Wall clock time and date at job start Tue Mar 31 2020 05:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47020 * 2 1 4 4 C 1.50701 * 109.47022 * 119.99542 * 2 1 3 5 5 O 1.21280 * 120.00053 * 106.60689 * 4 2 1 6 6 N 1.34780 * 120.00151 * 286.60731 * 4 2 1 7 7 C 1.46928 * 120.63025 * 184.45216 * 6 4 2 8 8 C 1.53626 * 108.54148 * 126.36834 * 7 6 4 9 9 C 1.53036 * 109.24190 * 54.85454 * 8 7 6 10 10 C 1.53037 * 109.53975 * 298.50905 * 9 8 7 11 11 H 1.09000 * 109.50010 * 301.41552 * 10 9 8 12 12 N 1.46502 * 109.49696 * 181.31479 * 10 9 8 13 13 C 1.36938 * 120.00010 * 85.16518 * 12 10 9 14 14 H 1.08001 * 119.99537 * 359.97438 * 13 12 10 15 15 C 1.38803 * 120.00105 * 180.02562 * 13 12 10 16 16 N 1.31618 * 120.00349 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 120.00110 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46828 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47243 * 119.99697 * 17 15 13 20 20 H 1.48504 * 109.47012 * 239.99929 * 17 15 13 21 21 C 1.46924 * 120.62824 * 4.72891 * 6 4 2 22 22 C 1.53000 * 109.47274 * 239.99765 * 2 1 3 23 23 C 1.52996 * 109.47033 * 60.00062 * 22 2 1 24 24 C 1.52999 * 109.46922 * 179.97438 * 22 2 1 25 25 C 1.52997 * 109.47163 * 299.99733 * 22 2 1 26 26 H 1.08998 * 109.46917 * 181.45772 * 1 2 3 27 27 H 1.08995 * 109.47001 * 301.45859 * 1 2 3 28 28 H 1.08995 * 109.46891 * 61.46229 * 1 2 3 29 29 H 1.08992 * 109.58604 * 246.20168 * 7 6 4 30 30 H 1.09005 * 109.58427 * 6.62709 * 7 6 4 31 31 H 1.08999 * 109.63454 * 294.86107 * 8 7 6 32 32 H 1.08996 * 109.42779 * 174.72610 * 8 7 6 33 33 H 1.09000 * 109.46212 * 178.48869 * 9 8 7 34 34 H 1.09000 * 109.44788 * 58.52356 * 9 8 7 35 35 H 0.96998 * 119.99960 * 265.16230 * 12 10 9 36 36 H 0.97002 * 120.00594 * 179.97438 * 16 15 13 37 37 H 1.08997 * 109.59095 * 353.37502 * 21 6 4 38 38 H 1.09004 * 109.58029 * 113.79945 * 21 6 4 39 39 H 1.08999 * 109.47277 * 60.00257 * 23 22 2 40 40 H 1.09005 * 109.47073 * 180.02562 * 23 22 2 41 41 H 1.08997 * 109.47096 * 299.99974 * 23 22 2 42 42 H 1.09006 * 109.47273 * 60.00169 * 24 22 2 43 43 H 1.09005 * 109.46867 * 180.02562 * 24 22 2 44 44 H 1.08999 * 109.47500 * 299.99811 * 24 22 2 45 45 H 1.09007 * 109.46833 * 60.00256 * 25 22 2 46 46 H 1.08996 * 109.47004 * 179.97438 * 25 22 2 47 47 H 1.09000 * 109.47540 * 300.00345 * 25 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.5175 -1.8178 1.1359 6 7 1.9424 -0.1148 2.4363 7 6 2.5148 -0.7517 3.6303 8 6 3.4569 0.2506 4.3144 9 6 2.6942 1.5466 4.5983 10 6 2.2161 2.1585 3.2796 11 1 3.0743 2.3522 2.6361 12 7 1.5133 3.4152 3.5501 13 6 2.2202 4.5810 3.6789 14 1 3.2957 4.5738 3.5815 15 6 1.5544 5.7715 3.9357 16 7 0.2437 5.7802 4.0549 17 14 2.5187 7.3617 4.1121 18 1 3.9670 7.0843 3.9367 19 1 2.0709 8.3295 3.0787 20 1 2.2849 7.9352 5.4619 21 6 1.2649 1.1806 2.5827 22 6 2.0400 -0.7213 -1.2492 23 6 1.5301 -0.0001 -2.4984 24 6 3.5700 -0.7207 -1.2494 25 6 1.5301 -2.1638 -1.2491 26 1 -0.3633 -1.0273 0.0261 27 1 -0.3633 0.5363 0.8766 28 1 -0.3633 0.4909 -0.9028 29 1 1.7141 -1.0307 4.3150 30 1 3.0745 -1.6402 3.3377 31 1 4.3034 0.4622 3.6612 32 1 3.8172 -0.1724 5.2521 33 1 3.3518 2.2508 5.1080 34 1 1.8336 1.3301 5.2313 35 1 0.5473 3.4215 3.6379 36 1 -0.2216 6.6121 4.2348 37 1 0.9994 1.5675 1.5989 38 1 0.3642 1.0558 3.1839 39 1 1.8934 1.0275 -2.4985 40 1 1.8931 -0.5142 -3.3884 41 1 0.4401 -0.0001 -2.4985 42 1 3.9338 -1.2343 -0.3594 43 1 3.9334 -1.2342 -2.1397 44 1 3.9330 0.3071 -1.2497 45 1 0.4401 -2.1638 -1.2492 46 1 1.8931 -2.6775 -2.1393 47 1 1.8934 -2.6776 -0.3591 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999502161.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:10 Heat of formation + Delta-G solvation = -54.311259 kcal Electronic energy + Delta-G solvation = -24029.507748 eV Core-core repulsion = 20825.318519 eV Total energy + Delta-G solvation = -3204.189228 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.75463 -39.29699 -37.61455 -36.00400 -34.07073 -33.18684 -31.57610 -29.92299 -28.35205 -28.03440 -26.67770 -25.73380 -24.83600 -23.34093 -21.69913 -20.46552 -19.50756 -18.89827 -18.18613 -16.97470 -16.68043 -16.16915 -15.81099 -15.62009 -15.45607 -15.28231 -14.98822 -14.84711 -14.50522 -14.39305 -13.98362 -13.71562 -13.27729 -13.15263 -12.97883 -12.89016 -12.77683 -12.68872 -12.53276 -12.32658 -12.16751 -12.09783 -12.07351 -11.89387 -11.80626 -11.65062 -11.57202 -11.40244 -11.33083 -10.91563 -10.22736 -9.60882 -8.99800 -7.93668 -5.22132 1.48495 1.49629 1.58509 1.64475 2.00844 2.57563 3.39953 3.44666 3.68207 3.87853 3.92742 3.96277 4.03033 4.10896 4.20001 4.36086 4.36386 4.39306 4.48897 4.54303 4.56983 4.75366 4.81721 4.82475 4.86914 4.87028 4.93428 4.94210 5.01522 5.06551 5.09263 5.10420 5.13995 5.23988 5.28917 5.36676 5.39278 5.50350 5.52360 5.57682 5.59908 5.74497 6.28112 6.45461 7.23419 7.35777 8.07802 8.32721 9.29440 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018959 B = 0.004656 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.500118 B = 6011.898824 C = 6756.019644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.102 4.102 3 H 0.090 0.910 4 C 0.521 3.479 5 O -0.559 6.559 6 N -0.605 5.605 7 C 0.112 3.888 8 C -0.120 4.120 9 C -0.129 4.129 10 C 0.164 3.836 11 H 0.038 0.962 12 N -0.731 5.731 13 C -0.236 4.236 14 H 0.071 0.929 15 C -0.068 4.068 16 N -0.965 5.965 17 Si 0.965 3.035 18 H -0.269 1.269 19 H -0.293 1.293 20 H -0.295 1.295 21 C 0.111 3.889 22 C -0.046 4.046 23 C -0.141 4.141 24 C -0.146 4.146 25 C -0.156 4.156 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.044 0.956 34 H 0.055 0.945 35 H 0.376 0.624 36 H 0.251 0.749 37 H 0.095 0.905 38 H 0.072 0.928 39 H 0.054 0.946 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.049 0.951 43 H 0.062 0.938 44 H 0.048 0.952 45 H 0.054 0.946 46 H 0.052 0.948 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.154 -14.539 -8.523 16.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.123 4.123 3 H 0.108 0.892 4 C 0.312 3.688 5 O -0.439 6.439 6 N -0.338 5.338 7 C -0.010 4.010 8 C -0.159 4.159 9 C -0.170 4.170 10 C 0.055 3.945 11 H 0.056 0.944 12 N -0.371 5.371 13 C -0.368 4.368 14 H 0.089 0.911 15 C -0.260 4.260 16 N -0.616 5.616 17 Si 0.795 3.205 18 H -0.194 1.194 19 H -0.220 1.220 20 H -0.222 1.222 21 C -0.012 4.012 22 C -0.046 4.046 23 C -0.198 4.198 24 C -0.203 4.203 25 C -0.213 4.213 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.105 0.895 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.075 0.925 32 H 0.109 0.891 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.208 0.792 36 H 0.060 0.940 37 H 0.113 0.887 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.068 0.932 43 H 0.081 0.919 44 H 0.067 0.933 45 H 0.073 0.927 46 H 0.071 0.929 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.566 -15.001 -8.573 17.468 hybrid contribution 0.083 1.329 0.534 1.435 sum 2.649 -13.672 -8.039 16.080 Atomic orbital electron populations 1.21972 0.91780 1.03015 1.03764 1.21411 0.98563 1.00116 0.92253 0.89157 1.20987 0.77523 0.85664 0.84668 1.90499 1.47049 1.20647 1.85735 1.48186 1.56479 1.21071 1.08018 1.21746 0.97188 0.96022 0.86078 1.21902 0.97750 0.95006 1.01201 1.22101 0.99676 0.96233 0.98947 1.20650 0.94053 0.85383 0.94430 0.94389 1.42439 1.06196 1.02735 1.85764 1.19534 0.91469 0.86523 1.39228 0.91066 1.25422 0.96423 1.00663 1.03541 1.69791 1.07501 1.26613 1.57691 0.85199 0.78300 0.80335 0.76685 1.19388 1.22047 1.22236 1.22007 0.94943 0.81997 1.02282 1.20294 0.95315 0.95856 0.93143 1.21938 1.01730 1.00006 0.96156 1.21951 0.95071 1.01159 1.02099 1.22238 1.00619 0.95421 1.03016 0.91706 0.92090 0.89549 0.90608 0.89394 0.92527 0.89113 0.93676 0.92605 0.79174 0.94010 0.88712 0.90967 0.92649 0.91705 0.91399 0.93240 0.91879 0.93324 0.92660 0.92882 0.90789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 8.13 71.98 0.58 -2.49 16 2 C -0.10 -2.45 1.24 -11.54 -0.01 -2.46 16 3 H 0.09 2.27 7.18 -2.38 -0.02 2.25 16 4 C 0.52 14.70 6.27 87.66 0.55 15.25 16 5 O -0.56 -17.74 11.02 -3.03 -0.03 -17.78 16 6 N -0.61 -16.86 2.97 -818.05 -2.43 -19.29 16 7 C 0.11 2.85 6.45 86.51 0.56 3.41 16 8 C -0.12 -3.13 6.10 30.82 0.19 -2.94 16 9 C -0.13 -4.29 5.46 30.62 0.17 -4.12 16 10 C 0.16 6.05 2.92 45.07 0.13 6.18 16 11 H 0.04 1.50 8.08 -2.39 -0.02 1.48 16 12 N -0.73 -34.36 5.12 -322.58 -1.65 -36.01 16 13 C -0.24 -12.49 9.93 84.03 0.83 -11.66 16 14 H 0.07 3.70 7.83 -2.91 -0.02 3.68 16 15 C -0.07 -3.74 5.50 84.86 0.47 -3.27 16 16 N -0.97 -56.66 13.06 21.65 0.28 -56.37 16 17 Si 0.96 44.82 29.55 68.60 2.03 46.85 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 19 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 20 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 21 C 0.11 3.35 4.79 86.36 0.41 3.76 16 22 C -0.05 -1.00 0.54 -52.18 -0.03 -1.03 16 23 C -0.14 -2.52 8.12 71.98 0.58 -1.94 16 24 C -0.15 -3.42 8.18 71.98 0.59 -2.83 16 25 C -0.16 -3.47 7.82 71.98 0.56 -2.91 16 26 H 0.06 1.32 6.51 -2.39 -0.02 1.30 16 27 H 0.06 1.33 6.02 -2.39 -0.01 1.32 16 28 H 0.09 1.52 6.35 -2.39 -0.02 1.51 16 29 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.09 2.28 7.03 -2.38 -0.02 2.26 16 31 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.38 18.78 7.80 -92.71 -0.72 18.06 16 36 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 37 H 0.09 2.77 4.67 -2.39 -0.01 2.76 16 38 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 39 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 41 H 0.07 1.09 6.40 -2.39 -0.02 1.07 16 42 H 0.05 1.37 6.02 -2.38 -0.01 1.36 16 43 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 44 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.05 1.12 6.46 -2.38 -0.02 1.10 16 46 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.07 2.03 5.07 -2.39 -0.01 2.02 16 Total: -1.00 -60.81 347.78 4.01 -56.80 By element: Atomic # 1 Polarization: 32.61 SS G_CDS: 0.22 Total: 32.84 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: 5.59 Total: -7.04 kcal Atomic # 7 Polarization: -107.87 SS G_CDS: -3.80 Total: -111.67 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.03 Total: -17.78 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -60.81 4.01 -56.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999502161.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.486 kcal (2) G-P(sol) polarization free energy of solvation -60.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds