Wall clock time and date at job start Tue Mar 31 2020 05:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47020 * 2 1 4 4 C 1.50701 * 109.47022 * 119.99542 * 2 1 3 5 5 O 1.21280 * 120.00053 * 106.60689 * 4 2 1 6 6 N 1.34780 * 120.00151 * 286.60731 * 4 2 1 7 7 C 1.46928 * 120.63025 * 184.45216 * 6 4 2 8 8 C 1.53626 * 108.54148 * 126.36834 * 7 6 4 9 9 C 1.53036 * 109.24190 * 54.85454 * 8 7 6 10 10 C 1.53037 * 109.53975 * 298.50905 * 9 8 7 11 11 H 1.09000 * 109.50010 * 301.41552 * 10 9 8 12 12 N 1.46502 * 109.49696 * 181.31479 * 10 9 8 13 13 C 1.36938 * 120.00010 * 85.16518 * 12 10 9 14 14 H 1.08001 * 119.99537 * 359.97438 * 13 12 10 15 15 C 1.38803 * 120.00105 * 180.02562 * 13 12 10 16 16 N 1.31618 * 120.00349 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 120.00110 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46828 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47243 * 119.99697 * 17 15 13 20 20 H 1.48504 * 109.47012 * 239.99929 * 17 15 13 21 21 C 1.46924 * 120.62824 * 4.72891 * 6 4 2 22 22 C 1.53000 * 109.47274 * 239.99765 * 2 1 3 23 23 C 1.52996 * 109.47033 * 60.00062 * 22 2 1 24 24 C 1.52999 * 109.46922 * 179.97438 * 22 2 1 25 25 C 1.52997 * 109.47163 * 299.99733 * 22 2 1 26 26 H 1.08998 * 109.46917 * 181.45772 * 1 2 3 27 27 H 1.08995 * 109.47001 * 301.45859 * 1 2 3 28 28 H 1.08995 * 109.46891 * 61.46229 * 1 2 3 29 29 H 1.08992 * 109.58604 * 246.20168 * 7 6 4 30 30 H 1.09005 * 109.58427 * 6.62709 * 7 6 4 31 31 H 1.08999 * 109.63454 * 294.86107 * 8 7 6 32 32 H 1.08996 * 109.42779 * 174.72610 * 8 7 6 33 33 H 1.09000 * 109.46212 * 178.48869 * 9 8 7 34 34 H 1.09000 * 109.44788 * 58.52356 * 9 8 7 35 35 H 0.96998 * 119.99960 * 265.16230 * 12 10 9 36 36 H 0.97002 * 120.00594 * 179.97438 * 16 15 13 37 37 H 1.08997 * 109.59095 * 353.37502 * 21 6 4 38 38 H 1.09004 * 109.58029 * 113.79945 * 21 6 4 39 39 H 1.08999 * 109.47277 * 60.00257 * 23 22 2 40 40 H 1.09005 * 109.47073 * 180.02562 * 23 22 2 41 41 H 1.08997 * 109.47096 * 299.99974 * 23 22 2 42 42 H 1.09006 * 109.47273 * 60.00169 * 24 22 2 43 43 H 1.09005 * 109.46867 * 180.02562 * 24 22 2 44 44 H 1.08999 * 109.47500 * 299.99811 * 24 22 2 45 45 H 1.09007 * 109.46833 * 60.00256 * 25 22 2 46 46 H 1.08996 * 109.47004 * 179.97438 * 25 22 2 47 47 H 1.09000 * 109.47540 * 300.00345 * 25 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.5175 -1.8178 1.1359 6 7 1.9424 -0.1148 2.4363 7 6 2.5148 -0.7517 3.6303 8 6 3.4569 0.2506 4.3144 9 6 2.6942 1.5466 4.5983 10 6 2.2161 2.1585 3.2796 11 1 3.0743 2.3522 2.6361 12 7 1.5133 3.4152 3.5501 13 6 2.2202 4.5810 3.6789 14 1 3.2957 4.5738 3.5815 15 6 1.5544 5.7715 3.9357 16 7 0.2437 5.7802 4.0549 17 14 2.5187 7.3617 4.1121 18 1 3.9670 7.0843 3.9367 19 1 2.0709 8.3295 3.0787 20 1 2.2849 7.9352 5.4619 21 6 1.2649 1.1806 2.5827 22 6 2.0400 -0.7213 -1.2492 23 6 1.5301 -0.0001 -2.4984 24 6 3.5700 -0.7207 -1.2494 25 6 1.5301 -2.1638 -1.2491 26 1 -0.3633 -1.0273 0.0261 27 1 -0.3633 0.5363 0.8766 28 1 -0.3633 0.4909 -0.9028 29 1 1.7141 -1.0307 4.3150 30 1 3.0745 -1.6402 3.3377 31 1 4.3034 0.4622 3.6612 32 1 3.8172 -0.1724 5.2521 33 1 3.3518 2.2508 5.1080 34 1 1.8336 1.3301 5.2313 35 1 0.5473 3.4215 3.6379 36 1 -0.2216 6.6121 4.2348 37 1 0.9994 1.5675 1.5989 38 1 0.3642 1.0558 3.1839 39 1 1.8934 1.0275 -2.4985 40 1 1.8931 -0.5142 -3.3884 41 1 0.4401 -0.0001 -2.4985 42 1 3.9338 -1.2343 -0.3594 43 1 3.9334 -1.2342 -2.1397 44 1 3.9330 0.3071 -1.2497 45 1 0.4401 -2.1638 -1.2492 46 1 1.8931 -2.6775 -2.1393 47 1 1.8934 -2.6776 -0.3591 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999502161.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:11 Heat of formation + Delta-G solvation = -38.450670 kcal Electronic energy + Delta-G solvation = -24028.819981 eV Core-core repulsion = 20825.318519 eV Total energy + Delta-G solvation = -3203.501461 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.61744 -38.06379 -36.45370 -34.32926 -32.78143 -31.49560 -30.48084 -28.27893 -27.40322 -27.14325 -25.50169 -23.91135 -23.71728 -22.00560 -20.34373 -19.25773 -18.22994 -17.19267 -17.02736 -15.69733 -15.26942 -14.78680 -14.68097 -14.30841 -14.16189 -13.95198 -13.71951 -13.47978 -13.27757 -12.88599 -12.82407 -12.55732 -12.17920 -12.12346 -11.91191 -11.75684 -11.55013 -11.13991 -11.11602 -10.97787 -10.95130 -10.90532 -10.62851 -10.50574 -10.41745 -10.37455 -10.34147 -10.07856 -9.75003 -9.13683 -8.94569 -8.36254 -7.05454 -5.84325 -3.14132 2.79743 3.17382 3.38816 3.45387 3.46902 4.48411 4.58749 4.66472 4.82920 5.08840 5.17662 5.25830 5.31181 5.33779 5.38817 5.46651 5.47076 5.53699 5.60873 5.66364 5.75588 5.77235 5.78318 5.84401 5.88523 5.91637 5.96578 6.00098 6.03761 6.11306 6.17689 6.19370 6.30041 6.35388 6.37349 6.42328 6.51178 6.63668 6.78431 6.82864 6.99444 7.62264 7.65765 8.33301 8.39503 9.45305 9.99504 10.34646 11.38097 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018959 B = 0.004656 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.500118 B = 6011.898824 C = 6756.019644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.103 4.103 3 H 0.096 0.904 4 C 0.525 3.475 5 O -0.544 6.544 6 N -0.604 5.604 7 C 0.112 3.888 8 C -0.132 4.132 9 C -0.137 4.137 10 C 0.167 3.833 11 H 0.051 0.949 12 N -0.722 5.722 13 C -0.239 4.239 14 H 0.071 0.929 15 C -0.010 4.010 16 N -0.931 5.931 17 Si 0.906 3.094 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.291 1.291 21 C 0.097 3.903 22 C -0.045 4.045 23 C -0.144 4.144 24 C -0.148 4.148 25 C -0.161 4.161 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.384 0.616 36 H 0.255 0.745 37 H 0.090 0.910 38 H 0.068 0.932 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.058 0.942 42 H 0.070 0.930 43 H 0.051 0.949 44 H 0.048 0.952 45 H 0.046 0.954 46 H 0.043 0.957 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.876 -13.807 -7.747 15.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.124 4.124 3 H 0.114 0.886 4 C 0.314 3.686 5 O -0.423 6.423 6 N -0.336 5.336 7 C -0.010 4.010 8 C -0.171 4.171 9 C -0.178 4.178 10 C 0.056 3.944 11 H 0.069 0.931 12 N -0.363 5.363 13 C -0.371 4.371 14 H 0.089 0.911 15 C -0.207 4.207 16 N -0.580 5.580 17 Si 0.737 3.263 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.218 1.218 21 C -0.027 4.027 22 C -0.046 4.046 23 C -0.202 4.202 24 C -0.205 4.205 25 C -0.218 4.218 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.218 0.782 36 H 0.065 0.935 37 H 0.108 0.892 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.065 0.935 46 H 0.062 0.938 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.250 -14.228 -7.791 16.376 hybrid contribution 0.112 1.198 0.301 1.240 sum 2.362 -13.030 -7.490 15.214 Atomic orbital electron populations 1.21981 0.92953 1.02745 1.03202 1.21368 0.97632 1.00689 0.92745 0.88598 1.20607 0.77951 0.85791 0.84267 1.90485 1.46442 1.19880 1.85506 1.48155 1.56426 1.21579 1.07487 1.21673 0.96852 0.96277 0.86208 1.21998 0.98399 0.96616 1.00054 1.22271 0.99821 0.95228 1.00444 1.20501 0.94125 0.86270 0.93524 0.93133 1.42325 1.06514 1.01782 1.85678 1.19243 0.91262 0.85424 1.41124 0.91100 1.24728 0.95589 0.97795 1.02542 1.69661 1.06188 1.26317 1.55796 0.86143 0.78968 0.83893 0.77333 1.20537 1.21801 1.21830 1.22269 0.95784 0.82254 1.02345 1.20262 0.95764 0.95782 0.92775 1.21967 1.01149 1.00216 0.96840 1.21984 0.94498 1.01401 1.02632 1.22325 1.00157 0.95566 1.03737 0.91941 0.91550 0.91113 0.91887 0.89547 0.91990 0.91538 0.91631 0.92527 0.78220 0.93477 0.89216 0.91411 0.92598 0.92697 0.92334 0.91065 0.93035 0.93256 0.93482 0.93804 0.88518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.13 37.16 0.30 -1.41 16 2 C -0.10 -1.30 1.24 -91.77 -0.11 -1.41 16 3 H 0.10 1.26 7.18 -51.93 -0.37 0.88 16 4 C 0.52 7.66 6.27 -10.98 -0.07 7.59 16 5 O -0.54 -8.83 11.02 5.56 0.06 -8.77 16 6 N -0.60 -8.76 2.97 -172.50 -0.51 -9.27 16 7 C 0.11 1.53 6.45 -3.48 -0.02 1.51 16 8 C -0.13 -1.82 6.10 -26.39 -0.16 -1.99 16 9 C -0.14 -2.32 5.46 -26.69 -0.15 -2.47 16 10 C 0.17 3.10 2.92 -67.81 -0.20 2.90 16 11 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 12 N -0.72 -16.91 5.12 -53.31 -0.27 -17.18 16 13 C -0.24 -6.34 9.93 -15.06 -0.15 -6.49 16 14 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 15 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 16 N -0.93 -27.06 13.06 55.49 0.72 -26.34 16 17 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 C 0.10 1.50 4.79 -3.71 -0.02 1.48 16 22 C -0.05 -0.53 0.54 -154.51 -0.08 -0.62 16 23 C -0.14 -1.46 8.12 37.16 0.30 -1.16 16 24 C -0.15 -1.81 8.18 37.16 0.30 -1.51 16 25 C -0.16 -1.92 7.82 37.16 0.29 -1.63 16 26 H 0.06 0.70 6.51 -51.93 -0.34 0.36 16 27 H 0.07 0.78 6.02 -51.93 -0.31 0.46 16 28 H 0.07 0.71 6.35 -51.93 -0.33 0.38 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.09 1.19 7.03 -51.93 -0.37 0.82 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.38 9.51 7.80 -40.82 -0.32 9.19 16 36 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 37 H 0.09 1.35 4.67 -51.93 -0.24 1.10 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.55 6.40 -51.93 -0.33 0.22 16 42 H 0.07 1.01 6.02 -51.93 -0.31 0.69 16 43 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.05 0.52 6.46 -51.93 -0.34 0.19 16 46 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.10 1.37 5.07 -51.93 -0.26 1.11 16 LS Contribution 347.78 15.07 5.24 5.24 Total: -1.00 -28.76 347.78 -7.78 -36.54 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -8.14 Total: 8.65 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: 0.14 Total: -5.60 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: -0.06 Total: -52.79 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.06 Total: -8.77 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.76 -7.78 -36.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999502161.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.911 kcal (2) G-P(sol) polarization free energy of solvation -28.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds