08999 * 109.46985 * 54.55002 * 6 4 2 35 35 H 1.08998 * 109.46653 * 174.54943 * 6 4 2 36 36 H 1.09006 * 109.88038 * 300.44205 * 10 9 7 37 37 H 1.09001 * 109.88323 * 61.44820 * 10 9 7 38 38 H 0.96995 * 119.99549 * 266.45088 * 13 11 10 39 39 H 0.97001 * 120.00228 * 180.02562 * 17 16 14 40 40 H 1.08998 * 109.46959 * 60.00461 * 23 22 11 41 41 H 1.09000 * 109.46730 * 180.02562 * 23 22 11 42 42 H 1.08993 * 109.47668 * 300.00629 * 23 22 11 43 43 H 1.09002 * 109.47665 * 60.00423 * 24 22 11 44 44 H 1.09008 * 109.46943 * 180.02562 * 24 22 11 45 45 H 1.08993 * 109.47180 * 299.99640 * 24 22 11 46 46 H 1.09004 * 110.36316 * 274.74241 * 25 9 7 47 47 H 1.08991 * 110.36819 * 37.06256 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2074 2.1392 6 6 1.5299 -2.1638 1.2492 7 6 3.5470 -0.7218 1.2489 8 8 4.1531 -0.8406 0.2051 9 7 4.2211 -0.5848 2.4078 10 6 3.6191 -0.3260 3.7239 11 6 4.7732 -0.2210 4.7430 12 1 4.9303 -1.1746 5.2472 13 7 4.5114 0.8437 5.7147 14 6 3.7751 0.5791 6.8386 15 1 3.3877 -0.4145 7.0088 16 6 3.5268 1.5881 7.7589 17 7 2.8195 1.3338 8.8394 18 14 4.1974 3.3066 7.4648 19 1 3.2039 4.1013 6.6988 20 1 4.4588 3.9659 8.7694 21 1 5.4627 3.2186 6.6923 22 6 5.9922 0.1363 3.8522 23 6 6.0369 1.6375 3.5604 24 6 7.2982 -0.3335 4.4958 25 6 5.6840 -0.6758 2.5668 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8932 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6766 1.9563 0.8899 33 1 0.4443 -2.1653 1.3469 34 1 1.8113 -2.6486 0.3144 35 1 1.9708 -2.7049 2.0863 36 1 3.0606 0.6098 3.6986 37 1 2.9550 -1.1466 3.9956 38 1 4.8597 1.7360 5.5619 39 1 2.6456 2.0389 9.4824 40 1 6.1161 2.1876 4.4980 41 1 6.9006 1.8603 2.9339 42 1 5.1256 1.9341 3.0411 43 1 7.2688 -1.4148 4.6302 44 1 8.1365 -0.0700 3.8507 45 1 7.4202 0.1499 5.4649 46 1 5.9882 -1.7152 2.6900 47 1 6.1873 -0.2316 1.7081 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996367770.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:41 Heat of formation + Delta-G solvation = -40.468225 kcal Electronic energy + Delta-G solvation = -24066.822910 eV Core-core repulsion = 20863.233961 eV Total energy + Delta-G solvation = -3203.588949 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.33787 -38.49026 -36.02387 -34.25220 -33.23037 -31.17531 -30.79860 -27.97463 -27.53759 -27.17672 -26.35137 -24.10286 -23.64103 -21.42958 -20.42909 -19.10573 -18.41215 -17.66825 -16.96164 -16.06247 -15.28586 -14.82269 -14.56063 -14.47377 -14.18775 -13.81623 -13.59787 -13.38999 -13.01370 -12.71547 -12.65732 -12.52859 -12.30799 -12.17372 -12.06652 -12.05681 -11.69902 -11.56017 -11.42591 -11.34900 -11.04223 -11.02825 -10.73230 -10.68962 -10.60070 -10.47536 -10.33671 -9.99994 -9.63958 -9.49028 -9.04124 -8.34039 -7.42270 -5.87703 -3.25095 2.83709 3.21112 3.28649 3.31524 3.38452 4.48695 4.51072 4.63112 4.83219 4.85776 4.96229 4.99559 5.17952 5.32902 5.38516 5.40062 5.42340 5.49351 5.60498 5.61120 5.63778 5.70545 5.74569 5.81031 5.82759 5.83629 5.87784 5.88137 5.97265 6.02079 6.11196 6.13402 6.16785 6.23215 6.28863 6.33398 6.35910 6.45982 6.50687 6.57971 6.73677 7.78434 7.88083 8.31328 8.38812 9.08409 9.80561 9.99229 11.30071 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016046 B = 0.005513 C = 0.004806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.520039 B = 5077.282304 C = 5824.972039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.079 4.079 3 C -0.150 4.150 4 C -0.106 4.106 5 H 0.092 0.908 6 C -0.138 4.138 7 C 0.535 3.465 8 O -0.554 6.554 9 N -0.613 5.613 10 C 0.075 3.925 11 C 0.187 3.813 12 H 0.074 0.926 13 N -0.736 5.736 14 C -0.251 4.251 15 H 0.092 0.908 16 C 0.011 3.989 17 N -0.929 5.929 18 Si 0.878 3.122 19 H -0.283 1.283 20 H -0.289 1.289 21 H -0.276 1.276 22 C -0.089 4.089 23 C -0.135 4.135 24 C -0.130 4.130 25 C 0.117 3.883 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.366 0.634 39 H 0.261 0.739 40 H 0.063 0.937 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.051 0.949 45 H 0.066 0.934 46 H 0.066 0.934 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.910 -3.296 -15.007 15.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.098 4.098 3 C -0.208 4.208 4 C -0.127 4.127 5 H 0.110 0.890 6 C -0.196 4.196 7 C 0.324 3.676 8 O -0.433 6.433 9 N -0.346 5.346 10 C -0.050 4.050 11 C 0.075 3.925 12 H 0.092 0.908 13 N -0.380 5.380 14 C -0.381 4.381 15 H 0.110 0.890 16 C -0.185 4.185 17 N -0.576 5.576 18 Si 0.708 3.292 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.203 1.203 22 C -0.091 4.091 23 C -0.192 4.192 24 C -0.188 4.188 25 C -0.006 4.006 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.098 0.902 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.202 0.798 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.085 0.915 46 H 0.084 0.916 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.045 -3.451 -15.388 15.805 hybrid contribution 0.296 1.324 0.088 1.360 sum 1.340 -2.126 -15.300 15.505 Atomic orbital electron populations 1.21896 0.94806 1.01917 1.01912 1.20972 0.95473 0.96157 0.97149 1.21877 1.01586 0.95708 1.01608 1.21379 0.91683 0.98814 1.00806 0.89024 1.21717 1.01518 0.93892 1.02473 1.20288 0.89682 0.75525 0.82073 1.90641 1.70528 1.51157 1.30974 1.48561 1.07774 1.70257 1.08000 1.23215 0.98926 1.01067 0.81828 1.21171 0.89586 0.93511 0.88246 0.90820 1.42857 1.64171 1.08202 1.22757 1.19072 1.25019 0.97861 0.96140 0.89005 1.24651 0.99768 0.97521 0.96607 1.69691 1.43295 1.32734 1.11846 0.86667 0.78954 0.86242 0.77300 1.20953 1.21558 1.20252 1.22044 0.96710 0.95686 0.94653 1.21685 1.01473 0.94533 1.01553 1.21657 0.95046 1.01102 1.00964 1.22310 0.81025 0.99525 0.97704 0.92309 0.92458 0.92603 0.90240 0.92419 0.92648 0.92688 0.91223 0.92058 0.92249 0.90961 0.91876 0.79777 0.92913 0.91797 0.92848 0.92546 0.92473 0.92986 0.91484 0.91608 0.90850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.84 37.15 0.33 -1.10 16 2 C -0.08 -0.93 2.20 -90.62 -0.20 -1.13 16 3 C -0.15 -1.85 8.94 37.16 0.33 -1.51 16 4 C -0.11 -1.36 2.05 -91.77 -0.19 -1.55 16 5 H 0.09 1.19 6.89 -51.93 -0.36 0.84 16 6 C -0.14 -1.55 8.66 37.16 0.32 -1.22 16 7 C 0.54 8.35 5.75 -10.99 -0.06 8.29 16 8 O -0.55 -10.09 16.06 5.56 0.09 -10.00 16 9 N -0.61 -9.39 3.31 -170.37 -0.56 -9.96 16 10 C 0.08 1.23 5.40 -3.06 -0.02 1.21 16 11 C 0.19 3.27 2.84 -66.09 -0.19 3.08 16 12 H 0.07 1.33 8.02 -51.93 -0.42 0.91 16 13 N -0.74 -15.88 4.88 -51.65 -0.25 -16.13 16 14 C -0.25 -6.56 10.46 -15.06 -0.16 -6.72 16 15 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 16 C 0.01 0.31 5.50 -17.43 -0.10 0.21 16 17 N -0.93 -27.89 13.97 55.49 0.78 -27.12 16 18 Si 0.88 21.06 27.74 -169.99 -4.71 16.34 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.28 -6.19 6.52 56.52 0.37 -5.82 16 22 C -0.09 -1.32 0.87 -152.24 -0.13 -1.46 16 23 C -0.14 -2.02 7.94 37.16 0.30 -1.73 16 24 C -0.13 -1.72 8.68 37.15 0.32 -1.40 16 25 C 0.12 1.69 5.87 -2.40 -0.01 1.68 16 26 H 0.06 0.51 6.55 -51.93 -0.34 0.17 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.08 1.02 7.86 -51.93 -0.41 0.61 16 30 H 0.06 0.82 6.88 -51.93 -0.36 0.46 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.66 6.73 -51.93 -0.35 0.31 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 1.26 7.81 -51.93 -0.41 0.85 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.37 7.86 3.12 -40.82 -0.13 7.73 16 39 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.06 1.05 6.34 -51.93 -0.33 0.72 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.88 7.91 -51.93 -0.41 0.47 16 43 H 0.06 0.70 8.07 -51.93 -0.42 0.28 16 44 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 45 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.07 0.89 7.99 -51.93 -0.41 0.47 16 47 H 0.07 1.08 7.91 -51.93 -0.41 0.67 16 LS Contribution 360.58 15.07 5.43 5.43 Total: -1.00 -29.91 360.58 -7.25 -37.17 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -8.57 Total: 7.61 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: 0.54 Total: -3.35 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: -0.04 Total: -53.21 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.09 Total: -10.00 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.71 Total: 16.34 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.91 -7.25 -37.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996367770.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.299 kcal (2) G-P(sol) polarization free energy of solvation -29.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds