Wall clock time and date at job start Tue Mar 31 2020 05:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47054 * 2 1 4 4 C 1.52995 * 109.47678 * 120.00246 * 2 1 3 5 5 H 1.09002 * 109.47108 * 299.99935 * 4 2 1 6 6 C 1.53000 * 109.47079 * 59.99769 * 4 2 1 7 7 C 1.50699 * 109.47654 * 179.97438 * 4 2 1 8 8 O 1.21283 * 119.99837 * 335.14961 * 7 4 2 9 9 N 1.34775 * 120.00443 * 155.14656 * 7 4 2 10 10 C 1.46931 * 120.62542 * 355.85499 * 9 7 4 11 11 C 1.53192 * 108.77311 * 126.37204 * 10 9 7 12 12 C 1.53040 * 109.31525 * 54.62947 * 11 10 9 13 13 C 1.53065 * 109.66094 * 298.70289 * 12 11 10 14 14 H 1.09001 * 109.39082 * 301.27492 * 13 12 11 15 15 N 1.46503 * 109.62306 * 181.17017 * 13 12 11 16 16 C 1.46500 * 119.99666 * 300.10204 * 15 13 12 17 17 C 1.36937 * 120.00361 * 120.10832 * 15 13 12 18 18 H 1.08001 * 119.99568 * 24.69122 * 17 15 13 19 19 C 1.38807 * 120.00199 * 204.69598 * 17 15 13 20 20 N 1.31626 * 119.99683 * 6.72416 * 19 17 15 21 21 Si 1.86797 * 120.00146 * 186.72592 * 19 17 15 22 22 H 1.48501 * 109.47240 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47235 * 119.99887 * 21 19 17 24 24 H 1.48503 * 109.47122 * 239.99917 * 21 19 17 25 25 C 1.46924 * 120.63510 * 175.83411 * 9 7 4 26 26 H 1.09002 * 109.46798 * 299.99629 * 1 2 3 27 27 H 1.08996 * 109.47725 * 59.99568 * 1 2 3 28 28 H 1.09000 * 109.46726 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47212 * 240.00059 * 2 1 3 30 30 H 1.09003 * 109.47037 * 180.02562 * 3 2 1 31 31 H 1.08995 * 109.47141 * 299.99966 * 3 2 1 32 32 H 1.09002 * 109.47015 * 60.00504 * 3 2 1 33 33 H 1.09001 * 109.47170 * 64.28259 * 6 4 2 34 34 H 1.08999 * 109.47537 * 184.28321 * 6 4 2 35 35 H 1.09000 * 109.47120 * 304.28491 * 6 4 2 36 36 H 1.09004 * 109.58546 * 246.15307 * 10 9 7 37 37 H 1.08992 * 109.59006 * 6.43849 * 10 9 7 38 38 H 1.08997 * 109.49885 * 174.58664 * 11 10 9 39 39 H 1.09000 * 109.49431 * 294.68168 * 11 10 9 40 40 H 1.09001 * 109.45688 * 58.65644 * 12 11 10 41 41 H 1.09003 * 109.46232 * 178.62662 * 12 11 10 42 42 H 1.08998 * 109.47087 * 95.13157 * 16 15 13 43 43 H 1.09000 * 109.47161 * 215.12739 * 16 15 13 44 44 H 1.08998 * 109.47265 * 335.12686 * 16 15 13 45 45 H 0.97005 * 119.99407 * 179.97438 * 20 19 17 46 46 H 1.09004 * 109.58109 * 353.41711 * 25 9 7 47 47 H 1.09001 * 109.58668 * 113.69638 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.6768 -0.2075 2.1392 6 6 1.5301 -2.1638 1.2491 7 6 3.5471 -0.7218 1.2488 8 8 4.1533 -0.6279 0.2026 9 7 4.2212 -0.8266 2.4111 10 6 3.5037 -0.8499 3.6931 11 6 3.9381 -2.0913 4.4787 12 6 5.4627 -2.0985 4.6113 13 6 6.1004 -2.1592 3.2211 14 1 5.7587 -3.0564 2.7051 15 7 7.5593 -2.1942 3.3501 16 6 8.2626 -1.0937 4.0137 17 6 8.2656 -3.2556 2.8502 18 1 7.8547 -3.8464 2.0449 19 6 9.5096 -3.5721 3.3785 20 7 9.9525 -2.9386 4.4439 21 14 10.5549 -4.8968 2.5775 22 1 9.8352 -5.4530 1.4037 23 1 11.8450 -4.3093 2.1350 24 1 10.8154 -5.9818 3.5575 25 6 5.6875 -0.9202 2.4203 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6766 1.9563 0.8901 33 1 1.9546 -2.6992 0.3999 34 1 1.8295 -2.6551 2.1749 35 1 0.4428 -2.1647 1.1725 36 1 3.7458 0.0468 4.2637 37 1 2.4299 -0.8878 3.5103 38 1 3.4867 -2.0705 5.4706 39 1 3.6147 -2.9879 3.9500 40 1 5.7874 -1.1898 5.1182 41 1 5.7727 -2.9681 5.1910 42 1 8.4262 -1.3464 5.0613 43 1 9.2231 -0.9293 3.5254 44 1 7.6617 -0.1866 3.9483 45 1 10.8217 -3.1601 4.8133 46 1 6.0544 -1.0071 1.3976 47 1 6.1076 -0.0281 2.8847 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027604100.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:33 Heat of formation + Delta-G solvation = -29.022441 kcal Electronic energy + Delta-G solvation = -23898.639991 eV Core-core repulsion = 20695.547369 eV Total energy + Delta-G solvation = -3203.092623 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.30307 -37.79283 -36.01969 -35.07572 -32.35951 -31.33865 -30.82028 -28.71718 -27.40457 -25.99675 -25.37454 -24.05650 -23.31571 -21.64384 -20.73869 -19.14798 -18.33100 -17.21966 -16.70119 -15.83900 -15.29356 -14.81782 -14.65053 -14.21904 -14.00589 -13.87954 -13.73116 -13.48315 -13.08434 -12.65388 -12.57007 -12.37326 -12.29893 -12.19879 -12.07008 -11.92458 -11.58126 -11.08696 -11.03144 -10.93637 -10.81854 -10.78269 -10.71688 -10.48756 -10.35580 -10.26706 -10.07996 -9.87015 -9.74832 -9.32721 -8.58150 -8.28284 -6.71394 -5.70155 -3.19155 2.87183 3.24490 3.39253 3.46542 3.49113 4.49493 4.50828 4.58409 4.78684 4.92109 5.08511 5.18248 5.23030 5.31477 5.34416 5.40289 5.47081 5.52453 5.57697 5.62195 5.65441 5.72040 5.74730 5.80126 5.83502 5.89577 5.98021 6.03755 6.09335 6.21012 6.25079 6.29630 6.31329 6.41839 6.54943 6.70596 6.84047 6.97345 7.03040 7.43290 7.71613 7.77570 7.84050 8.41371 8.47540 9.26432 9.87867 10.37016 11.34006 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026400 B = 0.004128 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.367370 B = 6781.125495 C = 7056.132594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.080 4.080 3 C -0.151 4.151 4 C -0.107 4.107 5 H 0.089 0.911 6 C -0.144 4.144 7 C 0.517 3.483 8 O -0.543 6.543 9 N -0.606 5.606 10 C 0.106 3.894 11 C -0.132 4.132 12 C -0.132 4.132 13 C 0.170 3.830 14 H 0.063 0.937 15 N -0.594 5.594 16 C 0.164 3.836 17 C -0.253 4.253 18 H 0.068 0.932 19 C 0.004 3.996 20 N -0.909 5.909 21 Si 0.905 3.095 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.290 1.290 25 C 0.097 3.903 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.056 0.944 41 H 0.066 0.934 42 H 0.031 0.969 43 H 0.043 0.957 44 H -0.004 1.004 45 H 0.251 0.749 46 H 0.088 0.912 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.404 6.000 -1.900 20.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.098 4.098 3 C -0.208 4.208 4 C -0.129 4.129 5 H 0.107 0.893 6 C -0.202 4.202 7 C 0.305 3.695 8 O -0.420 6.420 9 N -0.339 5.339 10 C -0.018 4.018 11 C -0.171 4.171 12 C -0.172 4.172 13 C 0.061 3.939 14 H 0.081 0.919 15 N -0.316 5.316 16 C 0.019 3.981 17 C -0.383 4.383 18 H 0.086 0.914 19 C -0.194 4.194 20 N -0.554 5.554 21 Si 0.735 3.265 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.217 1.217 25 C -0.027 4.027 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.049 0.951 43 H 0.062 0.938 44 H 0.014 0.986 45 H 0.062 0.938 46 H 0.106 0.894 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.861 6.033 -2.375 19.944 hybrid contribution 0.738 -0.695 -0.080 1.016 sum -18.123 5.338 -2.454 19.052 Atomic orbital electron populations 1.21914 0.95057 1.01826 1.01712 1.20942 0.95068 0.96356 0.97474 1.21886 1.02358 0.95421 1.01130 1.21419 0.92386 0.98661 1.00392 0.89258 1.21809 1.01461 0.94004 1.02920 1.20550 0.89688 0.75890 0.83362 1.90671 1.70262 1.49890 1.31187 1.48212 1.07915 1.72071 1.05677 1.21797 0.96351 0.98912 0.84699 1.21931 0.98057 0.97500 0.99567 1.22114 0.92597 1.02263 1.00183 1.20572 0.85337 0.95173 0.92840 0.91870 1.43874 0.98961 1.21091 1.67642 1.20801 0.94131 0.85793 0.97334 1.19280 1.00150 1.06613 1.12216 0.91444 1.25078 0.99219 0.98719 0.96430 1.70069 1.19601 1.43413 1.22365 0.86165 0.80310 0.81421 0.78570 1.20301 1.21626 1.21697 1.22388 0.77185 1.00135 1.03002 0.92779 0.92583 0.92290 0.90100 0.91684 0.92761 0.93229 0.91919 0.91986 0.91237 0.91642 0.90132 0.91364 0.91811 0.92510 0.91542 0.95111 0.93837 0.98560 0.93848 0.89403 0.92057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 8.85 37.15 0.33 -0.84 16 2 C -0.08 -0.85 2.14 -90.62 -0.19 -1.04 16 3 C -0.15 -1.67 8.91 37.16 0.33 -1.34 16 4 C -0.11 -1.19 1.48 -91.77 -0.14 -1.33 16 5 H 0.09 0.83 6.30 -51.93 -0.33 0.50 16 6 C -0.14 -1.42 8.84 37.16 0.33 -1.09 16 7 C 0.52 8.02 6.01 -10.99 -0.07 7.95 16 8 O -0.54 -10.52 14.43 5.56 0.08 -10.44 16 9 N -0.61 -9.31 2.97 -172.77 -0.51 -9.82 16 10 C 0.11 1.25 6.23 -3.71 -0.02 1.23 16 11 C -0.13 -1.70 6.08 -26.61 -0.16 -1.86 16 12 C -0.13 -2.30 5.15 -26.68 -0.14 -2.44 16 13 C 0.17 3.50 2.74 -67.80 -0.19 3.32 16 14 H 0.06 1.38 7.88 -51.93 -0.41 0.97 16 15 N -0.59 -14.92 2.82 -173.33 -0.49 -15.41 16 16 C 0.16 4.04 8.01 59.85 0.48 4.52 16 17 C -0.25 -7.05 9.59 -15.06 -0.14 -7.19 16 18 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 19 C 0.00 0.10 5.22 -17.43 -0.09 0.01 16 20 N -0.91 -26.51 10.49 55.49 0.58 -25.93 16 21 Si 0.91 22.17 29.56 -169.99 -5.02 17.15 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 C 0.10 1.82 5.77 -3.71 -0.02 1.80 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.43 6.33 -51.93 -0.33 0.10 16 29 H 0.08 1.01 7.87 -51.93 -0.41 0.60 16 30 H 0.06 0.90 6.45 -51.93 -0.34 0.57 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.60 7.82 -51.93 -0.41 0.19 16 35 H 0.07 0.53 6.21 -51.93 -0.32 0.21 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.74 5.13 -51.93 -0.27 0.47 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.06 1.00 7.71 -51.93 -0.40 0.60 16 41 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.03 0.81 7.33 -51.93 -0.38 0.43 16 43 H 0.04 1.17 7.28 -51.93 -0.38 0.79 16 44 H 0.00 -0.09 6.36 -51.93 -0.33 -0.42 16 45 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 46 H 0.09 1.89 7.03 -51.93 -0.37 1.53 16 47 H 0.06 1.16 6.50 -51.93 -0.34 0.82 16 LS Contribution 352.23 15.07 5.31 5.31 Total: -1.00 -31.19 352.23 -8.10 -39.28 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -8.35 Total: -1.82 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: 0.31 Total: 1.69 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: -0.42 Total: -51.16 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.08 Total: -10.44 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.19 -8.10 -39.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027604100.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.263 kcal (2) G-P(sol) polarization free energy of solvation -31.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds