Wall clock time and date at job start Tue Mar 31 2020 05:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46908 * 2 1 4 4 C 1.52997 * 109.46877 * 119.99446 * 2 1 3 5 5 H 1.09002 * 109.47449 * 299.99971 * 4 2 1 6 6 C 1.53001 * 109.47383 * 60.00320 * 4 2 1 7 7 C 1.50706 * 109.47269 * 180.02562 * 4 2 1 8 8 O 1.21279 * 119.99660 * 349.98613 * 7 4 2 9 9 N 1.34780 * 120.00041 * 169.98642 * 7 4 2 10 10 C 1.46923 * 120.62928 * 357.16647 * 9 7 4 11 11 C 1.53187 * 108.77483 * 233.62529 * 10 9 7 12 12 C 1.53036 * 109.31842 * 305.36965 * 11 10 9 13 13 C 1.53048 * 109.53754 * 61.36129 * 12 11 10 14 14 H 1.09003 * 109.49263 * 58.58830 * 13 12 11 15 15 N 1.46500 * 109.49831 * 178.68675 * 13 12 11 16 16 C 1.46503 * 120.00070 * 59.99783 * 15 13 12 17 17 C 1.36934 * 119.99711 * 239.99991 * 15 13 12 18 18 H 1.07999 * 120.00051 * 17.58743 * 17 15 13 19 19 C 1.38816 * 119.99817 * 197.58693 * 17 15 13 20 20 N 1.31610 * 120.00043 * 17.52763 * 19 17 15 21 21 Si 1.86803 * 119.99921 * 197.52830 * 19 17 15 22 22 H 1.48501 * 109.46993 * 60.00081 * 21 19 17 23 23 H 1.48498 * 109.47028 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47284 * 300.00157 * 21 19 17 25 25 C 1.46924 * 120.62939 * 177.18778 * 9 7 4 26 26 H 1.08991 * 109.47328 * 300.00774 * 1 2 3 27 27 H 1.09009 * 109.46755 * 60.00785 * 1 2 3 28 28 H 1.09001 * 109.46961 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47776 * 239.99712 * 2 1 3 30 30 H 1.09002 * 109.46977 * 179.97438 * 3 2 1 31 31 H 1.09009 * 109.46771 * 299.99204 * 3 2 1 32 32 H 1.08994 * 109.47318 * 59.99767 * 3 2 1 33 33 H 1.09006 * 109.47097 * 54.69962 * 6 4 2 34 34 H 1.08994 * 109.47695 * 174.70247 * 6 4 2 35 35 H 1.09003 * 109.47050 * 294.70581 * 6 4 2 36 36 H 1.09004 * 109.58085 * 113.84276 * 10 9 7 37 37 H 1.09002 * 109.70886 * 353.48840 * 10 9 7 38 38 H 1.09003 * 109.49989 * 185.41380 * 11 10 9 39 39 H 1.09009 * 109.49660 * 65.32297 * 11 10 9 40 40 H 1.09001 * 109.46220 * 181.37871 * 12 11 10 41 41 H 1.09002 * 109.46171 * 301.34280 * 12 11 10 42 42 H 1.09000 * 109.46570 * 93.69852 * 16 15 13 43 43 H 1.08993 * 109.47014 * 213.69595 * 16 15 13 44 44 H 1.09001 * 109.46964 * 333.69935 * 16 15 13 45 45 H 0.97003 * 120.00157 * 180.02562 * 20 19 17 46 46 H 1.09001 * 109.58667 * 246.15910 * 25 9 7 47 47 H 1.09006 * 109.58603 * 6.58505 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2493 5 1 1.6766 -0.2072 2.1393 6 6 1.5300 -2.1637 1.2494 7 6 3.5470 -0.7206 1.2497 8 8 4.1535 -0.3614 0.2628 9 7 4.2207 -1.1194 2.3468 10 6 3.5013 -1.4984 3.5705 11 6 4.0585 -0.6840 4.7422 12 6 5.5745 -0.8787 4.8186 13 6 6.2213 -0.3720 3.5273 14 1 5.9769 0.6809 3.3870 15 7 7.6751 -0.5300 3.6140 16 6 8.2574 -1.8611 3.8024 17 6 8.4898 0.5666 3.5190 18 1 8.0826 1.5561 3.6652 19 6 9.8390 0.4062 3.2348 20 7 10.2738 -0.7257 2.7230 21 14 11.0377 1.7971 3.5789 22 1 11.0126 2.1253 5.0270 23 1 12.4081 1.3768 3.1908 24 1 10.6454 2.9944 2.7931 25 6 5.6886 -1.1830 2.3419 26 1 -0.3633 0.5139 0.8898 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8935 -0.5138 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.8138 -2.6495 0.3158 34 1 1.9686 -2.7041 2.0882 35 1 0.4441 -2.1651 1.3442 36 1 3.6441 -2.5616 3.7638 37 1 2.4383 -1.2881 3.4520 38 1 3.6008 -1.0234 5.6715 39 1 3.8345 0.3720 4.5904 40 1 5.9702 -0.3197 5.6665 41 1 5.7986 -1.9378 4.9456 42 1 8.5098 -2.2878 2.8317 43 1 9.1591 -1.7806 4.4094 44 1 7.5365 -2.5050 4.3061 45 1 11.2167 -0.8378 2.5247 46 1 6.0097 -2.2204 2.4350 47 1 6.0694 -0.7626 1.4110 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027604099.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:30 Heat of formation + Delta-G solvation = -46.199941 kcal Electronic energy + Delta-G solvation = -23941.298746 eV Core-core repulsion = 20737.461251 eV Total energy + Delta-G solvation = -3203.837495 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.52613 -39.20632 -37.03862 -36.79763 -34.07267 -32.82030 -31.87688 -30.20324 -28.14833 -28.07176 -26.62789 -25.36142 -24.68506 -23.02247 -21.86619 -20.47359 -19.73236 -18.80292 -18.19136 -17.14254 -16.91110 -16.22687 -15.80279 -15.52027 -15.39643 -15.21196 -15.04082 -14.63399 -14.40522 -14.27181 -13.85408 -13.65437 -13.49474 -13.13860 -13.06944 -12.95963 -12.89790 -12.75131 -12.47995 -12.38921 -12.23079 -12.14162 -12.07263 -11.91304 -11.73064 -11.66788 -11.51063 -11.43267 -11.38264 -10.63770 -10.51642 -9.64150 -8.83284 -7.87294 -5.29584 1.43336 1.45473 1.52584 1.69438 2.03726 2.49683 3.25564 3.52611 3.60512 3.75067 3.94482 4.00958 4.07036 4.12451 4.24592 4.31367 4.36904 4.44746 4.56738 4.61774 4.63366 4.70832 4.78188 4.83478 4.88446 4.91715 4.94315 4.98137 5.04628 5.07395 5.11124 5.16646 5.25123 5.25653 5.35111 5.41748 5.48244 5.53015 5.55299 5.57725 5.61772 5.68427 6.27494 6.54362 7.10987 7.27172 7.84437 8.25362 9.16598 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023563 B = 0.004369 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.042168 B = 6406.981521 C = 6926.311211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.077 4.077 3 C -0.154 4.154 4 C -0.096 4.096 5 H 0.119 0.881 6 C -0.143 4.143 7 C 0.504 3.496 8 O -0.592 6.592 9 N -0.607 5.607 10 C 0.101 3.899 11 C -0.123 4.123 12 C -0.122 4.122 13 C 0.167 3.833 14 H 0.041 0.959 15 N -0.610 5.610 16 C 0.181 3.819 17 C -0.268 4.268 18 H 0.067 0.933 19 C -0.053 4.053 20 N -0.937 5.937 21 Si 0.968 3.032 22 H -0.275 1.275 23 H -0.292 1.292 24 H -0.280 1.280 25 C 0.114 3.886 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.052 0.948 30 H 0.033 0.967 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.045 0.955 34 H 0.072 0.928 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.120 0.880 38 H 0.110 0.890 39 H 0.061 0.939 40 H 0.055 0.945 41 H 0.063 0.937 42 H -0.006 1.006 43 H 0.021 0.979 44 H 0.036 0.964 45 H 0.249 0.751 46 H 0.056 0.944 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.681 -3.084 3.150 24.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.096 4.096 3 C -0.211 4.211 4 C -0.117 4.117 5 H 0.137 0.863 6 C -0.201 4.201 7 C 0.294 3.706 8 O -0.472 6.472 9 N -0.339 5.339 10 C -0.020 4.020 11 C -0.162 4.162 12 C -0.162 4.162 13 C 0.059 3.941 14 H 0.059 0.941 15 N -0.333 5.333 16 C 0.036 3.964 17 C -0.398 4.398 18 H 0.085 0.915 19 C -0.248 4.248 20 N -0.584 5.584 21 Si 0.796 3.204 22 H -0.201 1.201 23 H -0.218 1.218 24 H -0.206 1.206 25 C -0.011 4.011 26 H 0.088 0.912 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.119 0.881 36 H 0.102 0.898 37 H 0.138 0.862 38 H 0.128 0.872 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.012 0.988 43 H 0.040 0.960 44 H 0.055 0.945 45 H 0.058 0.942 46 H 0.074 0.926 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -23.187 -2.953 2.609 23.519 hybrid contribution 1.864 0.752 -0.440 2.058 sum -21.323 -2.201 2.169 21.546 Atomic orbital electron populations 1.21850 0.92121 1.03009 1.02672 1.20916 0.97185 0.95293 0.96213 1.21938 1.00707 0.96567 1.01930 1.21459 0.88165 1.00456 1.01657 0.86292 1.21915 1.03430 0.92118 1.02591 1.21630 0.91838 0.75376 0.81772 1.90651 1.71727 1.49319 1.35522 1.48360 1.06028 1.65728 1.13827 1.22182 0.97563 0.99967 0.82320 1.21909 0.94041 1.00728 0.99503 1.21922 0.96013 1.01303 0.96938 1.20772 0.82906 0.96743 0.93629 0.94078 1.44225 1.00788 1.04283 1.83962 1.20483 0.94628 0.84534 0.96748 1.19522 0.90836 0.87774 1.41645 0.91539 1.25670 0.99587 0.99667 0.99841 1.70271 1.14170 1.27267 1.46682 0.85329 0.77917 0.78856 0.78308 1.20072 1.21823 1.20613 1.21910 0.79828 0.99767 0.99601 0.91206 0.92388 0.90888 0.92942 0.94764 0.92333 0.91938 0.93544 0.90930 0.88127 0.89822 0.86248 0.87212 0.92041 0.92600 0.91788 0.98813 0.95976 0.94520 0.94220 0.92572 0.94203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 8.84 71.98 0.64 -1.20 16 2 C -0.08 -1.63 2.12 -10.79 -0.02 -1.65 16 3 C -0.15 -3.81 8.88 71.98 0.64 -3.17 16 4 C -0.10 -1.93 1.46 -11.54 -0.02 -1.95 16 5 H 0.12 1.76 7.01 -2.39 -0.02 1.75 16 6 C -0.14 -2.07 8.31 71.98 0.60 -1.47 16 7 C 0.50 16.02 6.50 87.66 0.57 16.59 16 8 O -0.59 -25.28 13.51 -3.02 -0.04 -25.32 16 9 N -0.61 -18.51 2.97 -818.91 -2.43 -20.94 16 10 C 0.10 1.95 5.05 86.36 0.44 2.38 16 11 C -0.12 -2.57 6.08 30.67 0.19 -2.38 16 12 C -0.12 -3.81 5.13 30.62 0.16 -3.66 16 13 C 0.17 7.02 2.74 45.07 0.12 7.15 16 14 H 0.04 1.87 7.83 -2.39 -0.02 1.86 16 15 N -0.61 -31.64 2.82 -702.33 -1.98 -33.62 16 16 C 0.18 9.13 7.93 127.77 1.01 10.14 16 17 C -0.27 -15.44 9.64 84.04 0.81 -14.63 16 18 H 0.07 3.77 7.80 -2.91 -0.02 3.75 16 19 C -0.05 -3.07 5.01 84.86 0.43 -2.64 16 20 N -0.94 -57.55 10.67 21.65 0.23 -57.32 16 21 Si 0.97 46.83 29.59 68.60 2.03 48.86 16 22 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 23 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 24 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 25 C 0.11 4.65 5.80 86.36 0.50 5.15 16 26 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 28 H 0.07 0.75 6.55 -2.39 -0.02 0.73 16 29 H 0.05 1.36 7.99 -2.39 -0.02 1.34 16 30 H 0.03 1.14 5.88 -2.39 -0.01 1.12 16 31 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 32 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 34 H 0.07 0.93 6.24 -2.39 -0.01 0.92 16 35 H 0.10 0.85 6.73 -2.39 -0.02 0.83 16 36 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 37 H 0.12 1.46 5.06 -2.39 -0.01 1.45 16 38 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 40 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.06 1.94 6.71 -2.39 -0.02 1.92 16 42 H -0.01 -0.36 7.55 -2.39 -0.02 -0.38 16 43 H 0.02 1.19 6.99 -2.39 -0.02 1.18 16 44 H 0.04 1.54 6.46 -2.39 -0.02 1.52 16 45 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 46 H 0.06 2.29 7.51 -2.39 -0.02 2.27 16 47 H 0.04 2.00 7.00 -2.38 -0.02 1.99 16 Total: -1.00 -75.28 349.28 4.78 -70.50 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: 0.92 Total: 9.17 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: 6.06 Total: 8.66 kcal Atomic # 7 Polarization: -107.70 SS G_CDS: -4.18 Total: -111.88 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: -0.04 Total: -25.32 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Total: -75.28 4.78 -70.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027604099.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.300 kcal (2) G-P(sol) polarization free energy of solvation -75.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds