Wall clock time and date at job start Tue Mar 31 2020 05:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46839 * 2 1 4 4 C 1.53002 * 109.47568 * 119.99716 * 2 1 3 5 5 H 1.09001 * 109.47086 * 300.00689 * 4 2 1 6 6 C 1.52997 * 109.47568 * 179.97438 * 4 2 1 7 7 C 1.50710 * 109.46617 * 60.00141 * 4 2 1 8 8 O 1.21278 * 119.99816 * 16.80303 * 7 4 2 9 9 N 1.34775 * 119.99923 * 196.79995 * 7 4 2 10 10 C 1.46926 * 120.62869 * 174.23877 * 9 7 4 11 11 C 1.53192 * 108.76925 * 233.60569 * 10 9 7 12 12 C 1.53043 * 109.31710 * 305.36552 * 11 10 9 13 13 C 1.53033 * 109.53708 * 61.36501 * 12 11 10 14 14 H 1.08999 * 109.50134 * 58.58956 * 13 12 11 15 15 N 1.46495 * 109.49771 * 178.68640 * 13 12 11 16 16 C 1.46502 * 120.00274 * 59.99963 * 15 13 12 17 17 C 1.36942 * 120.00124 * 240.00422 * 15 13 12 18 18 H 1.08000 * 120.00171 * 19.11956 * 17 15 13 19 19 C 1.38814 * 120.00030 * 199.12726 * 17 15 13 20 20 N 1.31622 * 120.00153 * 15.52702 * 19 17 15 21 21 Si 1.86797 * 119.99922 * 195.52471 * 19 17 15 22 22 H 1.48497 * 109.47102 * 59.99932 * 21 19 17 23 23 H 1.48499 * 109.47150 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47084 * 299.99754 * 21 19 17 25 25 C 1.46928 * 120.63121 * 354.23522 * 9 7 4 26 26 H 1.09001 * 109.46997 * 299.99613 * 1 2 3 27 27 H 1.08991 * 109.47166 * 60.00282 * 1 2 3 28 28 H 1.09000 * 109.46903 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47479 * 240.00165 * 2 1 3 30 30 H 1.08991 * 109.47011 * 299.99812 * 3 2 1 31 31 H 1.09001 * 109.47010 * 60.00395 * 3 2 1 32 32 H 1.09007 * 109.46931 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46896 * 63.90511 * 6 4 2 34 34 H 1.08995 * 109.47462 * 183.90201 * 6 4 2 35 35 H 1.09002 * 109.47089 * 303.90699 * 6 4 2 36 36 H 1.09004 * 109.58479 * 113.82551 * 10 9 7 37 37 H 1.08995 * 109.70310 * 353.46191 * 10 9 7 38 38 H 1.09000 * 109.49404 * 185.41391 * 11 10 9 39 39 H 1.08998 * 109.52574 * 65.33623 * 11 10 9 40 40 H 1.09006 * 109.45725 * 301.34387 * 12 11 10 41 41 H 1.08999 * 109.46247 * 181.39165 * 12 11 10 42 42 H 1.09007 * 109.46965 * 94.92805 * 16 15 13 43 43 H 1.08995 * 109.47280 * 214.92911 * 16 15 13 44 44 H 1.09000 * 109.47186 * 334.93045 * 16 15 13 45 45 H 0.96991 * 119.99968 * 179.97438 * 20 19 17 46 46 H 1.09002 * 109.58579 * 6.60352 * 25 9 7 47 47 H 1.08997 * 109.58709 * 246.18229 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.6767 -0.2074 2.1392 6 6 3.5701 -0.7217 1.2489 7 6 1.5377 -2.1421 1.2492 8 8 1.1095 -2.6338 0.2267 9 7 1.5645 -2.8663 2.3856 10 6 0.9643 -4.2065 2.4333 11 6 -0.0289 -4.2606 3.5984 12 6 0.6808 -3.8433 4.8885 13 6 1.1874 -2.4057 4.7520 14 1 0.3477 -1.7422 4.5450 15 7 1.8391 -1.9965 5.9986 16 6 3.0029 -2.7358 6.4938 17 6 1.3603 -0.9228 6.7010 18 1 0.3540 -0.5705 6.5294 19 6 2.1686 -0.2873 7.6336 20 7 3.4672 -0.5020 7.6340 21 14 1.4133 0.8725 8.8880 22 1 0.4255 0.1330 9.7141 23 1 2.4814 1.4186 9.7634 24 1 0.7327 1.9886 8.1834 25 6 2.1944 -2.3306 3.6001 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6766 1.9563 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 3.1300 1.4426 -0.0005 33 1 3.9337 0.3034 1.3186 34 1 3.9334 -1.2949 2.1019 35 1 3.9330 -1.1741 0.3260 36 1 1.7455 -4.9515 2.5843 37 1 0.4420 -4.4088 1.4983 38 1 -0.4098 -5.2763 3.7049 39 1 -0.8575 -3.5800 3.4026 40 1 1.5240 -4.5097 5.0709 41 1 -0.0173 -3.9047 5.7233 42 1 3.9157 -2.2435 6.1583 43 1 2.9819 -2.7590 7.5833 44 1 2.9769 -3.7549 6.1081 45 1 4.0320 -0.0576 8.2854 46 1 2.4834 -1.2927 3.4344 47 1 3.0759 -2.9226 3.8461 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027604101.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:36 Heat of formation + Delta-G solvation = -30.303078 kcal Electronic energy + Delta-G solvation = -24228.226246 eV Core-core repulsion = 21025.078091 eV Total energy + Delta-G solvation = -3203.148155 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.26315 -37.78424 -35.99928 -34.88660 -32.64423 -31.54824 -30.32725 -28.67966 -27.22598 -26.06984 -25.39398 -23.74229 -23.52008 -21.76880 -20.30194 -19.26204 -18.43965 -17.05049 -16.69911 -15.82518 -15.15785 -14.78833 -14.43325 -14.35620 -14.10275 -13.84690 -13.67797 -13.33030 -12.98860 -12.64464 -12.45344 -12.32821 -12.22196 -12.08720 -11.89292 -11.83206 -11.37702 -11.16246 -11.04690 -10.88483 -10.79766 -10.64438 -10.55918 -10.44689 -10.41127 -10.35646 -10.25829 -9.85060 -9.81467 -9.27923 -8.61934 -8.27583 -6.85476 -5.78467 -3.21314 2.90845 3.29076 3.35822 3.41779 3.43226 4.43152 4.68251 4.77434 4.98535 5.14087 5.24534 5.26526 5.33765 5.39634 5.47365 5.53617 5.55129 5.63249 5.68479 5.71174 5.73128 5.90451 5.92175 5.94900 5.97798 5.99518 6.07090 6.12520 6.15041 6.20000 6.31402 6.35483 6.38396 6.48266 6.49773 6.68969 6.80088 6.83256 6.93257 7.34484 7.64440 7.72449 7.76837 8.31861 8.47347 9.17306 9.80831 10.28044 11.26412 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015430 B = 0.005675 C = 0.004736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.202929 B = 4933.154304 C = 5910.861305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.074 4.074 3 C -0.149 4.149 4 C -0.108 4.108 5 H 0.098 0.902 6 C -0.146 4.146 7 C 0.523 3.477 8 O -0.555 6.555 9 N -0.607 5.607 10 C 0.113 3.887 11 C -0.130 4.130 12 C -0.133 4.133 13 C 0.168 3.832 14 H 0.065 0.935 15 N -0.592 5.592 16 C 0.161 3.839 17 C -0.257 4.257 18 H 0.069 0.931 19 C 0.003 3.997 20 N -0.906 5.906 21 Si 0.903 3.097 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.283 1.283 25 C 0.089 3.911 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.085 0.915 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.028 0.972 43 H 0.045 0.955 44 H 0.000 1.000 45 H 0.253 0.747 46 H 0.088 0.912 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.255 -2.560 -11.334 11.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.093 4.093 3 C -0.207 4.207 4 C -0.130 4.130 5 H 0.116 0.884 6 C -0.203 4.203 7 C 0.312 3.688 8 O -0.434 6.434 9 N -0.339 5.339 10 C -0.010 4.010 11 C -0.169 4.169 12 C -0.173 4.173 13 C 0.058 3.942 14 H 0.083 0.917 15 N -0.314 5.314 16 C 0.017 3.983 17 C -0.386 4.386 18 H 0.087 0.913 19 C -0.195 4.195 20 N -0.551 5.551 21 Si 0.733 3.267 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.210 1.210 25 C -0.035 4.035 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.103 0.897 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.047 0.953 43 H 0.063 0.937 44 H 0.018 0.982 45 H 0.063 0.937 46 H 0.106 0.894 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.323 -2.739 -11.709 12.247 hybrid contribution -0.218 0.654 0.966 1.187 sum -2.541 -2.085 -10.742 11.234 Atomic orbital electron populations 1.21916 0.95116 1.02795 1.01085 1.20895 0.96080 0.95355 0.97003 1.21914 1.01175 0.95766 1.01794 1.21403 0.97640 0.93048 1.00870 0.88428 1.21854 0.92896 1.03050 1.02498 1.20634 0.77671 0.87868 0.82664 1.90602 1.48215 1.72602 1.31993 1.48287 1.57124 1.17075 1.11449 1.21528 0.96193 0.83683 0.99567 1.21898 0.98250 1.01325 0.95388 1.22084 0.99982 0.98977 0.96234 1.20625 0.94076 0.93680 0.85790 0.91684 1.43953 1.33891 1.32991 1.20588 1.20801 0.89366 0.89871 0.98303 1.19191 0.96047 1.06710 1.16653 0.91330 1.24921 0.95011 0.98668 1.00908 1.70077 1.02452 1.45785 1.36801 0.86356 0.78100 0.80642 0.81577 1.21115 1.21635 1.20964 1.22755 0.97077 0.99779 0.83915 0.93091 0.93046 0.91454 0.90584 0.92753 0.92455 0.92357 0.91161 0.91633 0.92405 0.92077 0.89682 0.91406 0.91901 0.92292 0.91744 0.95341 0.93668 0.98183 0.93655 0.89366 0.91784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 8.89 37.16 0.33 -1.65 16 2 C -0.07 -0.95 2.12 -90.62 -0.19 -1.15 16 3 C -0.15 -1.62 8.84 37.16 0.33 -1.29 16 4 C -0.11 -1.52 1.46 -91.77 -0.13 -1.66 16 5 H 0.10 1.44 7.03 -51.93 -0.36 1.08 16 6 C -0.15 -1.87 8.35 37.16 0.31 -1.56 16 7 C 0.52 8.43 6.28 -10.98 -0.07 8.36 16 8 O -0.56 -10.09 13.93 5.56 0.08 -10.01 16 9 N -0.61 -9.57 2.97 -172.77 -0.51 -10.08 16 10 C 0.11 1.61 6.41 -3.71 -0.02 1.59 16 11 C -0.13 -1.78 6.08 -26.61 -0.16 -1.95 16 12 C -0.13 -2.19 5.13 -26.69 -0.14 -2.33 16 13 C 0.17 3.20 2.74 -67.82 -0.19 3.01 16 14 H 0.06 1.30 7.84 -51.93 -0.41 0.90 16 15 N -0.59 -13.82 2.82 -173.35 -0.49 -14.31 16 16 C 0.16 3.73 7.91 59.85 0.47 4.20 16 17 C -0.26 -6.70 9.63 -15.06 -0.14 -6.85 16 18 H 0.07 1.76 7.80 -52.49 -0.41 1.35 16 19 C 0.00 0.09 5.06 -17.43 -0.09 0.00 16 20 N -0.91 -25.27 10.63 55.49 0.59 -24.68 16 21 Si 0.90 21.21 29.58 -169.99 -5.03 16.18 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 25 C 0.09 1.53 4.74 -3.71 -0.02 1.51 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 1.01 6.15 -51.93 -0.32 0.69 16 29 H 0.08 1.03 7.92 -51.93 -0.41 0.62 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.59 6.52 -51.92 -0.34 0.25 16 33 H 0.07 0.81 6.65 -51.93 -0.35 0.46 16 34 H 0.06 0.90 6.38 -51.93 -0.33 0.57 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.08 1.24 7.05 -51.93 -0.37 0.87 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.06 0.97 6.72 -51.93 -0.35 0.62 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.03 0.71 7.44 -51.93 -0.39 0.32 16 43 H 0.04 1.15 7.13 -51.93 -0.37 0.78 16 44 H 0.00 -0.01 6.46 -51.93 -0.34 -0.34 16 45 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 46 H 0.09 1.56 4.82 -51.93 -0.25 1.31 16 47 H 0.06 1.13 7.51 -51.93 -0.39 0.74 16 LS Contribution 349.90 15.07 5.27 5.27 Total: -1.00 -28.46 349.90 -8.12 -36.58 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -8.31 Total: 0.79 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: 0.29 Total: 0.26 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: -0.41 Total: -49.08 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.08 Total: -10.01 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.46 -8.12 -36.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027604101.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.277 kcal (2) G-P(sol) polarization free energy of solvation -28.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds