Wall clock time and date at job start Tue Mar 31 2020 05:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47048 * 2 1 4 4 C 1.52991 * 109.47386 * 120.00360 * 2 1 3 5 5 H 1.08997 * 109.47216 * 299.99998 * 4 2 1 6 6 C 1.52998 * 109.47321 * 59.99807 * 4 2 1 7 7 C 1.50698 * 109.47284 * 179.97438 * 4 2 1 8 8 O 1.21282 * 120.00232 * 324.89707 * 7 4 2 9 9 N 1.34781 * 120.00108 * 144.89678 * 7 4 2 10 10 C 1.47021 * 125.64960 * 5.17247 * 9 7 4 11 11 C 1.54321 * 107.27369 * 181.02517 * 10 9 7 12 12 H 1.09002 * 110.71958 * 140.73317 * 11 10 9 13 13 N 1.46498 * 110.72215 * 263.83039 * 11 10 9 14 14 C 1.36930 * 120.00021 * 273.54984 * 13 11 10 15 15 H 1.07999 * 120.00425 * 359.97438 * 14 13 11 16 16 C 1.38818 * 119.99994 * 180.02562 * 14 13 11 17 17 N 1.31627 * 120.00024 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00112 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47325 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47357 * 119.99964 * 18 16 14 21 21 H 1.48508 * 109.46800 * 239.99461 * 18 16 14 22 22 C 1.55155 * 102.94122 * 22.19717 * 11 10 9 23 23 C 1.52996 * 111.00783 * 82.56915 * 22 11 10 24 24 C 1.53005 * 111.00555 * 206.38828 * 22 11 10 25 25 C 1.47422 * 125.64714 * 184.87229 * 9 7 4 26 26 H 1.09006 * 109.46974 * 299.99784 * 1 2 3 27 27 H 1.08997 * 109.47493 * 59.99521 * 1 2 3 28 28 H 1.08999 * 109.47510 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46974 * 240.00216 * 2 1 3 30 30 H 1.08999 * 109.47711 * 300.00167 * 3 2 1 31 31 H 1.08994 * 109.47282 * 60.00628 * 3 2 1 32 32 H 1.09005 * 109.46761 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47747 * 172.86476 * 6 4 2 34 34 H 1.09001 * 109.47401 * 292.86467 * 6 4 2 35 35 H 1.09001 * 109.47254 * 52.86293 * 6 4 2 36 36 H 1.08997 * 109.88207 * 300.44802 * 10 9 7 37 37 H 1.09000 * 109.87892 * 61.60921 * 10 9 7 38 38 H 0.97005 * 119.99736 * 93.53955 * 13 11 10 39 39 H 0.96995 * 120.00289 * 180.02562 * 17 16 14 40 40 H 1.09007 * 109.46566 * 60.00067 * 23 22 11 41 41 H 1.08996 * 109.47344 * 180.02562 * 23 22 11 42 42 H 1.08997 * 109.47403 * 300.00396 * 23 22 11 43 43 H 1.08993 * 109.47104 * 59.99318 * 24 22 11 44 44 H 1.08998 * 109.47124 * 179.97438 * 24 22 11 45 45 H 1.09002 * 109.46618 * 299.99669 * 24 22 11 46 46 H 1.09003 * 110.36524 * 274.74132 * 25 9 7 47 47 H 1.08997 * 110.37240 * 37.06628 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6767 -0.2075 2.1391 6 6 1.5300 -2.1638 1.2491 7 6 3.5470 -0.7218 1.2488 8 8 4.1532 -0.8155 0.2025 9 7 4.2212 -0.6181 2.4112 10 6 3.6196 -0.6061 3.7526 11 6 4.7695 -0.4453 4.7692 12 1 4.4750 0.2177 5.5828 13 7 5.1865 -1.7492 5.2907 14 6 4.5419 -2.2932 6.3694 15 1 3.7263 -1.7608 6.8361 16 6 4.9375 -3.5285 6.8639 17 7 5.9318 -4.1772 6.2955 18 14 4.0587 -4.2702 8.3359 19 1 2.9852 -3.3488 8.7875 20 1 3.4624 -5.5746 7.9509 21 1 5.0302 -4.4767 9.4400 22 6 5.8991 0.1924 3.9179 23 6 5.7116 1.7065 3.8036 24 6 7.2762 -0.1449 4.4931 25 6 5.6846 -0.5042 2.5484 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.9938 -2.7132 2.0683 34 1 0.4475 -2.1665 1.3768 35 1 1.7853 -2.6394 0.3021 36 1 2.9270 0.2309 3.8408 37 1 3.0949 -1.5446 3.9319 38 1 5.9192 -2.2273 4.8717 39 1 6.2080 -5.0405 6.6408 40 1 5.7305 2.1510 4.7987 41 1 6.5166 2.1279 3.2016 42 1 4.7538 1.9192 3.3288 43 1 7.4120 -1.2263 4.5003 44 1 8.0495 0.3140 3.8771 45 1 7.3480 0.2371 5.5115 46 1 6.1438 -1.4928 2.5470 47 1 6.0947 0.1067 1.7443 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996367774.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:48 Heat of formation + Delta-G solvation = -45.635662 kcal Electronic energy + Delta-G solvation = -24062.883036 eV Core-core repulsion = 20859.070010 eV Total energy + Delta-G solvation = -3203.813026 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.19796 -38.35120 -35.92866 -33.92699 -33.17615 -30.77911 -30.71776 -27.92647 -27.50710 -26.70555 -26.18783 -24.10243 -23.60994 -21.60635 -20.42266 -18.88348 -18.32610 -17.27308 -16.73335 -15.83017 -15.13975 -14.88601 -14.49771 -14.22499 -14.05782 -13.82918 -13.63253 -13.11692 -12.98353 -12.56356 -12.46835 -12.43184 -12.26186 -12.05479 -11.93578 -11.82063 -11.60308 -11.55668 -11.38655 -11.01268 -10.99666 -10.93524 -10.69359 -10.60147 -10.51215 -10.39923 -10.22279 -9.83307 -9.68030 -9.36045 -9.00100 -8.16647 -7.07324 -5.85400 -3.15297 2.98550 3.37824 3.39114 3.43766 3.46123 4.50540 4.63089 4.69126 4.89659 4.93122 5.10830 5.23456 5.24840 5.37363 5.44795 5.46500 5.55670 5.59044 5.62736 5.71183 5.75774 5.80089 5.81673 5.87745 5.91577 5.92714 5.96992 6.07256 6.12598 6.19565 6.21575 6.23104 6.28268 6.33580 6.37327 6.37853 6.42373 6.59130 6.71305 6.79302 6.91897 7.62641 7.97457 8.32412 8.54188 9.44487 9.99593 10.34387 11.36800 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016608 B = 0.005309 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.508536 B = 5272.334658 C = 6275.067456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.080 4.080 3 C -0.149 4.149 4 C -0.101 4.101 5 H 0.087 0.913 6 C -0.141 4.141 7 C 0.533 3.467 8 O -0.556 6.556 9 N -0.605 5.605 10 C 0.073 3.927 11 C 0.179 3.821 12 H 0.069 0.931 13 N -0.712 5.712 14 C -0.245 4.245 15 H 0.072 0.928 16 C -0.008 4.008 17 N -0.929 5.929 18 Si 0.906 3.094 19 H -0.280 1.280 20 H -0.292 1.292 21 H -0.291 1.291 22 C -0.089 4.089 23 C -0.129 4.129 24 C -0.125 4.125 25 C 0.121 3.879 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.080 0.920 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.053 0.947 37 H 0.076 0.924 38 H 0.387 0.613 39 H 0.256 0.744 40 H 0.058 0.942 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.069 0.931 44 H 0.044 0.956 45 H 0.060 0.940 46 H 0.067 0.933 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.754 10.964 -8.552 15.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.099 4.099 3 C -0.206 4.206 4 C -0.122 4.122 5 H 0.105 0.895 6 C -0.199 4.199 7 C 0.322 3.678 8 O -0.435 6.435 9 N -0.337 5.337 10 C -0.053 4.053 11 C 0.066 3.934 12 H 0.087 0.913 13 N -0.353 5.353 14 C -0.376 4.376 15 H 0.090 0.910 16 C -0.205 4.205 17 N -0.576 5.576 18 Si 0.737 3.263 19 H -0.205 1.205 20 H -0.219 1.219 21 H -0.218 1.218 22 C -0.090 4.090 23 C -0.186 4.186 24 C -0.183 4.183 25 C -0.002 4.002 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.223 0.777 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.088 0.912 44 H 0.063 0.937 45 H 0.079 0.921 46 H 0.086 0.914 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.569 10.839 -8.993 15.540 hybrid contribution -0.296 -0.747 0.791 1.128 sum -6.865 10.092 -8.202 14.705 Atomic orbital electron populations 1.21885 0.94928 1.01956 1.01653 1.20977 0.95320 0.96122 0.97435 1.21861 1.01721 0.95702 1.01300 1.21323 0.91907 0.98756 1.00259 0.89459 1.21740 1.01246 0.93998 1.02910 1.20231 0.89573 0.75743 0.82271 1.90640 1.70498 1.51142 1.31218 1.48461 1.07776 1.71306 1.06181 1.23256 0.98716 1.01102 0.82264 1.21221 0.90320 0.89238 0.92584 0.91309 1.42465 1.40440 1.17161 1.35274 1.19257 1.12292 1.00634 1.05417 0.90992 1.24741 0.98585 0.97562 0.99577 1.69667 1.29638 1.15615 1.42716 0.86146 0.78745 0.79015 0.82408 1.20505 1.21879 1.21842 1.22041 0.97252 0.94959 0.94791 1.21668 1.01271 0.94139 1.01546 1.21575 0.93639 1.02752 1.00318 1.22284 0.80945 1.00253 0.96715 0.92691 0.92662 0.92268 0.90161 0.92730 0.92979 0.92290 0.91793 0.91472 0.92054 0.92922 0.90563 0.77744 0.93432 0.92332 0.92872 0.92903 0.91230 0.93661 0.92111 0.91430 0.91472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 8.85 37.16 0.33 -1.06 16 2 C -0.08 -0.95 2.19 -90.63 -0.20 -1.15 16 3 C -0.15 -1.73 8.93 37.16 0.33 -1.40 16 4 C -0.10 -1.37 1.95 -91.78 -0.18 -1.55 16 5 H 0.09 1.10 6.90 -51.93 -0.36 0.74 16 6 C -0.14 -1.83 8.61 37.16 0.32 -1.51 16 7 C 0.53 9.07 5.79 -10.98 -0.06 9.00 16 8 O -0.56 -11.06 16.03 5.56 0.09 -10.97 16 9 N -0.60 -10.27 3.31 -170.38 -0.56 -10.83 16 10 C 0.07 1.22 5.62 -3.07 -0.02 1.20 16 11 C 0.18 3.24 2.86 -66.10 -0.19 3.05 16 12 H 0.07 1.24 8.03 -51.93 -0.42 0.82 16 13 N -0.71 -16.40 4.61 -51.65 -0.24 -16.63 16 14 C -0.25 -6.32 9.98 -15.06 -0.15 -6.47 16 15 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 16 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 17 N -0.93 -26.95 13.06 55.49 0.72 -26.22 16 18 Si 0.91 21.51 29.55 -169.99 -5.02 16.49 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 C -0.09 -1.39 0.83 -152.24 -0.13 -1.52 16 23 C -0.13 -1.67 8.59 37.16 0.32 -1.35 16 24 C -0.13 -1.99 8.22 37.16 0.31 -1.68 16 25 C 0.12 2.05 5.80 -2.41 -0.01 2.03 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.53 6.59 -51.93 -0.34 0.19 16 29 H 0.08 1.07 7.86 -51.93 -0.41 0.67 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.81 6.83 -51.93 -0.35 0.46 16 33 H 0.06 0.94 8.13 -51.93 -0.42 0.51 16 34 H 0.07 0.71 6.83 -51.93 -0.35 0.36 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.05 0.76 7.63 -51.93 -0.40 0.37 16 37 H 0.08 1.44 8.04 -51.93 -0.42 1.03 16 38 H 0.39 9.63 6.10 -40.82 -0.25 9.39 16 39 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.05 0.68 7.91 -51.93 -0.41 0.27 16 43 H 0.07 1.28 6.38 -51.93 -0.33 0.95 16 44 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.07 1.27 7.99 -51.93 -0.41 0.86 16 47 H 0.07 1.11 8.01 -51.93 -0.42 0.69 16 LS Contribution 364.25 15.07 5.49 5.49 Total: -1.00 -29.47 364.25 -7.60 -37.06 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -8.64 Total: 8.33 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: 0.57 Total: -2.71 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: -0.08 Total: -53.69 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.09 Total: -10.97 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.47 -7.60 -37.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996367774.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.573 kcal (2) G-P(sol) polarization free energy of solvation -29.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds